mRNA_H-elongata_contig76246.15303.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76246.15303.1
Unique NamemRNA_H-elongata_contig76246.15303.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76246.15303.1 vs. uniprot
Match: D8LU30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU30_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.250e-6
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 PVALAAAGGSAQLVSELIRAEVPYRTRDDAGRTPLHHAARYGNISVLRVLV 153
            P+ALAAA GSAQ+VSEL+RA++PYRTRD              ++ VLRVLV
Sbjct:  580 PIALAAASGSAQVVSELVRADIPYRTRDRDXXXXXXXXXXXXHVPVLRVLV 630
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76246.15303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU30_ECTSI1.250e-654.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76246contigH-elongata_contig76246:103..258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.377957-CDS-H-elongata_contig76246:102..2581622931167.377957-CDS-H-elongata_contig76246:102..258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76246 103..258 +
1691679725.959031-CDS-H-elongata_contig76246:102..2581691679725.959031-CDS-H-elongata_contig76246:102..258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76246 103..258 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76246.15303.1prot_H-elongata_contig76246.15303.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76246 103..258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76246.15303.1

>prot_H-elongata_contig76246.15303.1 ID=prot_H-elongata_contig76246.15303.1|Name=mRNA_H-elongata_contig76246.15303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
PVALAAAGGSAQLVSELIRAEVPYRTRDDAGRTPLHHAARYGNISVLRVL
VA
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mRNA from alignment at H-elongata_contig76246:103..258+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76246.15303.1 ID=mRNA_H-elongata_contig76246.15303.1|Name=mRNA_H-elongata_contig76246.15303.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig76246:103..258+ (Himanthalia elongata Himel1 dioecious)
CCAGTTGCACTGGCAGCTGCGGGCGGTTCCGCGCAGCTGGTGTCCGAGCT
GATCCGCGCTGAAGTCCCCTACCGCACCAGAGATGACGCGGGTCGGACCC
CCTTGCACCATGCGGCTCGCTACGGTAACATCTCCGTCTTGCGGGTGCTG
GTGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig76246:103..258+

>mRNA_H-elongata_contig76246.15303.1 ID=mRNA_H-elongata_contig76246.15303.1|Name=mRNA_H-elongata_contig76246.15303.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig76246:103..258+ (Himanthalia elongata Himel1 dioecious)
CCAGTTGCACTGGCAGCTGCGGGCGGTTCCGCGCAGCTGGTGTCCGAGCT
GATCCGCGCTGAAGTCCCCTACCGCACCAGAGATGACGCGGGTCGGACCC
CCTTGCACCATGCGGCTCGCTACGGTAACATCTCCGTCTTGCGGGTGCTG
GTGGCGCCAGTTGCACTGGCAGCTGCGGGCGGTTCCGCGCAGCTGGTGTC
CGAGCTGATCCGCGCTGAAGTCCCCTACCGCACCAGAGATGACGCGGGTC
GGACCCCCTTGCACCATGCGGCTCGCTACGGTAACATCTCCGTCTTGCGG
GTGCTGGTGGCG
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