mRNA_H-elongata_contig7612.15292.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7612.15292.1
Unique NamemRNA_H-elongata_contig7612.15292.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7612.15292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7612contigH-elongata_contig7612:3535..4215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size681
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7612.15292.1prot_H-elongata_contig7612.15292.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7612 3582..3923 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.3035188-UTR-H-elongata_contig7612:3534..35811622931166.3035188-UTR-H-elongata_contig7612:3534..3581Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7612 3535..3581 +
1691679725.461877-UTR-H-elongata_contig7612:3534..35811691679725.461877-UTR-H-elongata_contig7612:3534..3581Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7612 3535..3581 +
1622931166.3407423-UTR-H-elongata_contig7612:3923..42151622931166.3407423-UTR-H-elongata_contig7612:3923..4215Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7612 3924..4215 +
1691679725.4913661-UTR-H-elongata_contig7612:3923..42151691679725.4913661-UTR-H-elongata_contig7612:3923..4215Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7612 3924..4215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.3240886-CDS-H-elongata_contig7612:3581..39231622931166.3240886-CDS-H-elongata_contig7612:3581..3923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7612 3582..3923 +
1691679725.4792047-CDS-H-elongata_contig7612:3581..39231691679725.4792047-CDS-H-elongata_contig7612:3581..3923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7612 3582..3923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7612.15292.1

>prot_H-elongata_contig7612.15292.1 ID=prot_H-elongata_contig7612.15292.1|Name=mRNA_H-elongata_contig7612.15292.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MRHAGTRADAVAVTTMPELAATVVATKVAGIEDGDKPATNPVALREGVGG
IKAEVPVATVANAAAIVPQAMRIRQIGNGTEGARGRAIVVVRRDCVSNAS
RIGQSSVPRDSSP*
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mRNA from alignment at H-elongata_contig7612:3535..4215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7612.15292.1 ID=mRNA_H-elongata_contig7612.15292.1|Name=mRNA_H-elongata_contig7612.15292.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=681bp|location=Sequence derived from alignment at H-elongata_contig7612:3535..4215+ (Himanthalia elongata Himel1 dioecious)
GGGGACTGATCGCACCGGTAGCAGCCGCACGATCAGTGGAAGCGACGATG
AGGCATGCGGGGACTCGTGCGGACGCGGTTGCAGTGACCACGATGCCGGA
GCTGGCCGCCACTGTCGTGGCAACGAAGGTTGCAGGAATTGAGGATGGGG
ATAAACCGGCCACCAACCCCGTAGCGTTGAGGGAGGGGGTCGGAGGGATC
AAGGCGGAAGTACCCGTCGCGACAGTGGCGAATGCGGCGGCGATCGTCCC
ACAAGCGATGAGAATCCGCCAGATCGGAAACGGTACGGAGGGGGCAAGGG
GGAGAGCGATAGTGGTAGTCCGGCGTGATTGCGTAAGCAACGCAAGCAGG
ATAGGCCAATCCAGCGTCCCCAGGGATAGCTCCCCATAAGGGGGGAGTAT
TTGCAAACCGGCGTGGTGCCCCCTTACATGTCTTACCGGTTTGCGCAGTT
TAATGCAGGTTGATAAAAAGGGCAATAATTTTCCCCTGTCCCCGTTCTCG
CCTGAGAATTTGGTCTCGCGAGACGGGTTTAGCAGTCCCGTCCCGCGTCA
GCCCGTTCTCTCAACCCAGGCAGAATATATGTGAATTCTATGTGTGTATT
TATTAATAGTGTACGTAAATAACCGCGCAATCCGGCCCTGTCATGCTAGT
CATAGTAATTCTAGGCTACTCTCGCATTGAT
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Coding sequence (CDS) from alignment at H-elongata_contig7612:3535..4215+

>mRNA_H-elongata_contig7612.15292.1 ID=mRNA_H-elongata_contig7612.15292.1|Name=mRNA_H-elongata_contig7612.15292.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig7612:3535..4215+ (Himanthalia elongata Himel1 dioecious)
ATGAGGCATGCGGGGACTCGTGCGGACGCGGTTGCAGTGACCACGATGCC
GGAGCTGGCCGCCACTGTCGTGGCAACGAAGGTTGCAGGAATTGAGGATG
GGGATAAACCGGCCACCAACCCCGTAGCGTTGAGGGAGGGGGTCGGAGGG
ATCAAGGCGGAAGTACCCGTCGCGACAGTGGCGAATGCGGCGGCGATCGT
CCCACAAGCGATGAGAATCCGCCAGATCGGAAACGGTACGGAGGGGGCAA
GGGGGAGAGCGATAGTGGTAGTCCGGCGTGATTGCGTAAGCAACGCAAGC
AGGATAGGCCAATCCAGCGTCCCCAGGGATAGCTCCCCATAAATGAGGCA
TGCGGGGACTCGTGCGGACGCGGTTGCAGTGACCACGATGCCGGAGCTGG
CCGCCACTGTCGTGGCAACGAAGGTTGCAGGAATTGAGGATGGGGATAAA
CCGGCCACCAACCCCGTAGCGTTGAGGGAGGGGGTCGGAGGGATCAAGGC
GGAAGTACCCGTCGCGACAGTGGCGAATGCGGCGGCGATCGTCCCACAAG
CGATGAGAATCCGCCAGATCGGAAACGGTACGGAGGGGGCAAGGGGGAGA
GCGATAGTGGTAGTCCGGCGTGATTGCGTAAGCAACGCAAGCAGGATAGG
CCAATCCAGCGTCCCCAGGGATAGCTCCCCATAA
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