mRNA_H-elongata_contig76256.15304.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76256.15304.1
Unique NamemRNA_H-elongata_contig76256.15304.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76256.15304.1 vs. uniprot
Match: A0A6H5KIH1_9PHAE (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIH1_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.600e-22
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1
Query:   40 RVIEAAVSQAFLAADEEFLTTSGKPSAGSTATTAIILGDRFYSFNVGDSRTVLCRSGRAELAS 228
            RVIE  V+ AFLA DEEFLTT+ KPS+GSTATTA++LGDRFY FNVGDSRT+LCR+GRAE+ S
Sbjct:  945 RVIEDVVTAAFLATDEEFLTTASKPSSGSTATTAMVLGDRFYGFNVGDSRTILCRAGRAEVVS 1007          
BLAST of mRNA_H-elongata_contig76256.15304.1 vs. uniprot
Match: D7FNP4_ECTSI (Putative serine/threonine phosphatase 2C ptc2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP4_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.100e-14
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   55 AVSQAFLAADEEFLTTSGKPSAGSTATTAIILGDRFYSFNVGDSRTVLCRSGRAELAS 228
            A+S+AF AAD+EF+ TS  P AGSTATT ++LG R Y  NVGDSRTVLCR G+  +AS
Sbjct:  147 AISEAFAAADKEFIATSRLPEAGSTATTCLVLGPRLYMANVGDSRTVLCRGGKVRMAS 204          
BLAST of mRNA_H-elongata_contig76256.15304.1 vs. uniprot
Match: A0A7S4DEC0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEC0_HETAK)

HSP 1 Score: 75.5 bits (184), Expect = 1.910e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   34 LRRVIEAAVSQAFLAADEEFLTTSGKPSAGSTATTAIILGDRFYSFNVGDSRTVLCRSGRAELAS 228
            L  ++ A V++ F   DE +L TS  P  GSTATT +I+G+RFY+FNVGDSRT+LCR+G+  L S
Sbjct:  197 LDELVAAGVARCFRRTDEHYLNTSDNPQCGSTATTVLIIGNRFYNFNVGDSRTLLCRNGKVRLVS 261          
BLAST of mRNA_H-elongata_contig76256.15304.1 vs. uniprot
Match: A0A7S2FV88_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV88_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.910e-12
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   43 VIEAAVSQAFLAADEEFLTTSGKPSAGSTATTAIILGDRFYSFNVGDSRTVLCRSGRA 216
            ++  A++++F+  D+EF+ T+G   AGSTATT ++LGDR Y  NVGDSRTVLCRSG A
Sbjct:  302 IVIGALTESFIYTDKEFMRTAGHAQAGSTATTVLLLGDRAYCGNVGDSRTVLCRSGEA 359          
BLAST of mRNA_H-elongata_contig76256.15304.1 vs. uniprot
Match: A0A484DYX8_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DYX8_BRELC)

HSP 1 Score: 65.9 bits (159), Expect = 8.230e-11
Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 LSPLFPHVTCNLRRVIEAAVSQAFLAADEEFLTTSGKPSAGSTATTAIILGDRFYSFNVGDSRTVLCRSGRAE 219
            L PL       L+ +I   ++ AF   DEEFL TS +P AGSTATT  + G   +  NVGDSRTVL R+G AE
Sbjct:  500 LKPLLTMTIEELQSIIMKRLTNAFERTDEEFLRTSDRPQAGSTATTVFVAGKYLFVANVGDSRTVLSRNGTAE 572          
BLAST of mRNA_H-elongata_contig76256.15304.1 vs. uniprot
Match: W2QPZ8_PHYPN (Uncharacterized protein n=30 Tax=Phytophthora TaxID=4783 RepID=W2QPZ8_PHYPN)

HSP 1 Score: 65.5 bits (158), Expect = 1.120e-10
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 LSPLFPHVTCNLRRVIEAAVSQAFLAADEEFLTTSGKPSAGSTATTAIILGDRFYSFNVGDSRTVLCRSGRAE 219
            L PL       L+ +I   +++AF   DEEFL  S +P AGSTATT  + G   +  NVGDSRTVL R+G+AE
Sbjct:  442 LKPLLNKSAEELQSMITKRLTEAFERTDEEFLNESERPQAGSTATTVFVAGKHMFVSNVGDSRTVLSRNGKAE 514          
BLAST of mRNA_H-elongata_contig76256.15304.1 vs. uniprot
Match: M4BCH9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BCH9_HYAAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.870e-10
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 LSPLFPHVTCNLRRVIEAAVSQAFLAADEEFLTTSGKPSAGSTATTAIILGDRFYSFNVGDSRTVLCRSGRAE 219
            L PL       L+ +I   ++ AF   DEEFL  S +P AGSTATT ++ G+  +  NVGDSRTVL R+G+AE
Sbjct:  478 LRPLVDKSPEELQSMITKRLTDAFEQTDEEFLNGSERPQAGSTATTVLVAGNYIFVSNVGDSRTVLSRAGKAE 550          
BLAST of mRNA_H-elongata_contig76256.15304.1 vs. uniprot
Match: A0A2D4CJ68_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CJ68_PYTIN)

HSP 1 Score: 63.9 bits (154), Expect = 3.900e-10
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   31 NLRRVIEAAVSQAFLAADEEFLTTSGKPSAGSTATTAIILGDRFYSFNVGDSRTVLCRSGRA 216
            +L R++E ++  AF   DEEFLT+S +P AGSTATT    G++ +  NVGDSRTVL R G A
Sbjct:  374 DLFRIVEESLVMAFERTDEEFLTSSERPQAGSTATTVFFAGNQMFVANVGDSRTVLSRRGLA 435          
BLAST of mRNA_H-elongata_contig76256.15304.1 vs. uniprot
Match: A0A7S2GBR9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GBR9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.280e-10
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   43 VIEAAVSQAFLAADEEFLTTSGKPSAGSTATTAIILGDRFYSFNVGDSRTVLCRSGRA 216
            ++ A + ++FL  D +FL TS +  AGSTATT ++LG+R Y  NVGDSRTVLCR+G A
Sbjct:  311 IVRAGLKESFLGIDRKFLETSEQ--AGSTATTVLVLGNRAYCANVGDSRTVLCRNGEA 366          
BLAST of mRNA_H-elongata_contig76256.15304.1 vs. uniprot
Match: A0A836CBM8_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBM8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.280e-10
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   43 VIEAAVSQAFLAADEEFLTTSGKPSAGSTATTAIILGDRFYSFNVGDSRTVLCRSGRAELAS 228
            +++ A  +AF A D+ F+  S  P AGSTATTA+ILG R Y  NVGDSRT++ R GR   AS
Sbjct:  377 LVKQAFMEAFKATDDAFIKDSEHPQAGSTATTALILGGRVYVANVGDSRTIITREGRVLAAS 438          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76256.15304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIH1_9PHAE2.600e-2276.19PPM-type phosphatase domain-containing protein n=2... [more]
D7FNP4_ECTSI1.100e-1463.79Putative serine/threonine phosphatase 2C ptc2 n=1 ... [more]
A0A7S4DEC0_HETAK1.910e-1453.85Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2FV88_9STRA1.910e-1256.90Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A484DYX8_BRELC8.230e-1149.32Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
W2QPZ8_PHYPN1.120e-1047.95Uncharacterized protein n=30 Tax=Phytophthora TaxI... [more]
M4BCH9_HYAAE2.870e-1047.95Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A2D4CJ68_PYTIN3.900e-1053.23Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A7S2GBR9_9STRA5.280e-1055.17Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CBM8_9STRA7.280e-1053.23Phosphatase 2C-like domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76256contigH-elongata_contig76256:528..755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue2.1e-19
Seed eggNOG ortholog2880.D7G1B3
KEGG koko:K01090
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.4253495-CDS-H-elongata_contig76256:527..7551622931167.4253495-CDS-H-elongata_contig76256:527..755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76256 528..755 -
1691679725.969356-CDS-H-elongata_contig76256:527..7551691679725.969356-CDS-H-elongata_contig76256:527..755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76256 528..755 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76256.15304.1prot_H-elongata_contig76256.15304.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76256 528..755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76256.15304.1

>prot_H-elongata_contig76256.15304.1 ID=prot_H-elongata_contig76256.15304.1|Name=mRNA_H-elongata_contig76256.15304.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
LSPLFPHVTCNLRRVIEAAVSQAFLAADEEFLTTSGKPSAGSTATTAIIL
GDRFYSFNVGDSRTVLCRSGRAELAS
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mRNA from alignment at H-elongata_contig76256:528..755-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76256.15304.1 ID=mRNA_H-elongata_contig76256.15304.1|Name=mRNA_H-elongata_contig76256.15304.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig76256:528..755- (Himanthalia elongata Himel1 dioecious)
CTTTCCCCCCTTTTCCCACATGTAACTTGCAACTTGCGAAGGGTGATCGA GGCAGCGGTAAGCCAGGCCTTCCTCGCGGCGGACGAGGAGTTCCTCACGA CCTCCGGCAAGCCGTCCGCCGGCAGCACGGCCACCACCGCGATCATCCTT GGAGACCGTTTCTACAGTTTCAACGTCGGGGACAGCAGGACCGTTCTATG CCGGTCGGGTCGCGCGGAGTTGGCGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig76256:528..755-

>mRNA_H-elongata_contig76256.15304.1 ID=mRNA_H-elongata_contig76256.15304.1|Name=mRNA_H-elongata_contig76256.15304.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig76256:528..755- (Himanthalia elongata Himel1 dioecious)
CTTTCCCCCCTTTTCCCACATGTAACTTGCAACTTGCGAAGGGTGATCGA
GGCAGCGGTAAGCCAGGCCTTCCTCGCGGCGGACGAGGAGTTCCTCACGA
CCTCCGGCAAGCCGTCCGCCGGCAGCACGGCCACCACCGCGATCATCCTT
GGAGACCGTTTCTACAGTTTCAACGTCGGGGACAGCAGGACCGTTCTATG
CCGGTCGGGTCGCGCGGAGTTGGCGTCGCTTTCCCCCCTTTTCCCACATG
TAACTTGCAACTTGCGAAGGGTGATCGAGGCAGCGGTAAGCCAGGCCTTC
CTCGCGGCGGACGAGGAGTTCCTCACGACCTCCGGCAAGCCGTCCGCCGG
CAGCACGGCCACCACCGCGATCATCCTTGGAGACCGTTTCTACAGTTTCA
ACGTCGGGGACAGCAGGACCGTTCTATGCCGGTCGGGTCGCGCGGAGTTG
GCGTCG
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