mRNA_H-elongata_contig76304.15309.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76304.15309.1
Unique NamemRNA_H-elongata_contig76304.15309.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: A0A6H5KV09_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV09_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.170e-25
Identity = 48/62 (77.42%), Postives = 58/62 (93.55%), Query Frame = 1
Query:   13 VDEQWYTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
            VDE++YTSSRVRSI PV+FL GRIE++I +PAGLGLWAAFWMLP+++SRG WAA+GEIDIME
Sbjct:   86 VDERFYTSSRVRSIPPVAFLTGRIESRIQVPAGLGLWAAFWMLPSDTSRGGWAATGEIDIME 147          
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: A0A1M5YU54_9GAMM (Beta-glucanase, GH16 family n=2 Tax=Ferrimonas marina TaxID=299255 RepID=A0A1M5YU54_9GAMM)

HSP 1 Score: 84.7 bits (208), Expect = 4.230e-18
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
            YTS R+RS++   F  GRIEA+I LPAG GLW AFWMLP +   G WAASGEIDIME
Sbjct:  101 YTSGRIRSLNKADFRYGRIEARIKLPAGQGLWPAFWMLPTDEQYGGWAASGEIDIME 157          
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: A0A1Y0GY39_9BACT (GH16 domain-containing protein n=1 Tax=Armatimonadetes bacterium Uphvl-Ar1 TaxID=2004467 RepID=A0A1Y0GY39_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 6.570e-17
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIMEV 201
            +TS+R+R+++   F  GRIEA+I +PAG GLW AFWMLP+NS  G WA+SGEIDIME+
Sbjct:  260 FTSARLRTLNKYEFRYGRIEARIQVPAGQGLWPAFWMLPSNSPYGTWASSGEIDIMEM 317          
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: UPI0019B0D815 (family 16 glycosylhydrolase n=1 Tax=Saccharospirillum salsuginis TaxID=418750 RepID=UPI0019B0D815)

HSP 1 Score: 82.0 bits (201), Expect = 1.000e-16
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
            YTS R+RSI    F  GRIEA++ LPAG G+W AFWMLP + + G WAASGEIDIME
Sbjct:   94 YTSGRIRSIFKGDFTYGRIEARMKLPAGQGIWPAFWMLPTDEAYGGWAASGEIDIME 150          
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: UPI001C992DE8 (glycoside hydrolase family 16 protein n=1 Tax=Ferrimonas balearica TaxID=44012 RepID=UPI001C992DE8)

HSP 1 Score: 80.1 bits (196), Expect = 1.950e-16
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
            Y+S R+RS+    F  GRIEA+I LPAG GLW AFWMLP+    G WAASGEIDIME
Sbjct:   92 YSSGRIRSLHNGDFRYGRIEARIQLPAGQGLWPAFWMLPSEEVYGGWAASGEIDIME 148          
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: A0A0Q6LQI7_9BURK (Uncharacterized protein n=3 Tax=unclassified Rhizobacter TaxID=2640088 RepID=A0A0Q6LQI7_9BURK)

HSP 1 Score: 80.9 bits (198), Expect = 3.610e-16
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
            YTS+R+R+++   +L GR+EA+I LP G GLW AFWMLP++S  G WAASGEIDIME
Sbjct:  437 YTSARLRTLNKGDWLYGRMEARIKLPGGQGLWPAFWMLPSDSVYGGWAASGEIDIME 493          
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: UPI001E346656 (glycoside hydrolase family 16 protein n=1 Tax=Treponema zuelzerae TaxID=156 RepID=UPI001E346656)

HSP 1 Score: 79.3 bits (194), Expect = 5.430e-16
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIMEV 201
            +TS+R+RS   V  L G+IEA+I  P G GLW+AFWMLP +++ G WAASGEIDIME+
Sbjct:  123 FTSARIRSKDKVDVLYGKIEARIKFPGGNGLWSAFWMLPTDNAYGAWAASGEIDIMEM 180          
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: A0A357KVT8_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A357KVT8_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 6.430e-16
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
            YTS+R+R+      L GRIEA+I +P+G G+W AFWMLP  S  G WAASGEIDIME
Sbjct:   86 YTSARIRTAGKFEVLYGRIEARITIPSGTGIWPAFWMLPTASPYGSWAASGEIDIME 142          
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: A0A5M4D5X1_9CYAN (Glycosyl hydrolase family protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D5X1_9CYAN)

HSP 1 Score: 80.1 bits (196), Expect = 6.440e-16
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
            Y+S+R+R+     F  GR+EA+I +P G GLWAAFWMLP NS  G+WAASGEIDI+E
Sbjct:   92 YSSARLRTQGAFEFRYGRVEARIKVPKGQGLWAAFWMLPTNSPYGEWAASGEIDIIE 148          
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Match: A0YDK3_9GAMM (Beta-glucanase/Beta-glucan synthetase n=1 Tax=marine gamma proteobacterium HTCC2143 TaxID=247633 RepID=A0YDK3_9GAMM)

HSP 1 Score: 77.8 bits (190), Expect = 2.240e-15
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   28 YTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPANSSRGDWAASGEIDIME 198
            YTS+R+ +    +F  GRIEA+I LPAG GLW AFW+LP + + G WAASGEID+ME
Sbjct:  138 YTSARINTRDRFAFRYGRIEARIRLPAGQGLWPAFWLLPQDDAYGTWAASGEIDVME 194          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76304.15309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV09_9PHAE3.170e-2577.42GH16 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A1M5YU54_9GAMM4.230e-1866.67Beta-glucanase, GH16 family n=2 Tax=Ferrimonas mar... [more]
A0A1Y0GY39_9BACT6.570e-1762.07GH16 domain-containing protein n=1 Tax=Armatimonad... [more]
UPI0019B0D8151.000e-1664.91family 16 glycosylhydrolase n=1 Tax=Saccharospiril... [more]
UPI001C992DE81.950e-1664.91glycoside hydrolase family 16 protein n=1 Tax=Ferr... [more]
A0A0Q6LQI7_9BURK3.610e-1663.16Uncharacterized protein n=3 Tax=unclassified Rhizo... [more]
UPI001E3466565.430e-1660.34glycoside hydrolase family 16 protein n=1 Tax=Trep... [more]
A0A357KVT8_9BACT6.430e-1661.40Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A5M4D5X1_9CYAN6.440e-1661.40Glycosyl hydrolase family protein n=1 Tax=Cyanobac... [more]
A0YDK3_9GAMM2.240e-1559.65Beta-glucanase/Beta-glucan synthetase n=1 Tax=mari... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76304contigH-elongata_contig76304:1924..2139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog2880.D8LQ34
EggNOG free text desc.Glycosyl hydrolases family 16
EggNOG OGs2S1W9@2759,COG2273@1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.036453-CDS-H-elongata_contig76304:1923..21391622931168.036453-CDS-H-elongata_contig76304:1923..2139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76304 1924..2139 +
1691679726.1831183-CDS-H-elongata_contig76304:1923..21391691679726.1831183-CDS-H-elongata_contig76304:1923..2139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76304 1924..2139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76304.15309.1prot_H-elongata_contig76304.15309.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76304 1924..2139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76304.15309.1

>prot_H-elongata_contig76304.15309.1 ID=prot_H-elongata_contig76304.15309.1|Name=mRNA_H-elongata_contig76304.15309.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
EEVEVDEQWYTSSRVRSISPVSFLNGRIEAKIALPAGLGLWAAFWMLPAN
SSRGDWAASGEIDIMEVGSII*
back to top

mRNA from alignment at H-elongata_contig76304:1924..2139+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76304.15309.1 ID=mRNA_H-elongata_contig76304.15309.1|Name=mRNA_H-elongata_contig76304.15309.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig76304:1924..2139+ (Himanthalia elongata Himel1 dioecious)
GAAGAAGTCGAAGTGGATGAGCAATGGTACACTTCATCAAGAGTTCGGTC GATCTCACCGGTTTCTTTCCTCAACGGAAGGATAGAGGCAAAGATTGCTC TGCCGGCCGGTCTGGGACTGTGGGCAGCATTCTGGATGCTGCCGGCGAAT TCCTCGAGGGGTGATTGGGCAGCCTCTGGGGAAATAGACATTATGGAGGT GGGTAGCATCATATAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig76304:1924..2139+

>mRNA_H-elongata_contig76304.15309.1 ID=mRNA_H-elongata_contig76304.15309.1|Name=mRNA_H-elongata_contig76304.15309.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig76304:1924..2139+ (Himanthalia elongata Himel1 dioecious)
GAAGAAGTCGAAGTGGATGAGCAATGGTACACTTCATCAAGAGTTCGGTC
GATCTCACCGGTTTCTTTCCTCAACGGAAGGATAGAGGCAAAGATTGCTC
TGCCGGCCGGTCTGGGACTGTGGGCAGCATTCTGGATGCTGCCGGCGAAT
TCCTCGAGGGGTGATTGGGCAGCCTCTGGGGAAATAGACATTATGGAGGT
GGGTAGCATCATATAGGAAGAAGTCGAAGTGGATGAGCAATGGTACACTT
CATCAAGAGTTCGGTCGATCTCACCGGTTTCTTTCCTCAACGGAAGGATA
GAGGCAAAGATTGCTCTGCCGGCCGGTCTGGGACTGTGGGCAGCATTCTG
GATGCTGCCGGCGAATTCCTCGAGGGGTGATTGGGCAGCCTCTGGGGAAA
TAGACATTATGGAGGTGGGTAGCATCATATAG
back to top