mRNA_H-elongata_contig11983.1530.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11983.1530.1
Unique NamemRNA_H-elongata_contig11983.1530.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11983.1530.1 vs. uniprot
Match: A0A6H5KM67_9PHAE (Histidine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM67_9PHAE)

HSP 1 Score: 506 bits (1302), Expect = 2.610e-172
Identity = 290/389 (74.55%), Postives = 310/389 (79.69%), Query Frame = 1 
Query:   10 MTEFNGSDAGPLGKGKGCVRPRDENQTTLTVTYLSEALRVLTSGVRDRLAVLHGMTEIGSINNGTRKSGSESGVESVLRELQLALAEELLLSMRVLRAEEDKAAAEVPQRVSGGGQN--QSPATTASSGSADTAGMTAAQIAKIEXXXXXXXXXXXXXXXXXKDKKKAAGLGVGSAELRQKVSPAGEPLA-GLEEISIRIDPFRTGDQAMGPFLVAQAERLSAGGAQRKPKIAKGARDFLPEQMRVREQAFAAIRKVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHGMGNIKRYHIAKVYRRDQPNVQLGRFREFYQCDFDIAGSYGLMVPDAEVLSVACEILSSLPIGTFQIKLNHRR 1167
            MTEFNGSDAGPLG G GCV+PRD  QT LTVT+LSEA+RVLTSG R+R   L G     S   G    G  +GVE VLRELQ ALAEE+ LS+ VLR E                    Q P + A  G  DTAGM+AAQI KIE     XXXXXXXXXXXX    KAAGLGVG AEL+Q+V+PAG   A G +EI+ +IDPFRTG+QAMGPFL A AERLS GGAQRKPKIAKGARDFLPEQMRVREQAF AIR VFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHG+GNIKR+HIAKVYRRDQPNVQLGRFREFYQCDFDIAG+YGLMVPDAEVLSVACEILS+LPIG FQIKLNHRR
Sbjct:    1 MTEFNGSDAGPLGVGDGCVQPRDGKQTELTVTFLSEAVRVLTSGCRERSQALQGSANGASSGGG---GGDVTGVEGVLRELQFALAEEMALSVAVLRQEXXXXXXXXXXXXXXXXXXXIQPPQSGAPGGGVDTAGMSAAQIDKIEAKRAAXXXXXXXXXXXXXXXXKAAGLGVGCAELKQRVAPAGAAAAVGADEIAAKIDPFRTGEQAMGPFLCAMAERLSNGGAQRKPKIAKGARDFLPEQMRVREQAFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHGVGNIKRFHIAKVYRRDQPNVQLGRFREFYQCDFDIAGNYGLMVPDAEVLSVACEILSALPIGNFQIKLNHRR 386
[Close]
BLAST of mRNA_H-elongata_contig11983.1530.1 vs. uniprot
Match: D7G588_ECTSI (Histidyl-tRNA Synthetase Similar to Histidine Ammonia-Lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G588_ECTSI)

HSP 1 Score: 499 bits (1285), Expect = 4.460e-167
Identity = 291/392 (74.23%), Postives = 310/392 (79.08%), Query Frame = 1 
Query:    1 RCIMTEFNGSDAGPLGKGKGCVRPRDENQTTLTVTYLSEALRVLTSGVRDRLAVLHGMTEIGSINNGTRKSGSESGVESVLRELQLALAEELLLSMRVLRAEEDKAAAEVPQRVSGGGQNQSPA--TTASSGSADTAGMTAAQIAKIEXXXXXXXXXXXXXXXXXKDKKKAAGLGVGSAELRQKVSPAGEPLA-GLEEISIRIDPFRTGDQAMGPFLVAQAERLSAGGAQRKPKIAKGARDFLPEQMRVREQAFAAIRKVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHGMGNIKRYHIAKVYRRDQPNVQLGRFREFYQCDFDIAGSYGLMVPDAEVLSVACEILSSLPIGTFQIKLNHRR 1167
            R IMTEFNGSDAGPLG G GCV+PRD  QT LT T+L+EA+RVLTSG R+R   L G     S   G    G   GVE VLRELQ ALAEE+ LS+ VLR                          + A  G  DTAGM+AAQIAKIE   XXXXXXXXXXXXXX    KAAGLGVG AEL+Q+V+PAG   A G +EI+ +IDPFRTG+QAMGPFL A AERLS GGAQRKPKIAKGARDFLPEQMRVREQAF AIR VFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHG+GNIKR+HIAKVYRRDQPNVQLGRFREFYQCDFDIAG+YGLMVPDAEVLSVACEILSSLPIG FQIKLNHRR
Sbjct:  274 RSIMTEFNGSDAGPLGVGDGCVQPRDGKQTELTATFLTEAVRVLTSGCRERSQALQGSANGASSCGG---GGDVFGVEGVLRELQSALAEEMALSVAVLRQXXXXXXXXXXXXXXXXXXXXXXXXXSGAPGGGVDTAGMSAAQIAKIEAKRXXXXXXXXXXXXXXXXXXKAAGLGVGCAELKQRVAPAGAAAAVGADEIAAKIDPFRTGEQAMGPFLCAMAERLSNGGAQRKPKIAKGARDFLPEQMRVREQAFTAIRNVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHGVGNIKRFHIAKVYRRDQPNVQLGRFREFYQCDFDIAGNYGLMVPDAEVLSVACEILSSLPIGNFQIKLNHRR 662
[Close]
BLAST of mRNA_H-elongata_contig11983.1530.1 vs. uniprot
Match: A0A835Z9D3_9STRA (AA_TRNA_LIGASE_II domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D3_9STRA)

HSP 1 Score: 316 bits (809), Expect = 1.040e-96
Identity = 161/222 (72.52%), Postives = 183/222 (82.43%), Query Frame = 1 
Query:  514 LGVGSAELRQKVSPA----GEPLAGLEEISIRIDPFRTGDQAMGPFLVAQAERLSAGGAQRKPKIAKGARDFLPEQMRVREQAFAAIRKVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHGMGNIKRYHIAKVYRRDQPNVQLGRFREFYQCDFDIAGSYGLMVPDAEVLSVACEILSSLPIGTFQIKLNHRR 1167
            LG G+AE++++V  A    GEP A  E +   +D    G+  +G  +    E+L +GGA+RKPK+ KG RD LPEQMRVREQAF AIR+VFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLAL+ +GNIKR+HIAKVYRRDQPN+  GR+REFYQCDFDIAG+YG MV DAEVLS ACEILS LPIG FQ+KLNHRR
Sbjct:  448 LGDGTAEIKRRVMAAAGGEGEPSA--EAVLSAVDFNCAGEGTLGGVIAGLIEKLGSGGARRKPKLPKGTRDQLPEQMRVREQAFEAIRRVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALNSVGNIKRFHIAKVYRRDQPNLARGRYREFYQCDFDIAGAYGPMVADAEVLSAACEILSGLPIGDFQVKLNHRR 667
[Close]
BLAST of mRNA_H-elongata_contig11983.1530.1 vs. uniprot
Match: A0A7S4D7J6_HETAK (Histidine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7J6_HETAK)

HSP 1 Score: 303 bits (775), Expect = 6.410e-94
Identity = 148/180 (82.22%), Postives = 160/180 (88.89%), Query Frame = 1 
Query:  628 MGPFLVAQAERLSAGGAQRKPKIAKGARDFLPEQMRVREQAFAAIRKVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHGMGNIKRYHIAKVYRRDQPNVQLGRFREFYQCDFDIAGSYGLMVPDAEVLSVACEILSSLPIGTFQIKLNHRR 1167
            +G    A AE+LS GGA+RKPKIAKG RDFLPEQMRVRE+AF  IR VFK HGAVEI+TPVFEL ETL GKYGEDSKLIYDLADQGGELL+LRYDLTVPFARYLALH +GNIKRYHIA+VYRRDQPN+Q GRFREFYQCDFDIAGSY  MVPDAEVLSVA EILS LPIG F+IK+NHR+
Sbjct:  146 LGAAAAALAEKLSGGGARRKPKIAKGTRDFLPEQMRVRERAFNIIRNVFKLHGAVEIETPVFELTETLKGKYGEDSKLIYDLADQGGELLSLRYDLTVPFARYLALHSVGNIKRYHIARVYRRDQPNIQQGRFREFYQCDFDIAGSYAPMVPDAEVLSVAAEILSQLPIGDFEIKINHRK 325
[Close]
BLAST of mRNA_H-elongata_contig11983.1530.1 vs. uniprot
Match: A0A7S1UVS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UVS9_9STRA)

HSP 1 Score: 285 bits (730), Expect = 7.490e-90
Identity = 138/191 (72.25%), Postives = 160/191 (83.77%), Query Frame = 1 
Query:  607 FRTGDQAMGPFLVAQAE----RLSAGGAQRKPKIAKGARDFLPEQMRVREQAFAAIRKVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHGMGNIKRYHIAKVYRRDQPNVQLGRFREFYQCDFDIAGSYGLMVPDAEVLSVACEILSSLPIGTFQIKLNHRR 1167
             +  D A+ P +  Q +    +LS+GG QRKPKI KG RD+LP+QMR+R+QAF  IR+VF+ HGAVEIDTPVFELK+TLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFAR+LAL+ +GNIKRYHI KVYRRDQP +  GR+REFYQCDFDIAG YG M+PD+E LSV C+IL +LPIG F IKLNHRR
Sbjct:  194 LQANDFALSPNVQTQLDQILDKLSSGGVQRKPKIPKGTRDYLPDQMRIRQQAFDIIRRVFQSHGAVEIDTPVFELKDTLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARFLALNSVGNIKRYHIGKVYRRDQPVLSRGRYREFYQCDFDIAGVYGRMIPDSECLSVVCDILGNLPIGDFGIKLNHRR 384
[Close]
BLAST of mRNA_H-elongata_contig11983.1530.1 vs. uniprot
Match: A0A7S2LH49_9STRA (Histidine--tRNA ligase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LH49_9STRA)

HSP 1 Score: 292 bits (748), Expect = 4.090e-87
Identity = 141/184 (76.63%), Postives = 159/184 (86.41%), Query Frame = 1 
Query:  616 GDQAMGPFLVAQAERLSAGGAQRKPKIAKGARDFLPEQMRVREQAFAAIRKVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHGMGNIKRYHIAKVYRRDQPNVQLGRFREFYQCDFDIAGSYGLMVPDAEVLSVACEILSSLPIGTFQIKLNHRR 1167
            GD+A+   L    E L +GG QRKPK+AKG RD+LPEQM +R++AF  IR+VFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFAR+LA++ +GNIKR+HI KVYRRDQP +  GR+REFYQCDFDIAG YG MVPD+E L+VACEIL SLPIG F IKLNHRR
Sbjct:  453 GDEALVSELEQAIEALLSGGMQRKPKVAKGTRDYLPEQMAIRDKAFTIIRRVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARFLAVNAVGNIKRFHIGKVYRRDQPQLSKGRYREFYQCDFDIAGVYGRMVPDSECLAVACEILDSLPIGDFGIKLNHRR 636
[Close]
BLAST of mRNA_H-elongata_contig11983.1530.1 vs. uniprot
Match: A0A7S2RAZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RAZ5_9STRA)

HSP 1 Score: 278 bits (711), Expect = 1.000e-86
Identity = 133/186 (71.51%), Postives = 158/186 (84.95%), Query Frame = 1 
Query:  619 DQAMGPFLVAQAERLSA----GGAQRKPKIAKGARDFLPEQMRVREQAFAAIRKVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHGMGNIKRYHIAKVYRRDQPNVQLGRFREFYQCDFDIAGSYGLMVPDAEVLSVACEILSSLPIGTFQIKLNHR 1164
            D  + P  + + E +++    GG QRKPKIAKG RD+LP+QM +R++AF  IR+VF+ HGAVEIDTPVFELK+TLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFAR+LAL+ +GNIKR+HI KVYRRDQP +  GR+REFYQCDFDIAG+YG MVPDAE ++VA EIL++LPIG F IKLNHR
Sbjct:  219 DTFLAPSTIVEMETITSALLSGGVQRKPKIAKGTRDYLPDQMMIRDKAFTIIRRVFRSHGAVEIDTPVFELKDTLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARFLALNNVGNIKRFHIGKVYRRDQPALSRGRYREFYQCDFDIAGNYGRMVPDAECVAVAAEILAALPIGEFGIKLNHR 404
[Close]
BLAST of mRNA_H-elongata_contig11983.1530.1 vs. uniprot
Match: A0A7S2K2S8_9STRA (Histidine--tRNA ligase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2S8_9STRA)

HSP 1 Score: 290 bits (742), Expect = 2.650e-86
Identity = 138/171 (80.70%), Postives = 155/171 (90.64%), Query Frame = 1 
Query:  655 ERLSAGGAQRKPKIAKGARDFLPEQMRVREQAFAAIRKVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHGMGNIKRYHIAKVYRRDQPNVQLGRFREFYQCDFDIAGSYGLMVPDAEVLSVACEILSSLPIGTFQIKLNHRR 1167
            E+L +GG QRKPKIAKG RD+LPEQM +R+QAF  IR+VFKRHGAVEIDTPVFELK+TLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFAR++AL+ +GNIKR+HI KVYRRDQP +  GR+REFYQCDFDIAG+YG MVPD+E + VACEILSSLPIG F IKLNHRR
Sbjct:  455 EKLLSGGVQRKPKIAKGTRDYLPEQMMIRDQAFQIIRRVFKRHGAVEIDTPVFELKDTLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARFIALNSVGNIKRFHIGKVYRRDQPVLSKGRYREFYQCDFDIAGTYGRMVPDSEAVCVACEILSSLPIGDFGIKLNHRR 625
[Close]
BLAST of mRNA_H-elongata_contig11983.1530.1 vs. uniprot
Match: B8CDX2_THAPS (Histidine--tRNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDX2_THAPS)

HSP 1 Score: 278 bits (712), Expect = 2.670e-86
Identity = 132/163 (80.98%), Postives = 148/163 (90.80%), Query Frame = 1 
Query:  679 QRKPKIAKGARDFLPEQMRVREQAFAAIRKVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHGMGNIKRYHIAKVYRRDQPNVQLGRFREFYQCDFDIAGSYGLMVPDAEVLSVACEILSSLPIGTFQIKLNHRR 1167
            QR+PK+AKG RD+LPEQM +R++AF  IR+VFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFAR+LA++ +GNIKR+HI KVYRRDQP +  GR+REFYQCDFDIAG YG MVPD+E L+VACEIL SLPIG F IKLNHRR
Sbjct:    2 QRRPKVAKGTRDYLPEQMSIRDKAFTIIRRVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARFLAVNAVGNIKRFHIGKVYRRDQPALSRGRYREFYQCDFDIAGVYGRMVPDSECLAVACEILDSLPIGDFGIKLNHRR 164
[Close]
BLAST of mRNA_H-elongata_contig11983.1530.1 vs. uniprot
Match: A0A7S1SGC3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SGC3_9CHLO)

HSP 1 Score: 274 bits (701), Expect = 3.910e-86
Identity = 135/183 (73.77%), Postives = 148/183 (80.87%), Query Frame = 1 
Query:  616 GDQAMGPFLVAQAERLSAGGAQRKPKIAKGARDFLPEQMRVREQAFAAIRKVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARYLALHGMGNIKRYHIAKVYRRDQPNVQLGRFREFYQCDFDIAGSYGLMVPDAEVLSVACEILSSLPIGTFQIKLNHR 1164
            G   + P L      + A  A RKPKIAKG RDF+P+QM +REQAFA I  VFKRHGAV IDTPVFEL+ETL GKYGEDSKLIYDLADQGGE L+LRYDLTVPFARY ALHGMGNIKRYHIA+VYRRDQP +  GRFREF+QCDFDIAG+Y  MVPDAEVL V  EILS L +G F+IKLNHR
Sbjct:   27 GTAKLPPLLDMLKRVIEANQATRKPKIAKGTRDFMPDQMTIREQAFAKIVSVFKRHGAVAIDTPVFELRETLMGKYGEDSKLIYDLADQGGENLSLRYDLTVPFARYTALHGMGNIKRYHIARVYRRDQPQMNRGRFREFFQCDFDIAGAYAAMVPDAEVLKVLVEILSDLALGDFEIKLNHR 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11983.1530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KM67_9PHAE2.610e-17274.55Histidine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP... [more]
D7G588_ECTSI4.460e-16774.23Histidyl-tRNA Synthetase Similar to Histidine Ammo... [more]
A0A835Z9D3_9STRA1.040e-9672.52AA_TRNA_LIGASE_II domain-containing protein (Fragm... [more]
A0A7S4D7J6_HETAK6.410e-9482.22Histidine--tRNA ligase n=1 Tax=Heterosigma akashiw... [more]
A0A7S1UVS9_9STRA7.490e-9072.25Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S2LH49_9STRA4.090e-8776.63Histidine--tRNA ligase n=1 Tax=Skeletonema marinoi... [more]
A0A7S2RAZ5_9STRA1.000e-8671.51Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2K2S8_9STRA2.650e-8680.70Histidine--tRNA ligase n=1 Tax=Leptocylindrus dani... [more]
B8CDX2_THAPS2.670e-8680.98Histidine--tRNA ligase n=1 Tax=Thalassiosira pseud... [more]
A0A7S1SGC3_9CHLO3.910e-8673.77Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11983contigH-elongata_contig11983:591..8379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score499.6
Seed ortholog evalue1.3e-138
Seed eggNOG ortholog2880.D7G588
Preferred nameHARS
KEGG rclassRC00055,RC00523
KEGG koko:K01892,ko:K06675
KEGG ReactionR03655
KEGG Pathwayko00970,ko04111,map00970,map04111
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0000122,GO:0000166,GO:0002119,GO:0002164,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004821,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006418,GO:0006427,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048468,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Histidyl-trna synthetase
EggNOG OGsCOG0124@1,COG2986@1,KOG0222@2759,KOG1936@2759
EC6.1.1.21
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistidyl-tRNA Synthetase Similar to Histidine Ammonia-Lyase
Ec32 orthologEc-14_006630.1
Exons8
Model size1182
Cds size1173
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929701.9510927-CDS-H-elongata_contig11983:590..7031622929701.9510927-CDS-H-elongata_contig11983:590..703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 591..703 -
1691679124.6249416-CDS-H-elongata_contig11983:590..7031691679124.6249416-CDS-H-elongata_contig11983:590..703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 591..703 -
1622929701.9753854-CDS-H-elongata_contig11983:1370..14551622929701.9753854-CDS-H-elongata_contig11983:1370..1455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 1371..1455 -
1691679124.6369662-CDS-H-elongata_contig11983:1370..14551691679124.6369662-CDS-H-elongata_contig11983:1370..1455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 1371..1455 -
1622929701.999521-CDS-H-elongata_contig11983:5524..56831622929701.999521-CDS-H-elongata_contig11983:5524..5683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 5525..5683 -
1691679124.6455076-CDS-H-elongata_contig11983:5524..56831691679124.6455076-CDS-H-elongata_contig11983:5524..5683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 5525..5683 -
1622929702.0148036-CDS-H-elongata_contig11983:6082..61781622929702.0148036-CDS-H-elongata_contig11983:6082..6178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 6083..6178 -
1691679124.6537254-CDS-H-elongata_contig11983:6082..61781691679124.6537254-CDS-H-elongata_contig11983:6082..6178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 6083..6178 -
1622929702.029067-CDS-H-elongata_contig11983:6477..65851622929702.029067-CDS-H-elongata_contig11983:6477..6585Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 6478..6585 -
1691679124.6614463-CDS-H-elongata_contig11983:6477..65851691679124.6614463-CDS-H-elongata_contig11983:6477..6585Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 6478..6585 -
1622929702.0429156-CDS-H-elongata_contig11983:6792..70771622929702.0429156-CDS-H-elongata_contig11983:6792..7077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 6793..7077 -
1691679124.6696403-CDS-H-elongata_contig11983:6792..70771691679124.6696403-CDS-H-elongata_contig11983:6792..7077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 6793..7077 -
1622929702.0577273-CDS-H-elongata_contig11983:7483..77321622929702.0577273-CDS-H-elongata_contig11983:7483..7732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 7484..7732 -
1691679124.6795413-CDS-H-elongata_contig11983:7483..77321691679124.6795413-CDS-H-elongata_contig11983:7483..7732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 7484..7732 -
1622929702.0739255-CDS-H-elongata_contig11983:8292..83701622929702.0739255-CDS-H-elongata_contig11983:8292..8370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 8293..8370 -
1691679124.6933062-CDS-H-elongata_contig11983:8292..83701691679124.6933062-CDS-H-elongata_contig11983:8292..8370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11983 8293..8370 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929702.088354-UTR-H-elongata_contig11983:8370..83791622929702.088354-UTR-H-elongata_contig11983:8370..8379Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11983 8371..8379 -
1691679124.7045026-UTR-H-elongata_contig11983:8370..83791691679124.7045026-UTR-H-elongata_contig11983:8370..8379Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11983 8371..8379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11983.1530.1prot_H-elongata_contig11983.1530.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11983 591..8370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11983.1530.1

>prot_H-elongata_contig11983.1530.1 ID=prot_H-elongata_contig11983.1530.1|Name=mRNA_H-elongata_contig11983.1530.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=391bp
MTEFNGSDAGPLGKGKGCVRPRDENQTTLTVTYLSEALRVLTSGVRDRLA
VLHGMTEIGSINNGTRKSGSESGVESVLRELQLALAEELLLSMRVLRAEE
DKAAAEVPQRVSGGGQNQSPATTASSGSADTAGMTAAQIAKIEAKRAAKA
AKAAAKGPAKKDKKKAAGLGVGSAELRQKVSPAGEPLAGLEEISIRIDPF
RTGDQAMGPFLVAQAERLSAGGAQRKPKIAKGARDFLPEQMRVREQAFAA
IRKVFKRHGAVEIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLALRY
DLTVPFARYLALHGMGNIKRYHIAKVYRRDQPNVQLGRFREFYQCDFDIA
GSYGLMVPDAEVLSVACEILSSLPIGTFQIKLNHRRQASV*
back to top

mRNA from alignment at H-elongata_contig11983:591..8379-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11983.1530.1 ID=mRNA_H-elongata_contig11983.1530.1|Name=mRNA_H-elongata_contig11983.1530.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7789bp|location=Sequence derived from alignment at H-elongata_contig11983:591..8379- (Himanthalia elongata Himel1 dioecious)
AGGTGCATCATGACGGAGTTTAACGGTTCGGACGCAGGGCCTCTGGGGAA
GGGAAAGGGCTGCGTCCGCCCTCGAGATGAAAATCAGGTCCGAGCGTTGT
ACATGAATCTTTCTTTATTGACTGTTGACACCATGCCCCCGAGGCACCTC
AGACCGCCGCGTGGATGAGTATTTTCATCTTAGATGTTGGCGTTATACAC
TGTACGCTAGGATGCGACGATTGACGTACCGCGGTTCTTGTTTACAGCGG
CGTGGGGGCACTGGCGTGGACCTTTCTTGCTCGCTCATCGCTCATTAATC
GCTAGACCAATGCCTTGTATTGATATTTATATTCAGCATGTAGACTAATT
ATCGAACACTATGACACAATTTCCAGAAATGTTCGCCGTGCCCGACCCAG
CCCATTTCTCGGTCTTAACCCAAACGCTGCGTGGGGGCTATGACGGGGAC
ACTGGCGGGGACCTTTCTTGCTCGCTCATTAATCGTTAGACGAATGGCTT
GTATTGATATTTATATTCAACATGTAGACTAATTATCGAAAACTGTGACA
CAATTTCAAAAAATGTTCGCCGTGCCCGACCCAGCCCATTTCTCGGTCTT
AACCCAAATCAGCGTCGACCCGTGGCCCGTCCCATACGCCGCGGCAGACA
ACGCTTACCGTTACCTATTTGTCAGAGGCCTTGAGAGTGCTGACCAGCGG
GGTCAGAGATCGTTTAGCGGTGTTGCATGGAATGACAGAAATCGGGAGCA
TCAACAACGGAACCCGCAAGTCTGGATCTGAATCTGGTGTGGAGAGCGTG
CTGAGGGAGCTGCAGTTGGCACTGGCGGAGGAGCTGTTATTATCGATGAG
GGTGCTGCGGGCGGAGGAGGACAAGGCTGCGGCCGAGGTGCCTCAGGTAT
TTCCCGAGCTATGGATGTTTGTTTGCGTTGCTCACGGTTGCCGCTGAGAA
GACACGGTGAGAGCCTTGTTCCGTCTGAGGCGGCGCTATTCGATTTCCAC
TCAATGCCAATGTCATGAAGCTGTGACTGCGTAAATGTCATGCTGCTGAC
ATGCGTTGGCTGTGGGCGTCGACACGAAGTTGTTCGCGTTATCCTCGCTA
CCAGAAGCAGCTGTTTCAAGAGGCGATTGCCGCAGACCTTGTGGCGGTTG
AACGTCCCTACCATTATAAAATCCTTAATTTTATGTTGTTCCTGTGTCAC
AAAACACGGGCGCCGTAACCGCGCGAGTCTTCCTGACTGTGGATAACCCC
CTTCCGTCCTTTCTGGGTGTCCACGTTTTCAATTTTGCTTTCGATGGCGT
AGCGAGTCAGCGGAGGTGGACAAAATCAGTCACCGGCAACGACCGCATCG
TCGGGGTCGGCAGACACAGCCGGCATGACCGCAGCGCAGATCGCGAAGAT
AGAGGCGAAAAGGGCGGCCAAGGCAGCCAAGGCGGCGGCGAAAGGCCCCG
CAAAGAAGGATAAAAAAAAAGCCGCAGGACTAGGCGTGGGCTCTGCGGAG
TTGCGCCAAAAGGTGTCGCCTGCCGGCGAGCCATTGGCGGGTCTGGAAGA
GATCTCGATAAGGATTGATCCCTTTCGCACCGGCGATGTAAGTGCAGCGC
GACTAGCGTCCTCGTTTTTGCTTTCGTGATGACGGCGTGCTAAAAAAACT
TGTAGACGCTAGAAACGGCAGCATGAGCGACGGACGGTAATGTACGGCCC
CACCGAACATTTTCGTGCAGTTCGACAGCTCCGAGACTCGGCACGACCGT
ATGTGGTCGCTCGTTTGCGGCCTCAATCGTGCTTCGTTGTGCAGCAGGCA
ATGGGGCCTTTTTTGGTTGCCCAGGCGGAGAGACTCAGCGCCGGTGGTGC
CCAGCGCAAGCCCAAGATCGCCAAGGGGGCAAGAGACTTCCTTCCTGAGC
AGGTTTGGCCTATCGGGCGCTTCGTGACTGACATTACTGACAAGGCCGAC
TATATCTACTTCCGCATTTTAGATTTATGATTTCCGGGGACGCGTTGATC
AGAGTCCTCTGACTCTGAATGCGACCGGAAACCATCGGTAGGTTCTGAAA
AGAAGGCGTTTTCAAAGGCGTGAACGTGTCACCTTTCCCCCCTTTCCTGG
CAGCTGAGTTCTCGGTGGGGTGAACCTGTCTTATGTGACAGTTTTTCCGT
GCACGCGCTCTGGATGCTTGACGGCGGCGGTGACATGGTACCCCTTCGCA
GATGCGCGTCCGTGAGCAGGCCTTCGCGGCGATCCGTAAAGTCTTCAAGC
GCCACGGTGCGGTGGAGATTGATACTCCCGTCTTCGAGTTAAAAGAGGTA
AACATGTTTGCAATGTATTTCTGATTGTAATGGACCTATCGTATTGTGAT
CTCGCCGGCGGAGTCTCTCCCGCCTAGGTCGATGGCGACGGAGTGCGGGG
CTAAGCTGAATCTACCATATCTTCTCTCGCTTATAATTAAATACATTCGG
CGTACTTCTGGCAATGTTTTGATCTGTTGTTCATGCTCGTAAAAACATTT
TATGGACGTTTTAGGAGATGGAGGTGCAGAAAGGGGTTGTTAAATCTATC
ATATTGGCCACATGATTGTTGATGTTGAATTATCTCGGAAGCGTAGGGCA
ACAATGACCTGAGACCTCTTCGTGACATGGGGACGTTTATGCATAGCATA
CGCTCAGGACGCGTGCGATTTTTTCGTTGGTTGCTTCTATGTCCAGACTT
TGACGGGAAAGTACGGCGAGGACTCCAAGCTCATTTATGACCTGGCGGAC
CAGGGGGGCGAGCTGCTGGCACTGCGCTACGACCTCACCGTGCCCTTTGC
GAGGTACCTGGCGCTGCACGGGATGGGTAACATCAAGCGCTACCACATCG
CCAAGGTGCGCGAGGCGGAGGCCACACGGCACGAACGAAGCACACGCTAT
TATTTTTGAAATGTTGTGAAGATCCGACATGTGGAAGAGGGGTGTCCTTC
CTTTTCGTAATTGACCTCTTGATTGTTTCAGATAATATTATATTTTAATG
CTGGTTGTCACGTATTTTTTTACCGTTGTTCTACCGTTGTTCTAATGTTT
GAATTTATTTATTCAGAATGAAGGCATTACGCCCGAAACAGGCACCCGGG
AGTGCACCGTTGCGCTTGCCGGGTCCTCGTGGACTAGACATGATATCCCT
GCGACCGCGTTTTGTAGATATAAGACTCTGCTTGACACAGGCGTAGGCGT
AGGGTATTGACCATATATTTGACTAGCGTGGCGAGCAATCGGCGCGAGTA
AAAACATCAGAGTGGCGAGGAATGCCTGCGCAGATGCCCGACTTCGATAA
GCCGGTAGCCCACGAACCGAGCACCTCGTCGCACGTGGTCTTAATGAGCT
CCTTGTGTTGGCCATTTCGATCAGAGCACCTCGTGAAGAACGATTTATTT
ATCTCACCTTCTCGGCGCACAATGGTCAGTATAGGTAGTGTAGGCAGTAT
AGGTACACTAGGACACGGAAATTGATCCAGCATCCAGTATATATAAGCAG
TGCAGGCAGATCACCAGTTTCGTCGCCTTTTTTTGTCCCCGTATATTTTG
GACAGGCTCCGTTACGTCTGGATACTGTCCAACAGTACAGTAGTACATTA
TAGTTGTATCCCTCTAAACATTTGGGCACCTAAGAACCCGCAAACTTGAA
GCGACATCGCCTGGTGCTTTTCCAGTAGACGGCCACTACGGCTACGGTGG
ATATATTACTGCTTGTACATTTTTCGGATCGCCTCTGCAGCGCTCTCCGG
GGCGCGATAACCCGATCTCTCTACGAAAGCCCCTTGGGGTTGGGGAGCCC
CGAAGTGCAGGACGCACCTGCAAGCGCATTTGTGCTGAATGGGAAAAGCC
TCCGGAACCCACCCACAACAAACCCTTGCTACAGACAACACAAAATCACA
CAAAACTGCTCTAAACACACAACACACAACGCGGTGATGTCGTCCCTGTG
GTAAATTTGCGGGGGTGAAAGTGGCATCTGCATTATCCACTCAAACTTAC
TCTCTTACTTACAAGTGGTAGCTCTTAAGGTTTTGATAGACCCAACCCTA
ACCCTAACCGTAACCCACACCTAAATCAAAATATACAGCTGGTACAGCTG
CTGGTGTGGCTATCAAGGAAAGTTTATAGCTGCTACAGAGGCTGGGCTGA
GTTTGCTCTTGGAGTCGAAATCAAATGCAGCTGTAAACTTTGATTTGGGT
CAGGGTTAGGGTCGGGTTGGGTCCACCAAATACGTATAAGTTACTACTTA
CAAGTAAGAGTCACTTTTGAGTTTTGGAGGCTTTTTTCGTCCTGTACAAA
TGCGCTTGCAGGTGCGTCCTTCATTTTGGGGCTCCCCTTGGGATTGTGGT
TGGGGTTGTGTGTGTGTAGTCATCACATATACCGGCAGAAAAGTGTGGAT
CAACCGGATTTGGTTGCCTCCTGCTTGTGGTAAACTGAACAGAGAAAATG
AACCTGCTAGGAAAAGACGGCATTGCCCAGACACGCCTACCAATCCGGCA
TGGGAGATACGGTTTAACCAGTAGCGCCGACATCCGCGACACCGCCTTCA
TCGGCAGCCAGGCGCTTGTCCTAGCGCGAGCAATGGCGAAGGTTGCGGGG
CCTGACGTGCCTGCCTTTCTGGACCGTATGCCGAACATTCCTGTGCCAAG
CAGCACGAGATCGCCGGCGCCTTTGGAACATCGTGGACAGCTCTCGCACT
GGGACACGACCCGCGTAACCGGAGGCAAGGAGTGCTCCTCACGGAGGCCA
GGGCTAGAGGCTGGTCCCTGGAGACAGCCGTGGGGGCGCGGGTAGTGACC
CACACGCGCACAAGGTGGGGGGGAACCGAAGAGTCCAAAGGGGAAGGGGA
TGAGAGAGGTGGAAACGGCTCATACCCTGGCACAGTGCAAAATGCCCAGT
CTGCGCTTACTTGCGTCCAAACGAAGGTGGTGGGTGAGCGCCTCATGGAG
TGGGTGCACAAGATGGCTAAACGCCGCCGCGCTGCCGACGGTGATACCGC
CCGGGCCGAAGTTTTCCCCTACCAGCAGACCCTGGTTTGACTGATGGGGG
TCCGCGAGAAGGGGAACCAAGCTGAGGTTGGCAGCATGAACCTGGAACCA
GAGGGCACCATGGAGTCCGCCATGTTCAGACAGAGCCTTGCTCGGTGCCT
GGGCTCGTACTGCAACGACGAAGCGCTAGGCGGGAAGTGCCACGGTACCG
GTTACAAAGAAAGCCTGACGGGGGTCTGATGAACCACACCCATGGCGTCA
TACTCCACCAAGCGGTGAGCAAGGTCCTGCGCGACTGCAGTGTCCCGCAC
CACATCGAGGATATCGCGCAAGACTGATGCGTATCAAGGATTGTTTGATC
CTCCTACCTACACCCTTCAGATTCTTGTGTTCTACATCTGTGGTGTCGGC
GAAGACGCGGTCAAATTCTACCAGACCGTCGCGACGCACGGGGTGCTCAC
GCGAGGGTATCTGGAGGGCGATCAATTAGCAGCGGCACGGGACCAAGAGA
CGACAAAACTTCGGCGACACTCGTCTTTCGTCCTGAACCGGGCGCTTTCC
GCGAGGACCCTCGACGCTATGGCCCGAGCTGTCGGCCGACTAGCCACGGA
TCCAGCGGATAGCCTAGCTCTAGCGACAAGCAAAGGCACAAGGTCTCGCG
CCATCGCAGCGGTAGTGGCGGAGGCATCCGCAGTAGCTGCGGCGGTGGTG
AAGGAGGACGAGGAGGAGAGATTCGAGGAGGACATCTTCGCGGCGACTGC
CGCGGCGACGGGGCGGCAGATGAGAGAGCTGAAGAAAGCCTCGCGCTACC
GGTACCGACCGAAAGCGAGGAACCGATCGCACCGGCAGTAGCAGCACGAC
CAGTGGAGGTGACGATGGGGCATACAGGGGCTGGTGCAGGCGCGGTTACA
GTGACGGAGCTGGCGGCCGCTGTCGCGACAATGCAGGTTGTAGGAATTGA
GGGGGGGGTGATACGCCTGTCACCAACGCTGTAGCACTGAGAGAGGGGTC
GGGAGGATCGCGGTGCGAGCACCCGCCGCCACAGTTGGGAATGCGGCGAC
GCTTGTAACGGCAGTAGCGATGATGTCCGTCCCACAAGCGACGAGAATCC
GCGAGATCGGAAAAGGGTGTAGGCCTCAACCGAGCTGGAGACAGATGGGG
GCGGGGCCGTAGCGGCATTCGAAACGCAACGCCCTGGGGTGTTGCGCCCA
GAGGTGGGGCAGCGGGGGTAGGAGGGAGAGTTGTAGCGGTAGTTCGGCGC
GGTTGCGTAAGCAACGGAGTAGGATAGGCCAATCCAACGTCTCCAGGGAT
AACTTCCCATAAGGGAGATTATTTGAAAACTTGATTGGCGCCCCTTTACG
TGTAATGCCGGTTTGCGCGGTCTAATGCAAATTGATAAAAAGGGAAAATA
AGTTTCCCCTGTCCCCGTTAGCGCCTGATGATTTGGTATCGCGAGACGGG
TTCGGTCGTCTCGTCCCGTATCACCCTGTTTATTCTCTCAACCCTGACGG
AATCTGGCGCGTACTCCCGGGATCCTCTCGATCCTACCATTTTCCGTGAC
GGCGTCTATCTCTACCGTCAACCGCCATCGTGTCAATCCCGATTTCATCA
CGTCACGCAATTGCGTATCGATGGCGTTTACCACCAAGAGTCCACCGGCA
CTGAGCCAATAGTCCTCAAGATAGCTTGAGTACGGGTGCAGCCTATTGAG
GTAGTAACATAACCCCATGGACCAATTATTATGCGTCTCTATTGGCACAG
TGGACATGTGCGATGCAGTCACATACAATATCGTAGGCGTTGACAATTTG
ACTGATCAATGATTTTTATTTCTGTGAAGTGTAAAGTTGTGAAGCACGAA
CGCTTTTACGTACGATGACGGAAACCGTCCGATGATGCCCCGAACGAATC
GTTTTTCTATTAAAAATCTTACAGGTTTACCGTCGCGATCAGCCAAACGT
CCAGCTTGGACGATTCCGCGAGTTCTACCAGTGCGACTTTGACATCGCCG
GAAGCTATGGTGAGAGAGACACGGACACACACGAGACCAGAGGCGTGTTG
GGTTGCGAGGGTATCGGTAGTGGTAACGGCAGCATGCGGGCGGCCTAAGC
GCATGAAGTAGATATCGCCAAACGTTTAAAGTGTGAGGTTTGCCCTTGGC
CTGTCTCAGCAACAGTAGGACTCAGTGTCTGTGTAGGATGATGTTTAGGG
TGATGTACCGTGGCGAGATATTGATTCAAGTGTTTTAATATACATTGTTT
TTTGCTATAGTCTATGGGATGGAACACACAATATCTGCTATCGTCTAGCG
GTGTAGTCGGTGTATAGTTGACATGGGAGATGGGAGATGGGAGATGTAAA
CCGCGAAATAGCGCATTGTATGTCATAATCAAAAGATTTGTAGCCCTCCG
GTGGCTCTCCCTGCCAGACCACTCGAACCAGACGAAGGGGTGCGAGGCAC
GATTTGGTGGTATTTTTGCCGCGATATGTCATATACCGGTATTAGATACA
CTACATATTACATACTATATATTACACACTATATAGTGGTCATATCGTGA
CGATTCAGAACCCTATTAATAGTTAATAGTTAAATAGTTCCAAGTCCTCG
TGCAGTAGCCTCCACCGTAAACTTTATTCTAGGCAACATCCGGAGATCCA
CGACTGGAGGGTCTGTGATTCCGCAGGTCTCATGGTACCGGACGCGGAAG
TGCTGAGCGTGGCGTGCGAGATCCTGAGCTCCCTCCCCATTGGAACGTTC
CAGATTAAGCTCAACCACCGCAGGCAAGCGAGCGTTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11983:591..8379-

>mRNA_H-elongata_contig11983.1530.1 ID=mRNA_H-elongata_contig11983.1530.1|Name=mRNA_H-elongata_contig11983.1530.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2346bp|location=Sequence derived from alignment at H-elongata_contig11983:591..8379- (Himanthalia elongata Himel1 dioecious)
ATGACGGAGTTTAACGGTTCGGACGCAGGGCCTCTGGGGAAGGGAAAGGG
CTGCGTCCGCCCTCGAGATGAAAATCAGATGACGGAGTTTAACGGTTCGG
ACGCAGGGCCTCTGGGGAAGGGAAAGGGCTGCGTCCGCCCTCGAGATGAA
AATCAGACAACGCTTACCGTTACCTATTTGTCAGAGGCCTTGAGAGTGCT
GACCAGCGGGGTCAGAGATCGTTTAGCGGTGTTGCATGGAATGACAGAAA
TCGGGAGCATCAACAACGGAACCCGCAAGTCTGGATCTGAATCTGGTGTG
GAGAGCGTGCTGAGGGAGCTGCAGTTGGCACTGGCGGAGGAGCTGTTATT
ATCGATGAGGGTGCTGCGGGCGGAGGAGGACAAGGCTGCGGCCGAGGTGC
CTCAGACAACGCTTACCGTTACCTATTTGTCAGAGGCCTTGAGAGTGCTG
ACCAGCGGGGTCAGAGATCGTTTAGCGGTGTTGCATGGAATGACAGAAAT
CGGGAGCATCAACAACGGAACCCGCAAGTCTGGATCTGAATCTGGTGTGG
AGAGCGTGCTGAGGGAGCTGCAGTTGGCACTGGCGGAGGAGCTGTTATTA
TCGATGAGGGTGCTGCGGGCGGAGGAGGACAAGGCTGCGGCCGAGGTGCC
TCAGCGAGTCAGCGGAGGTGGACAAAATCAGTCACCGGCAACGACCGCAT
CGTCGGGGTCGGCAGACACAGCCGGCATGACCGCAGCGCAGATCGCGAAG
ATAGAGGCGAAAAGGGCGGCCAAGGCAGCCAAGGCGGCGGCGAAAGGCCC
CGCAAAGAAGGATAAAAAAAAAGCCGCAGGACTAGGCGTGGGCTCTGCGG
AGTTGCGCCAAAAGGTGTCGCCTGCCGGCGAGCCATTGGCGGGTCTGGAA
GAGATCTCGATAAGGATTGATCCCTTTCGCACCGGCGATCGAGTCAGCGG
AGGTGGACAAAATCAGTCACCGGCAACGACCGCATCGTCGGGGTCGGCAG
ACACAGCCGGCATGACCGCAGCGCAGATCGCGAAGATAGAGGCGAAAAGG
GCGGCCAAGGCAGCCAAGGCGGCGGCGAAAGGCCCCGCAAAGAAGGATAA
AAAAAAAGCCGCAGGACTAGGCGTGGGCTCTGCGGAGTTGCGCCAAAAGG
TGTCGCCTGCCGGCGAGCCATTGGCGGGTCTGGAAGAGATCTCGATAAGG
ATTGATCCCTTTCGCACCGGCGATCAGGCAATGGGGCCTTTTTTGGTTGC
CCAGGCGGAGAGACTCAGCGCCGGTGGTGCCCAGCGCAAGCCCAAGATCG
CCAAGGGGGCAAGAGACTTCCTTCCTGAGCAGCAGGCAATGGGGCCTTTT
TTGGTTGCCCAGGCGGAGAGACTCAGCGCCGGTGGTGCCCAGCGCAAGCC
CAAGATCGCCAAGGGGGCAAGAGACTTCCTTCCTGAGCAGATGCGCGTCC
GTGAGCAGGCCTTCGCGGCGATCCGTAAAGTCTTCAAGCGCCACGGTGCG
GTGGAGATTGATACTCCCGTCTTCGAGTTAAAAGAGATGCGCGTCCGTGA
GCAGGCCTTCGCGGCGATCCGTAAAGTCTTCAAGCGCCACGGTGCGGTGG
AGATTGATACTCCCGTCTTCGAGTTAAAAGAGACTTTGACGGGAAAGTAC
GGCGAGGACTCCAAGCTCATTTATGACCTGGCGGACCAGGGGGGCGAGCT
GCTGGCACTGCGCTACGACCTCACCGTGCCCTTTGCGAGGTACCTGGCGC
TGCACGGGATGGGTAACATCAAGCGCTACCACATCGCCAAGACTTTGACG
GGAAAGTACGGCGAGGACTCCAAGCTCATTTATGACCTGGCGGACCAGGG
GGGCGAGCTGCTGGCACTGCGCTACGACCTCACCGTGCCCTTTGCGAGGT
ACCTGGCGCTGCACGGGATGGGTAACATCAAGCGCTACCACATCGCCAAG
GTTTACCGTCGCGATCAGCCAAACGTCCAGCTTGGACGATTCCGCGAGTT
CTACCAGTGCGACTTTGACATCGCCGGAAGCTATGGTTTACCGTCGCGAT
CAGCCAAACGTCCAGCTTGGACGATTCCGCGAGTTCTACCAGTGCGACTT
TGACATCGCCGGAAGCTATGGTCTCATGGTACCGGACGCGGAAGTGCTGA
GCGTGGCGTGCGAGATCCTGAGCTCCCTCCCCATTGGAACGTTCCAGATT
AAGCTCAACCACCGCAGGCAAGCGAGCGTTTGAGTCTCATGGTACCGGAC
GCGGAAGTGCTGAGCGTGGCGTGCGAGATCCTGAGCTCCCTCCCCATTGG
AACGTTCCAGATTAAGCTCAACCACCGCAGGCAAGCGAGCGTTTGA
back to top