mRNA_H-elongata_contig76218.15300.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76218.15300.1
Unique NamemRNA_H-elongata_contig76218.15300.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76218.15300.1 vs. uniprot
Match: D7G1P2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P2_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 1.760e-88
Identity = 155/185 (83.78%), Postives = 173/185 (93.51%), Query Frame = 1
Query:    1 GEKQAAAANANVAKKMAMERVSHSTKIDVFENAFRKIKEATGVSDVNEVIQKIISQDSTAESLMNLTKENQAKIESLNKRKAALRAAVEDVKYSGPGEGHRRKMVDDHEELVSNSLARLERVRHKHERQTKILISVKAGVEHLQDKLKSTADEVGVETMTMTDETLVDVLEVAEKVLVKVTDRIK 555
            G K+AAAANAN   KM M+RVSH +KIDVFENAFRKIKEATGVSDVNEVIQK+ISQ+STAESLM LTKENQA+IE LNKRK++L+AAVE+VKYSGPGEGHRRKMVDDHEEL+SNS+ARLERVRHKHER +KILISVKAGVEHLQDKLKSTA EVGVE M MTDET+VDVLEVAEKVLV+V++R+K
Sbjct:  271 GLKKAAAANANTTAKMVMDRVSHKSKIDVFENAFRKIKEATGVSDVNEVIQKMISQESTAESLMILTKENQARIEGLNKRKSSLKAAVEEVKYSGPGEGHRRKMVDDHEELLSNSVARLERVRHKHERLSKILISVKAGVEHLQDKLKSTATEVGVEPMVMTDETVVDVLEVAEKVLVEVSERVK 455          
BLAST of mRNA_H-elongata_contig76218.15300.1 vs. uniprot
Match: A0A7S2SGG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGG0_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.460e-55
Identity = 109/183 (59.56%), Postives = 141/183 (77.05%), Query Frame = 1
Query:    7 KQAAAANANVAKKMAMERVSHSTKIDVFENAFRKIKEATGVSDVNEVIQKIISQDSTAESLMNLTKENQAKIESLNKRKAALRAAVEDVKYSGPGEGHRRKMVDDHEELVSNSLARLERVRHKHERQTKILISVKAGVEHLQDKLKSTADEVGVETMTMTDETLVDVLEVAEKVLVKVTDRIK 555
            ++AAA NA  A  ++ ER+    KID+FE AFRKIK+ATGVSDVNEVIQKIISQ+ T E+LM LTKENQAKIE LN  KA ++A VE+VKYSGPG GHRRKMVDDHEE ++++  RLER + K+ER  K+LIS+KAGV+HLQDKL    +++G   + +TDET+V VL   E++ + +T R+K
Sbjct:  268 RKAAAVNAITATMISQERLEQKNKIDIFEQAFRKIKDATGVSDVNEVIQKIISQEGTTENLMLLTKENQAKIEQLNDTKAGMKARVEEVKYSGPGGGHRRKMVDDHEEQLTSAATRLERCKLKYERLAKMLISIKAGVKHLQDKLAPVREDLGGRELDLTDETVVAVLVETERMSLTLTSRMK 450          
BLAST of mRNA_H-elongata_contig76218.15300.1 vs. uniprot
Match: A0A7S1TV28_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TV28_9STRA)

HSP 1 Score: 182 bits (461), Expect = 2.980e-51
Identity = 105/168 (62.50%), Postives = 126/168 (75.00%), Query Frame = 1
Query:   55 ERVSHSTKIDVFENAFRKIKEATGVSDVNEVIQKIISQDSTAESLMNLTKENQAKIESLNKRKAALRAAVEDVKYSGPGEGHRRKMVDDHEELVSNSLARLERVRHKHERQTKILISVKAGVEHLQDKLKSTADEVGVET-MTMTDETLVDVLEVAEKVLVKVTDRIK 555
            E+  H +KID+FENAFRKIKEATGVSDVNEVIQKI+SQ+ TAESLM LTKENQ KIE  N+ K  LR  +E++KYSG   GHRRKMVDD EE VS S  RLER R K+ER  K LIS KAGVEHLQDKL S  DE+ ++  + +TD+ +V+VL  +E  L K+  R+K
Sbjct:  293 EKAEHQSKIDIFENAFRKIKEATGVSDVNEVIQKIVSQEGTAESLMVLTKENQQKIEKYNETKNDLRRKIEEIKYSGANSGHRRKMVDDREEQVSASATRLERSRLKYERLAKSLISAKAGVEHLQDKLASVRDELNLDAPIDLTDDMVVEVLRQSETALEKMLQRVK 460          
BLAST of mRNA_H-elongata_contig76218.15300.1 vs. uniprot
Match: A0A8K1FFT5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFT5_PYTOL)

HSP 1 Score: 180 bits (457), Expect = 3.570e-50
Identity = 101/171 (59.06%), Postives = 136/171 (79.53%), Query Frame = 1
Query:   46 MAMERVSHSTKIDVFENAFRKIKEATGVSDVNEVIQKIISQDSTAESLMNLTKENQAKIESLNKRKAALRAAVEDVKYSGPGEGHRRKMVDDHEELVSNSLARLERVRHKHERQTKILISVKAGVEHLQDKLKSTADEVGVETMTMTDETLVDVLEVAEKVLVKVTDRIKV 558
            +A ER  H +KID+FE+AFRKIKEATGVSDVNEVIQKI+SQ+ST ++L+NL+KENQ ++E L    AAL+A VE++KYSG G GHRRKMVDDHE+ ++ + A+LER + K+ER  K+LISVKAGVEHL DKL+S  D+  V  + +TDET+VD L+ +E  L ++ +++KV
Sbjct:  314 VAEERKEHRSKIDIFESAFRKIKEATGVSDVNEVIQKIVSQESTTDNLINLSKENQVRLEHLQSEHAALKARVEELKYSGSGGGHRRKMVDDHEQNLALASAKLERAKLKYERLAKVLISVKAGVEHLVDKLESVRDDDQV--VIVTDETIVDALQESEMTLTRLMNQVKV 482          
BLAST of mRNA_H-elongata_contig76218.15300.1 vs. uniprot
Match: A0A2D4C5M1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5M1_PYTIN)

HSP 1 Score: 179 bits (453), Expect = 1.310e-48
Identity = 100/168 (59.52%), Postives = 134/168 (79.76%), Query Frame = 1
Query:   55 ERVSHSTKIDVFENAFRKIKEATGVSDVNEVIQKIISQDSTAESLMNLTKENQAKIESLNKRKAALRAAVEDVKYSGPGEGHRRKMVDDHEELVSNSLARLERVRHKHERQTKILISVKAGVEHLQDKLKSTADEVGVETMTMTDETLVDVLEVAEKVLVKVTDRIKV 558
            E+  H +KID+FE+AFRKIKEATGVSDVNEVIQKI+SQ+ST ++L+NL+KENQA++E L     AL+A VE++KYSG G GHRRKMVDDHE+ ++ + A+LER + K+ER  K+LISVKAGVEHL DKL+S  D+  V  + +TDET+VD L+ +E +L ++  +IKV
Sbjct:  935 EKKEHRSKIDIFESAFRKIKEATGVSDVNEVIQKIVSQESTTDNLINLSKENQARLEHLQAEHTALKARVEELKYSGSGGGHRRKMVDDHEQNLALATAKLERAKLKYERLAKVLISVKAGVEHLVDKLESVRDDDQV--VVVTDETIVDALQESETILGRLISQIKV 1100          
BLAST of mRNA_H-elongata_contig76218.15300.1 vs. uniprot
Match: A0A7S3ZSK6_9STRA (Hypothetical protein n=5 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSK6_9STRA)

HSP 1 Score: 173 bits (438), Expect = 4.750e-48
Identity = 96/168 (57.14%), Postives = 129/168 (76.79%), Query Frame = 1
Query:   55 ERVSHSTKIDVFENAFRKIKEATGVSDVNEVIQKIISQDSTAESLMNLTKENQAKIESLNKRKAALRAAVEDVKYSGPGEGHRRKMVDDHEELVSNSLARLERVRHKHERQTKILISVKAGVEHLQDKLKSTADEVGVETMTMTDETLVDVLEVAEKVLVKVTDRIKV 558
            ER    TKID+FE AFRKIKEATGVSDVNEVIQKII Q+ST E+LM+LT++NQ KIE+L+++K  ++  VE+VKYSGPG GHRRK+VD HE  ++++ ARLER R KHER T+++I+VKAGV+HLQDKL    +E+G   + +TD T   V+   E ++ ++  RI+V
Sbjct:  281 ERTEQRTKIDIFERAFRKIKEATGVSDVNEVIQKIIVQESTTENLMSLTRDNQQKIEALSEQKVGIKMHVEEVKYSGPGGGHRRKLVDKHEAQLASAAARLERCRIKHERLTRMVIAVKAGVKHLQDKLDGVREELGGRHIQLTDATTFRVMAENEIIMAELMARIRV 448          
BLAST of mRNA_H-elongata_contig76218.15300.1 vs. uniprot
Match: K3W817_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W817_GLOUD)

HSP 1 Score: 169 bits (428), Expect = 6.180e-46
Identity = 96/167 (57.49%), Postives = 128/167 (76.65%), Query Frame = 1
Query:   55 ERVSHSTKIDVFENAFRKIKEATGVSDVNEVIQKIISQDSTAESLMNLTKENQAKIESLNKRKAALRAAVEDVKYSGPGEGHRRKMVDDHEELVSNSLARLERVRHKHERQTKILISVKAGVEHLQDKLKSTADEVGVETMTMTDETLVDVLEVAEKVLVKVTDRIK 555
            E+  H +KID+FE+AFRKIKEATGVSDVNEVIQKI SQ+ST ++L+NL+KENQA++E L      L+A VE++KYSG G GHRRKMVDDHE+ +  + A+LER + K+ER  K+ I VKAGVEHL DKL+   D+  V  + +TDET+VD L+ +E  LV++ ++IK
Sbjct:  317 EKKEHRSKIDIFESAFRKIKEATGVSDVNEVIQKITSQESTTDNLINLSKENQARVEQLQAEHNNLKARVEELKYSGSGGGHRRKMVDDHEQNLVLASAKLERAKLKYERLAKVFIGVKAGVEHLVDKLECVRDDDQV--VVVTDETIVDALQESEMTLVRLLNQIK 481          
BLAST of mRNA_H-elongata_contig76218.15300.1 vs. uniprot
Match: A0A662Y3D2_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y3D2_9STRA)

HSP 1 Score: 165 bits (417), Expect = 2.000e-44
Identity = 93/167 (55.69%), Postives = 128/167 (76.65%), Query Frame = 1
Query:   55 ERVSHSTKIDVFENAFRKIKEATGVSDVNEVIQKIISQDSTAESLMNLTKENQAKIESLNKRKAALRAAVEDVKYSGPGEGHRRKMVDDHEELVSNSLARLERVRHKHERQTKILISVKAGVEHLQDKLKSTADEVGVETMTMTDETLVDVLEVAEKVLVKVTDRIK 555
            E+  H +KID+FE+AFRKIKEATGVSDVNEVIQKI SQ+ST ++L+NL+KENQA++E L    AAL+A VE++KYS    GHRRK+VDDHE+ +  + A+LER + K+ER  K+LI VKAGVEHL DK++S  ++  V  + +TDET+V+ L+ +E  L ++  +IK
Sbjct:  319 EKKEHRSKIDIFESAFRKIKEATGVSDVNEVIQKITSQESTTDNLLNLSKENQARLERLQAEHAALKARVEELKYSSSSGGHRRKLVDDHEQNLVLASAKLERAKLKYERLAKVLIGVKAGVEHLVDKMESVREDDQV--IAVTDETIVEALQESEVTLTRLLSQIK 483          
BLAST of mRNA_H-elongata_contig76218.15300.1 vs. uniprot
Match: A0A3R7G3K7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G3K7_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.850e-44
Identity = 92/167 (55.09%), Postives = 127/167 (76.05%), Query Frame = 1
Query:   55 ERVSHSTKIDVFENAFRKIKEATGVSDVNEVIQKIISQDSTAESLMNLTKENQAKIESLNKRKAALRAAVEDVKYSGPGEGHRRKMVDDHEELVSNSLARLERVRHKHERQTKILISVKAGVEHLQDKLKSTADEVGVETMTMTDETLVDVLEVAEKVLVKVTDRIK 555
            E+  H +KID+FE+AFRKIKEATGVSDVNEVIQKI SQ+ST ++L+NL+KENQA++E L      L+A VE++KYSG G GHRRK+VDDHE+ ++ +  +LER + K+ER  K+LI VKAGVEHL DK++S  ++  V  + +TDET+V+ L+ +E  L  +  +IK
Sbjct:  319 EKKEHRSKIDIFESAFRKIKEATGVSDVNEVIQKITSQESTTDNLLNLSKENQARLERLQAEHTVLKARVEELKYSGSGGGHRRKLVDDHEQNLALASTKLERAKLKYERLAKVLIGVKAGVEHLVDKMESVREDDQV--IVVTDETIVEALQESEITLAHLLSQIK 483          
BLAST of mRNA_H-elongata_contig76218.15300.1 vs. uniprot
Match: H3GET3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GET3_PHYRM)

HSP 1 Score: 164 bits (415), Expect = 3.800e-44
Identity = 92/167 (55.09%), Postives = 126/167 (75.45%), Query Frame = 1
Query:   55 ERVSHSTKIDVFENAFRKIKEATGVSDVNEVIQKIISQDSTAESLMNLTKENQAKIESLNKRKAALRAAVEDVKYSGPGEGHRRKMVDDHEELVSNSLARLERVRHKHERQTKILISVKAGVEHLQDKLKSTADEVGVETMTMTDETLVDVLEVAEKVLVKVTDRIK 555
            E+  H +KID+FE+AFRKIKEATGVSDVNEVIQKI SQ+ST ++L+NL+KENQA++E L      L+A VE++KYSG G GHRRK+VDDHE+ +  +  +LER + K+ER  K+LI VKAGVEHL DK++S  ++  V  + +TDET+V+ L+ +E  L  +  +IK
Sbjct:  319 EKKEHRSKIDIFESAFRKIKEATGVSDVNEVIQKITSQESTTDNLLNLSKENQARLERLQAEHTVLKARVEELKYSGSGGGHRRKLVDDHEQNLVLASTKLERAKLKYERLAKVLIGVKAGVEHLVDKMESVREDDQV--IVVTDETIVEALQESETTLAHLLSQIK 483          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76218.15300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1P2_ECTSI1.760e-8883.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2SGG0_9STRA2.460e-5559.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1TV28_9STRA2.980e-5162.50Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8K1FFT5_PYTOL3.570e-5059.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C5M1_PYTIN1.310e-4859.52Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S3ZSK6_9STRA4.750e-4857.14Hypothetical protein n=5 Tax=Pelagomonas calceolat... [more]
K3W817_GLOUD6.180e-4657.49Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662Y3D2_9STRA2.000e-4455.69Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A3R7G3K7_9STRA2.850e-4455.09Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3GET3_PHYRM3.800e-4455.09Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76218contigH-elongata_contig76218:167..2074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score289.7
Seed ortholog evalue1e-75
Seed eggNOG ortholog2880.D7G1P2
Preferred nameCCDC151
GOsGO:0000226,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0009605,GO:0009628,GO:0009629,GO:0009799,GO:0009855,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031344,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0033043,GO:0034622,GO:0035082,GO:0035253,GO:0036064,GO:0036158,GO:0040011,GO:0042330,GO:0042332,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044087,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0048060,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0060271,GO:0060491,GO:0061371,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0072359,GO:0097014,GO:0097542,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115
EggNOG free text desc.outer dynein arm assembly
EggNOG OGs28IVN@1,2QR7A@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_000490.1
Exons5
Model size558
Cds size558
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76218.15300.1prot_H-elongata_contig76218.15300.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76218 167..2074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.900807-CDS-H-elongata_contig76218:166..2831622931166.900807-CDS-H-elongata_contig76218:166..283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76218 167..283 +
1691679725.715102-CDS-H-elongata_contig76218:166..2831691679725.715102-CDS-H-elongata_contig76218:166..283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76218 167..283 +
1622931166.9132001-CDS-H-elongata_contig76218:713..8091622931166.9132001-CDS-H-elongata_contig76218:713..809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76218 714..809 +
1691679725.7258558-CDS-H-elongata_contig76218:713..8091691679725.7258558-CDS-H-elongata_contig76218:713..809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76218 714..809 +
1622931166.9276538-CDS-H-elongata_contig76218:997..10931622931166.9276538-CDS-H-elongata_contig76218:997..1093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76218 998..1093 +
1691679725.7333193-CDS-H-elongata_contig76218:997..10931691679725.7333193-CDS-H-elongata_contig76218:997..1093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76218 998..1093 +
1622931166.9448078-CDS-H-elongata_contig76218:1638..17881622931166.9448078-CDS-H-elongata_contig76218:1638..1788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76218 1639..1788 +
1691679725.7419508-CDS-H-elongata_contig76218:1638..17881691679725.7419508-CDS-H-elongata_contig76218:1638..1788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76218 1639..1788 +
1622931166.9632986-CDS-H-elongata_contig76218:1975..20741622931166.9632986-CDS-H-elongata_contig76218:1975..2074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76218 1976..2074 +
1691679725.7614424-CDS-H-elongata_contig76218:1975..20741691679725.7614424-CDS-H-elongata_contig76218:1975..2074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76218 1976..2074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76218.15300.1

>prot_H-elongata_contig76218.15300.1 ID=prot_H-elongata_contig76218.15300.1|Name=mRNA_H-elongata_contig76218.15300.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
GEKQAAAANANVAKKMAMERVSHSTKIDVFENAFRKIKEATGVSDVNEVI
QKIISQDSTAESLMNLTKENQAKIESLNKRKAALRAAVEDVKYSGPGEGH
RRKMVDDHEELVSNSLARLERVRHKHERQTKILISVKAGVEHLQDKLKST
ADEVGVETMTMTDETLVDVLEVAEKVLVKVTDRIKV
back to top

mRNA from alignment at H-elongata_contig76218:167..2074+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76218.15300.1 ID=mRNA_H-elongata_contig76218.15300.1|Name=mRNA_H-elongata_contig76218.15300.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1908bp|location=Sequence derived from alignment at H-elongata_contig76218:167..2074+ (Himanthalia elongata Himel1 dioecious)
GGTGAAAAGCAGGCAGCTGCCGCCAACGCGAACGTCGCGAAGAAGATGGC AATGGAACGCGTCAGTCACAGTACTAAGATTGATGTATTCGAGAACGCGT TCCGGAAGATCAAAGAGGTGGGTAGAGCTACGGTCTGTTAGCGTACCGAG TGTAAAAAGGGGAGCCGGGGGGAAGGGAGGAGGTCGATGACAGCAGACGT GAAAGGACGCCCAGCATCCTAAATGAAAGAAAAATGTGACCTCGATTATA GAAACCAGAAACACCGAGAGCTAGCTAGTACTGTATATTAGAGATTATAT GCAGTAACATAAAACGGTCGAGGAGGGTAGACGCTTCGTCAAGAAATACC AAGTTCCCGAAGCAGCTGCTTTGAAGGTATAGTGACGACTGCCACCCTTC CACCCCCTTTACCTTTCATCGATACTCGAATTTCATTATATAGCTGAATT TTAAAAAGAACCGCGGGGTCTTGGGCCTCGAGCGTAGAGTGAACGCGATG TGATCAATTCGTCGTAACGGTGCTGGCCCTTTATTTTTTCGTGGAAGGCC ACAGGAGTTTCGGACGTGAACGAGGTGATCCAGAAGATCATCAGCCAGGA TAGCACTGCGGAAAGTCTTATGAACCTCACGAAGGAGAACCAGGTGTCCA TCGACATCACTACATGCCCTCTGCCATAAGCTTTATATACTAAGGAACAA AGAGAGGCTTTGTAGGGCGAAAATGTTGTCTTTTGTGCAGATATCCCCCT TCGCTCGCTCTCGGGTTTCGGCGAGCTGCCAAAATACGCTTAGTGATTGG TACCGCCATAAATAATTTCATGCCGCTATAGGCCAAGATCGAAAGCTTGA ACAAACGCAAGGCGGCGTTAAGGGCAGCGGTGGAAGACGTCAAGTACTCG GGTCCCGGCGAAGGTCATCGCCGAAAGGTCGGTTGTATCGACGAGTCGAA ATCAACTATCAAACGAAGTGTGGAAGCCTGACGCATTTTTTGCCGTTTGA GGCGGAAAATATTGCGTGAAACAACCTCCCCAGCATGCACTTGAGGCATA AATTCTGAACTAGGCGTTCGTCAAAGCATCCACGCATTGCTTGTCTAGAA GGCAAAATTTATATCCAACATAAAATGAGTGGATACTGAAACTTATCAGG GAGATATCTGAACATAAATGAAATATAACCTTGGTCCAATGAGAAACGGA AATAAGTATAATTTACACTCTCATCCAGATGCAGCGCCCCACCTCAGGAT ATATACTGGAATAATATTCGTCGTGGACTTCAAACGACTTCACTGCTGAC GCGAGCTCGATACAAAACTGCCGATTGTGTTGCGTTGTACAATTGCTTGC TTCTCTTTTCTTTTCATTCACTTCCACCCCCAGAGCTTTCCCAGCCTTAC CCTCGCGATAACCGAACCAACCTGCGTGTCACGCTTTTGGCGACGCAAAT GGGGATCACGTCACATGGGTAGATGGTGGATGACCACGAAGAACTCGTAT CAAATAGCTTGGCGCGGCTCGAGCGGGTTAGGCACAAACACGAGCGGCAG ACGAAGATCCTCATCAGCGTGAAGGCTGGAGTGGAGCACCTTCAGGACAA GCTTAAGAGCACGGCGGATGAGGTTAAATATTTCAAAAGCAAATTCTTCG CCGAGTTAGCCTGCAAGCAATCGGAGACCGACGCATCCAGTTGTTTAATA ATGGTTCCCTGTGGACATAACTAGCGTGTGTGACTCATCATTATCGGGCG TAACTCGAGCCACCAAGATTCAATAGCTTGTATCTGTTCCGGGCGTTTCC CGCGTGCAGGTCGGGGTGGAGACCATGACGATGACCGATGAAACTTTGGT GGATGTTCTCGAAGTCGCTGAGAAGGTGTTGGTGAAAGTTACCGATAGAA TCAAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig76218:167..2074+

>mRNA_H-elongata_contig76218.15300.1 ID=mRNA_H-elongata_contig76218.15300.1|Name=mRNA_H-elongata_contig76218.15300.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig76218:167..2074+ (Himanthalia elongata Himel1 dioecious)
GGTGAAAAGCAGGCAGCTGCCGCCAACGCGAACGTCGCGAAGAAGATGGC
AATGGAACGCGTCAGTCACAGTACTAAGATTGATGTATTCGAGAACGCGT
TCCGGAAGATCAAAGAGGGTGAAAAGCAGGCAGCTGCCGCCAACGCGAAC
GTCGCGAAGAAGATGGCAATGGAACGCGTCAGTCACAGTACTAAGATTGA
TGTATTCGAGAACGCGTTCCGGAAGATCAAAGAGGCCACAGGAGTTTCGG
ACGTGAACGAGGTGATCCAGAAGATCATCAGCCAGGATAGCACTGCGGAA
AGTCTTATGAACCTCACGAAGGAGAACCAGGCCACAGGAGTTTCGGACGT
GAACGAGGTGATCCAGAAGATCATCAGCCAGGATAGCACTGCGGAAAGTC
TTATGAACCTCACGAAGGAGAACCAGGCCAAGATCGAAAGCTTGAACAAA
CGCAAGGCGGCGTTAAGGGCAGCGGTGGAAGACGTCAAGTACTCGGGTCC
CGGCGAAGGTCATCGCCGAAAGGCCAAGATCGAAAGCTTGAACAAACGCA
AGGCGGCGTTAAGGGCAGCGGTGGAAGACGTCAAGTACTCGGGTCCCGGC
GAAGGTCATCGCCGAAAGATGGTGGATGACCACGAAGAACTCGTATCAAA
TAGCTTGGCGCGGCTCGAGCGGGTTAGGCACAAACACGAGCGGCAGACGA
AGATCCTCATCAGCGTGAAGGCTGGAGTGGAGCACCTTCAGGACAAGCTT
AAGAGCACGGCGGATGAGATGGTGGATGACCACGAAGAACTCGTATCAAA
TAGCTTGGCGCGGCTCGAGCGGGTTAGGCACAAACACGAGCGGCAGACGA
AGATCCTCATCAGCGTGAAGGCTGGAGTGGAGCACCTTCAGGACAAGCTT
AAGAGCACGGCGGATGAGGTCGGGGTGGAGACCATGACGATGACCGATGA
AACTTTGGTGGATGTTCTCGAAGTCGCTGAGAAGGTGTTGGTGAAAGTTA
CCGATAGAATCAAGGTGGTCGGGGTGGAGACCATGACGATGACCGATGAA
ACTTTGGTGGATGTTCTCGAAGTCGCTGAGAAGGTGTTGGTGAAAGTTAC
CGATAGAATCAAGGTG
back to top