mRNA_H-elongata_contig76273.15305.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76273.15305.1
Unique NamemRNA_H-elongata_contig76273.15305.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76273.15305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76273contigH-elongata_contig76273:937..1551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size616
Cds size588
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.484026-UTR-H-elongata_contig76273:936..9631622931167.484026-UTR-H-elongata_contig76273:936..963Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76273 937..963 +
1691679725.9822187-UTR-H-elongata_contig76273:936..9631691679725.9822187-UTR-H-elongata_contig76273:936..963Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76273 937..963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.5052018-CDS-H-elongata_contig76273:963..15511622931167.5052018-CDS-H-elongata_contig76273:963..1551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76273 964..1551 +
1691679725.9968498-CDS-H-elongata_contig76273:963..15511691679725.9968498-CDS-H-elongata_contig76273:963..1551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76273 964..1551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76273.15305.1prot_H-elongata_contig76273.15305.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76273 964..1551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76273.15305.1

>prot_H-elongata_contig76273.15305.1 ID=prot_H-elongata_contig76273.15305.1|Name=mRNA_H-elongata_contig76273.15305.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
MSHRQGDQPKSMHPHMPWRARSTEDKRSGLESANGGSGSSPTIAQQQQQL
RPPSRAHQKSISLATGGAVREGSGLRAITRPNIPWDRPSSLSATRATVTA
GSHFLGGSMAVSPELKMAGNSVNNDNILQSSSKGTLPPSSSSEGRCVNPT
ERPRRSRPKEQWSASADEQKIALTATPEPATAVAAPKARLRGPRSR
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mRNA from alignment at H-elongata_contig76273:937..1551+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76273.15305.1 ID=mRNA_H-elongata_contig76273.15305.1|Name=mRNA_H-elongata_contig76273.15305.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=615bp|location=Sequence derived from alignment at H-elongata_contig76273:937..1551+ (Himanthalia elongata Himel1 dioecious)
CCTGGGTGGCTGGTGAAGTAACTGGAAATGTCACACCGACAGGGAGACCA
GCCGAAATCGATGCATCCACACATGCCTTGGCGAGCAAGAAGCACCGAAG
ATAAACGAAGCGGTCTAGAAAGTGCGAATGGAGGCAGCGGCAGCAGTCCT
ACGATCGCGCAACAACAGCAGCAACTTCGGCCGCCAAGCCGGGCTCACCA
AAAATCGATTTCTCTGGCGACAGGAGGAGCAGTAAGAGAAGGAAGTGGGC
TCAGGGCCATAACGAGGCCCAATATACCATGGGATAGACCATCGTCCTTG
TCGGCAACGAGAGCAACGGTAACAGCAGGGTCACATTTCCTTGGCGGTAG
CATGGCGGTCTCCCCAGAACTCAAAATGGCAGGCAACAGCGTCAACAACG
ATAACATACTTCAAAGCTCGTCTAAGGGTACGTTGCCGCCGAGTTCGTCC
AGTGAGGGCCGATGCGTGAACCCCACTGAGAGACCACGGCGGTCTCGTCC
TAAAGAACAATGGTCGGCTAGTGCTGATGAACAGAAGATTGCACTGACAG
CCACACCGGAACCGGCAACAGCAGTAGCAGCACCGAAAGCCCGACTCCGA
GGTCCAAGGAGCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig76273:937..1551+

>mRNA_H-elongata_contig76273.15305.1 ID=mRNA_H-elongata_contig76273.15305.1|Name=mRNA_H-elongata_contig76273.15305.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig76273:937..1551+ (Himanthalia elongata Himel1 dioecious)
ATGTCACACCGACAGGGAGACCAGCCGAAATCGATGCATCCACACATGCC
TTGGCGAGCAAGAAGCACCGAAGATAAACGAAGCGGTCTAGAAAGTGCGA
ATGGAGGCAGCGGCAGCAGTCCTACGATCGCGCAACAACAGCAGCAACTT
CGGCCGCCAAGCCGGGCTCACCAAAAATCGATTTCTCTGGCGACAGGAGG
AGCAGTAAGAGAAGGAAGTGGGCTCAGGGCCATAACGAGGCCCAATATAC
CATGGGATAGACCATCGTCCTTGTCGGCAACGAGAGCAACGGTAACAGCA
GGGTCACATTTCCTTGGCGGTAGCATGGCGGTCTCCCCAGAACTCAAAAT
GGCAGGCAACAGCGTCAACAACGATAACATACTTCAAAGCTCGTCTAAGG
GTACGTTGCCGCCGAGTTCGTCCAGTGAGGGCCGATGCGTGAACCCCACT
GAGAGACCACGGCGGTCTCGTCCTAAAGAACAATGGTCGGCTAGTGCTGA
TGAACAGAAGATTGCACTGACAGCCACACCGGAACCGGCAACAGCAGTAG
CAGCACCGAAAGCCCGACTCCGAGGTCCAAGGAGCCGCATGTCACACCGA
CAGGGAGACCAGCCGAAATCGATGCATCCACACATGCCTTGGCGAGCAAG
AAGCACCGAAGATAAACGAAGCGGTCTAGAAAGTGCGAATGGAGGCAGCG
GCAGCAGTCCTACGATCGCGCAACAACAGCAGCAACTTCGGCCGCCAAGC
CGGGCTCACCAAAAATCGATTTCTCTGGCGACAGGAGGAGCAGTAAGAGA
AGGAAGTGGGCTCAGGGCCATAACGAGGCCCAATATACCATGGGATAGAC
CATCGTCCTTGTCGGCAACGAGAGCAACGGTAACAGCAGGGTCACATTTC
CTTGGCGGTAGCATGGCGGTCTCCCCAGAACTCAAAATGGCAGGCAACAG
CGTCAACAACGATAACATACTTCAAAGCTCGTCTAAGGGTACGTTGCCGC
CGAGTTCGTCCAGTGAGGGCCGATGCGTGAACCCCACTGAGAGACCACGG
CGGTCTCGTCCTAAAGAACAATGGTCGGCTAGTGCTGATGAACAGAAGAT
TGCACTGACAGCCACACCGGAACCGGCAACAGCAGTAGCAGCACCGAAAG
CCCGACTCCGAGGTCCAAGGAGCCGC
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