mRNA_H-elongata_contig76137.15295.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76137.15295.1
Unique NamemRNA_H-elongata_contig76137.15295.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76137.15295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76137contigH-elongata_contig76137:1488..2110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAT hook and RING/FYVE/PHD-type zinc finger protein
Ec32 orthologEc-25_000880.1
Exons2
Model size213
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76137.15295.1prot_H-elongata_contig76137.15295.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76137 1492..2110 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.5027823-UTR-H-elongata_contig76137:1487..14911622931166.5027823-UTR-H-elongata_contig76137:1487..1491Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76137 1488..1491 +
1691679725.5467024-UTR-H-elongata_contig76137:1487..14911691679725.5467024-UTR-H-elongata_contig76137:1487..1491Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76137 1488..1491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.5355628-CDS-H-elongata_contig76137:1491..15391622931166.5355628-CDS-H-elongata_contig76137:1491..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76137 1492..1539 +
1691679725.5564442-CDS-H-elongata_contig76137:1491..15391691679725.5564442-CDS-H-elongata_contig76137:1491..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76137 1492..1539 +
1622931166.5499518-CDS-H-elongata_contig76137:1951..21101622931166.5499518-CDS-H-elongata_contig76137:1951..2110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76137 1952..2110 +
1691679725.5670462-CDS-H-elongata_contig76137:1951..21101691679725.5670462-CDS-H-elongata_contig76137:1951..2110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76137 1952..2110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76137.15295.1

>prot_H-elongata_contig76137.15295.1 ID=prot_H-elongata_contig76137.15295.1|Name=mRNA_H-elongata_contig76137.15295.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MINLRRGRCQIEGCPKPPTRILIGGQKVRFCKEHWPSDMSRECGHPEGCG
RLATHAPPPEVKAEVVTSA
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mRNA from alignment at H-elongata_contig76137:1488..2110+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76137.15295.1 ID=mRNA_H-elongata_contig76137.15295.1|Name=mRNA_H-elongata_contig76137.15295.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=623bp|location=Sequence derived from alignment at H-elongata_contig76137:1488..2110+ (Himanthalia elongata Himel1 dioecious)
AGGAATGATCAACCTGCGGCGCGGGAGGTGTCAAATCGAGGGCTGCCCGA
AGGTTCGCTCTCGAGAGAACGCCCCCCCCCCCAGTCCTTGGGTGTGTATG
AACTTACTTGTTTTTACTGTCGGAACCACGTTGATTCATTGCCCCCCGAA
GGTCCCTCGAAGGTCCCTCGAAGGTCGTCATTCATCGTGCAAACATTGGC
ATTGACTTTGACCCACTCGCGGTTCATCCTTGGCATCGAACGTTCGCCCT
TGAAATCGCCCTGAGTAACGCGGTATCAATACTAGCAGGGTATATTACGA
CTCCCTTTCCACCTTGACCTTGCCAACGCCTTGTGTATCTGGTCCCATCC
CCCCCCTAACCACACCTTGGAACAAAGCGTGTTGACTCAAGCTGCAGCGA
AAATAAAGCGTGTTGACTCGCCCTCGTTGCGTTCGTTCGTCGGCCTTCTT
GATGACCATCGCAGCCTCCGACCCGTATTCTTATCGGCGGGCAAAAGGTT
CGCTTCTGCAAGGAGCATTGGCCTTCTGACATGTCCCGCGAGTGCGGCCA
TCCTGAGGGATGCGGTCGACTCGCGACGCACGCTCCCCCCCCCGAAGTGA
AAGCCGAGGTTGTGACCTCGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig76137:1488..2110+

>mRNA_H-elongata_contig76137.15295.1 ID=mRNA_H-elongata_contig76137.15295.1|Name=mRNA_H-elongata_contig76137.15295.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig76137:1488..2110+ (Himanthalia elongata Himel1 dioecious)
ATGATCAACCTGCGGCGCGGGAGGTGTCAAATCGAGGGCTGCCCGAAGAT
GATCAACCTGCGGCGCGGGAGGTGTCAAATCGAGGGCTGCCCGAAGCCTC
CGACCCGTATTCTTATCGGCGGGCAAAAGGTTCGCTTCTGCAAGGAGCAT
TGGCCTTCTGACATGTCCCGCGAGTGCGGCCATCCTGAGGGATGCGGTCG
ACTCGCGACGCACGCTCCCCCCCCCGAAGTGAAAGCCGAGGTTGTGACCT
CGGCGCCTCCGACCCGTATTCTTATCGGCGGGCAAAAGGTTCGCTTCTGC
AAGGAGCATTGGCCTTCTGACATGTCCCGCGAGTGCGGCCATCCTGAGGG
ATGCGGTCGACTCGCGACGCACGCTCCCCCCCCCGAAGTGAAAGCCGAGG
TTGTGACCTCGGCG
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