mRNA_H-elongata_contig76085.15288.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76085.15288.1
Unique NamemRNA_H-elongata_contig76085.15288.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76085.15288.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 209 bits (532), Expect = 3.090e-57
Identity = 126/348 (36.21%), Postives = 184/348 (52.87%), Query Frame = 1
Query:   10 TMGEAQASSEWPQWKREIAREMDGQTARGVWQVVERPKAKTVLSTRVVFKRKIDNDGRIEKYKCRLVAQGFRQVKGIHYKESSSPTPAQASIRMVLNTIAALGWKVRQLDVGMVYLEADVEED--IYVELPEAYL--DSRNQVGLRKKAMYGLVHAGLLWSKQFGIELEAKGFQRSQAN--------------------PC----------EQAVRDLCSCFPIKDLGEASYYLGCHIRWDRNAGTLKFDQHQYIQTVVESFGVT--KTSIVPSAAGGKALSKSDSPQTDAEVEEMR*ITYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 945
            T+ EA+   +WP+W   I  E++     G W++V+RP A  V+ ++ V + K D  G I+KYK RLVAQGF Q+ GI Y E+ +P    +SIR++L   A  GW ++  D    YL + +++D  IY+E P  +   D +N V   +KA+YGL   G  W +   I L   GF R++++                     C           +  R +   +P+ DLGE S+ LG  +  DR A TL   QH YI +++  F  T  K S +P     + L+KS  P + A++  MR I YRE +G+LM AA  TRPDISFA   LA+F+ NPG THW A ++  +YL
Sbjct:  965 TLEEARKRPDWPKWLAAIRAELESLKLNGTWELVDRPSAVNVVGSKWVLRIKKDASGAIDKYKARLVAQGFTQIHGIDYFETFAPVAKLSSIRLILAIAARNGWDIQSFDFNSAYLNSTLDDDEVIYLEQPPDFAEKDPKNYVLRLRKALYGLKQGGRKWYEHLCIALADLGFNRAESDYGVFFAIDANNITVLAIHVDDCAITGSSTPLISEYKRRIGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQ-LTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYL 1311          
BLAST of mRNA_H-elongata_contig76085.15288.1 vs. uniprot
Match: A0A401H6Z2_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H6Z2_9APHY)

HSP 1 Score: 208 bits (530), Expect = 5.430e-57
Identity = 125/349 (35.82%), Postives = 185/349 (53.01%), Query Frame = 1
Query:    1 EPTTMGEAQASSEWPQWKREIAREMDGQTARGVWQVVERPKAKTVLSTRVVFKRKIDNDGRIEKYKCRLVAQGFRQVKGIHYKESSSPTPAQASIRMVLNTIAALGWKVRQLDVGMVYLEADVEEDIYVELP--EAYLDSRNQVGLRKKAMYGLVHAGLLWSKQFGIELEAKGFQRSQANPC------EQAV-------------------------RDLCSCFPIKDLGEASYYLGCHIRWDRNAGTLKFDQHQYIQTVVESFGVTKT-SIVPSAAGGKALSKSDSPQTDAEVEEMR*ITYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 945
            +P ++ EA  S+EWP+W   IA+EM    + G + +VE PK   ++ ++ VF+ K + +G IE YK RLVAQGF QV GI + E+ +P    ASIR++L   A   W++ Q+DV  VYL  D+EE+IY+  P  +A     + V   K+ +YGL  +G  + K+   EL + G  RS+ + C      E+ V                         R++   F + DLGE  + LG  +R DR+A TL   Q  YI  ++  F +    S+      G  LS    P T  + E+M+ I YRE +G+LM AA  TRPDI++A   L++F  NPG  HW AA++  +YL
Sbjct:  744 DPASLNEAMQSTEWPKWTEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILTLAAHYDWELHQMDVKGVYLNGDLEEEIYMWQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCIFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISMHFEMSDLGEMHWILGIEVRRDRDARTLSLSQCAYIDMILARFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMKNPGRPHWEAAKRVFRYL 1092          
BLAST of mRNA_H-elongata_contig76085.15288.1 vs. uniprot
Match: A0A6A3JRZ2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JRZ2_9STRA)

HSP 1 Score: 190 bits (483), Expect = 9.870e-55
Identity = 120/331 (36.25%), Postives = 168/331 (50.76%), Query Frame = 1
Query:   28 ASSEWPQWKREIAREMDGQTARGVWQVVERPKAKTVLSTRVVFKRKIDNDGRIEKYKCRLVAQGFRQVKGIHYKESSSPTPAQASIRMVLNTIAALGWKVRQLDVGMVYLEADVEEDIYVELPEAYLDSRNQVGLRKKAMYGLVHAGLLWSKQFGIELEAKGFQRSQANPCEQAVRD------------------------------LCSCFPIKDLGEASYYLGCHIRWDRNAGTLKFDQHQYIQTVVESFGVTKTSIV--PSAAGGKALSKSDSPQTDAEVEEMR*ITYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGPTHWRAA 924
            AS +  QW+  +  E+      G W +V R  A   +  R VF +K D  GR+ +YK RLVA+GF+Q  GI + E+ SP     SIR+VL+  AA  +++ QLD    +L +++++ +Y+E+P    ++R+      KA+YGL  A   W+K         GF+   A+ C    R                               L + F +K+LG A + LG  I  D  AGTLK  Q +YI  VV+ FG      V  P AAG K LSK+ SP TDAE   MR   YR ++G L+   T TRPDI+F A QL++F +NPG  HW AA
Sbjct:    2 ASDDAAQWREAMDAELLSHERNGTWTLVPRGTANRTIGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSIRVVLSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARDYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCLYVDDMIIAAKTSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKQTRYIDDVVKRFGQENAKPVDNPCAAGLK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFMATQLSRFLENPGQQHWNAA 331          
BLAST of mRNA_H-elongata_contig76085.15288.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 202 bits (513), Expect = 1.070e-54
Identity = 126/353 (35.69%), Postives = 182/353 (51.56%), Query Frame = 1
Query:    1 EPTTMGEAQASSEWPQWKREIAREMDGQTARGVWQVVERPKAKTVLSTRVVFKRKIDNDGRIEKYKCRLVAQGFRQVKGIHYKESSSPTPAQASIRMVLNTIAALGWKVRQLDVGMVYLEADVEEDIYVELP--EAYLDSRNQVGLRKKAMYGLVHAGLLWSKQFGIELEAKGFQRSQANPC---------------------------EQAV----RDLCSCFPIKDLGEASYYLGCHIRWDRNAGTLKFDQHQYIQTVVESFGVT-----KTSIVPSAAGGKALSKSDSPQTDAEVEEMR*ITYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 945
            EP ++ EA  S +WPQW++ I +EM        + +VE P+   V+ ++ VF+ K + +G+IE YK RLVAQGF Q+ GI + ++ +P    ASIR++L   A   W V Q+DV   YL AD+EE+I+++ P  +A     + V L + A+YGL  +G  W K+    L+  G  RS  + C                             AV     ++   F + DLGE  + LG  +R DR A TL   Q  YI  ++  F +       T + P    G  LS    P T  E E+MR + YRE +G+LM AA  TRPDI+FA   L++F  NPG  HW AA++ L+YL
Sbjct:  959 EPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNLEDAKPLSTPLEP----GAILSIRQCPSTPREFEDMRNVPYREAIGSLMYAALGTRPDIAFAVTALSQFMQNPGRAHWEAAKRVLRYL 1307          
BLAST of mRNA_H-elongata_contig76085.15288.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 199 bits (505), Expect = 1.210e-53
Identity = 120/342 (35.09%), Postives = 173/342 (50.58%), Query Frame = 1
Query:   19 EAQASSEWPQWKREIAREMDGQTARGVWQVVERPKAKTVLSTRVVFKRKIDNDGRIEKYKCRLVAQGFRQVKGIHYKESSSPTPAQASIRMVLNTIAALGWKVRQLDVGMVYLEADVEEDIYVELP--EAYLDSRNQVGLRKKAMYGLVHAGLLWSKQFGIELEAKGFQRSQAN--------------------PC----------EQAVRDLCSCFPIKDLGEASYYLGCHIRWDRNAGTLKFDQHQYIQTVVESFGVTKTSIVPSAAGG-KALSKSDSPQTDAEVEEMR*ITYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 945
            EA+   +WP+W+  I  E+D   A G W++V RP +  V+ ++ V + K +  G I+KYK RLVA+GF QV G+ Y ++ +P    +SIR++L   A  GW     D    YL + ++ED+Y+E P   A+ D +  V   +KA+YGL   G  W +     L   GF R +A+                     C          +     + + + I DLG  S+ LG  I  D  AGTL   QH YI+ ++  F  T    V       + LSK+  P++ AEV  MR + YRE +GALM AA  TRPDI+FA   LA+F  NPG  HW A ++  +YL
Sbjct:  803 EAKKRPDWPKWQEAIKAELDSLVANGTWRIVPRPSSGNVVDSKWVLRVKKNAAGEIDKYKARLVARGFTQVYGVDYYDTFAPVAKLSSIRLLLAIAARNGWAADSFDFNSAYLNSKLDEDVYLEQPPDHAFADRKAFVLKLEKALYGLKQGGRKWYETLCAALGRLGFTRVEADWGVFYKHEGEHLIVLAVHVDDCLLTGSSRRLLDDTKSKIGTVYKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPHWDAVKRIFRYL 1144          
BLAST of mRNA_H-elongata_contig76085.15288.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 196 bits (497), Expect = 6.680e-53
Identity = 122/346 (35.26%), Postives = 178/346 (51.45%), Query Frame = 1
Query:    1 EPTTMGEAQASSEWPQWKREIAREMDGQTARGVWQVVERPKAKTVLSTRVVFKRKIDNDGRIEKYKCRLVAQGFRQVKGIHYKESSSPTPAQASIRMVLNTIAALGWKVRQLDVGMVYLEADVEEDIYVELPEAYLDSRNQVGLRKKAMYGLVHAGLLWSKQFGIELEAK-GFQRSQANPCEQ-------------------AVRD-----------LCSCFPIKDLGEASYYLGCHIRWDRNAGTLKFDQHQYIQTVVESFGVTKTSIVPSAAGGKALSKSDSPQTDAEVEEMR*ITYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 945
            EP T+ EAQA+ EWP+WKR +  E+      G +   + P  +  +  R V++ K D+DGRI +YK RLVAQGF Q  G+ Y E+ +P     S+R++L   A    ++ Q DV   YL AD++E+IY+  P  Y +  + +   +KA+YGL  AG  W+      L A  GFQR  ++PC                     A+ D           L   + I DLG     LG  I  DR   TL   Q QYIQTV++ F +   + V +        K      DA++ EM+ + Y+ ++G+LM AA  TRPDIS+A   L++++  PG THW AA++ L+YL
Sbjct:   14 EPRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPKGLTIVGMHVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKMADCNPVTTPLDPNV--KLCKEPEDADLSEMKGVPYQALIGSLMYAALGTRPDISYAVQALSQYSARPGITHWTAAKRVLRYL 357          
BLAST of mRNA_H-elongata_contig76085.15288.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 191 bits (485), Expect = 1.610e-52
Identity = 117/332 (35.24%), Postives = 170/332 (51.20%), Query Frame = 1
Query:    1 EPTTMGEAQASSEWPQWKREIAREMDGQTARGVWQVVERPKAKTVLSTRVVFKRKIDNDGRIEKYKCRLVAQGFRQVKGIHYKESSSPTPAQASIRMVLNTIAALGWKVRQLDVGMVYLEADVEEDIYVELPEAYLDSRNQVGLR-KKAMYGLVHAGLLWSKQFGIELEAKG--------------FQRSQANPCEQAVRDLCSCFPIKDLGEASYYLGCHIRWDRNAGTLKFDQHQYIQTVVESFGVT--KTSIVPSAAGGKALSKSDSPQTDAEVEEMR*ITYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 945
            EP T  +A  S    QW+  +  EM    + G W +VE P  +  + ++ V++ K   DG IE++K RLVA+GF Q  G  Y E+ + T  Q ++R VL   A     +R +D+   ++ +D++ +IY+  PE +     ++  R  K++YGL  A  LW ++ GI +                        +  ++ V  L   F ++DLG  SY LG  I  +R    L   Q QYI   +E FG+T  K +  P       LSKS SPQT  EVEEM  I Y   VG+L+  ATMTRPDI++ A  LA+FN NPG  HW+A +  L+YL
Sbjct:  103 EPVTYRQAITSPNAEQWQEAMIEEMTAHLSNGTWNLVELPPGQKAIGSKWVYRIKHKADGSIERFKARLVAKGFSQRLGFDYSETFASTMRQNTLRTVLALAAVEDLHLRSIDISHAFINSDIDTEIYMTQPEGFRQGGPRIVCRLDKSLYGLKQAPRLWDEKLGIYIYQNDNVKVIVPVFVDDITLASKSEDMLDEFVAKLSKHFKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCKPATTPMTPN-LILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVLRYL 433          
BLAST of mRNA_H-elongata_contig76085.15288.1 vs. uniprot
Match: A0A6A4CLK4_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=10 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CLK4_9STRA)

HSP 1 Score: 188 bits (478), Expect = 3.470e-52
Identity = 120/339 (35.40%), Postives = 173/339 (51.03%), Query Frame = 1
Query:   28 ASSEWPQWKREIAREMDGQTARGVWQVVERPKAKTVLSTRVVFKRKIDNDGRIEKYKCRLVAQGFRQVKGIHYKESSSPTP-AQASIRMVLNTIAALGWKVRQLDVGMVYLEADVEEDIYVELPEAYLDSRNQVGLRKKAMYGLVHAGLLWSKQFGIELEAKGFQRSQANPC--------------------------EQAVRD----LCSCFPIKDLGEASYYLGCHIRWDRNAGTLKFDQHQYIQTVVESFGVTKTSIV--PSAAGGKALSKSDSPQTDAEVEEMR*ITYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 945
            AS +  QW+  +  E+      G W +V R  A   +  R VF +K D  GR+ +YK RLVA+GF+Q  GI + E+ SP     +++R+VL+  AA  +++ QLD    +L +++++ +Y+E+P    ++R       KA+YGL  A   W+K         GF+   A+ C                           + +RD    L + F +K+LG A + LG  I  D  AGTLK    +YI  VVE FG      V  P AAG K LSK+ SP TDAE   MR   YR ++G L+   T TRPDI+F   QL++F +NP   HW AA + L+YL
Sbjct:    2 ASDDAEQWREAMDAELLSHERNGTWTLVPRGTASRTIGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSTLRVVLSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARGYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCLYVDDMIIAAKTSEEIRDVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKPTRYIDDVVEHFGQENAKPVDNPCAAGLK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPEKQHWNAAVRVLRYL 339          
BLAST of mRNA_H-elongata_contig76085.15288.1 vs. uniprot
Match: A0A4S4K4Q2_9APHY (Uncharacterized protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K4Q2_9APHY)

HSP 1 Score: 194 bits (492), Expect = 6.770e-52
Identity = 127/348 (36.49%), Postives = 175/348 (50.29%), Query Frame = 1
Query:   10 TMGEAQASSEWPQWKREIAREMDGQTARGVWQVVERPKAKTVLSTRVVFKRKIDNDGRIEKYKCRLVAQGFRQVKGIHYKESSSPTPAQASIRMVLNTIAALGWKVRQLDVGMVYLEA--DVEEDIYVELPEAYL--DSRNQVGLRKKAMYGLVHAGLLWSKQFGIELEAKGFQRSQAN--------------------PC----------EQAVRDLCSCFPIKDLGEASYYLGCHIRWDRNAGTLKFDQHQYIQTVVESFGVT--KTSIVPSAAGGKALSKSDSPQTDAEVEEMR*ITYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 945
            T+ EA+   +W +W   I  E++       W VVERP    V+ ++ V + K D  G I+KYK RLVAQGF QV G+ Y E+ +P    ASIR+VL   A  GW+V+  D    YL +  D +E+IY+E P  +   D +  V   KKA+YGL   G  W +   I L   GF+R++A+                     C           Q  R L   + + DLG  S+ LG  +  D  A TL   QH YI +++  F  T  K S +P     + L KS  P +  ++  MR I YRE +G+LM AA  TRPDISFA   LA+F+ NPG  HW A ++  +YL
Sbjct:  965 TLEEARKRPDWAKWLAAIKAELESLIRNDTWTVVERPLGVNVVGSKWVLRIKKDATGAIDKYKARLVAQGFTQVYGVDYFETFAPVAKIASIRLVLAIAARNGWEVQSFDFNSAYLNSVLDDDEEIYLEQPPQFSLKDPKLHVLRLKKALYGLKQGGRKWYEHLCIALADLGFKRAEADYGVFYAKVGESLVLLAIHVDDCIITGNSSTLISQYKRQLGDKYSLTDLGPVSWLLGIKVTRDLEARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNIQFL-KSQCPTSLIDIARMRKIPYREAIGSLMYAAVGTRPDISFAVSTLAQFSHNPGWIHWEAVKRVFRYL 1311          
BLAST of mRNA_H-elongata_contig76085.15288.1 vs. uniprot
Match: A0A0A9WI29_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WI29_LYGHE)

HSP 1 Score: 180 bits (457), Expect = 3.390e-50
Identity = 104/346 (30.06%), Postives = 174/346 (50.29%), Query Frame = 1
Query:    1 EPTTMGEAQASSEWPQWKREIAREMDGQTARGVWQVVERPKAKTVLSTRVVFKRKIDNDGRIEKYKCRLVAQGFRQVKGIHYKESSSPTPAQASIRMVLNTIAALGWKVRQLDVGMVYLEADVEEDIYVELPEAYLDSRNQVGLRKKAMYGLVHAGLLWSKQFGIELEAKGFQRSQANPC--------------------------EQAVRDLCSC----FPIKDLGEASYYLGCHIRWDRNAGTLKFDQHQYIQTVVESFGVTKT-SIVPSAAGGKALSKSDSPQTDAEVEEMR*ITYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 945
            EP T  +A    E   WK  +  E+       VW+  E P  KT + ++ VFK K   DG +E+YK RLVAQGF Q  G+ Y+E+ SP  +  +IR++        W + Q+DV   YL  +++E+IY++ P+    +  +V    +++YGL  +G  W ++   +L   G  + ++ PC                          E+ + ++       F +KDLGE +Y LG  ++  +   +L+ +Q +YI+ ++  F ++   S+         + K   P++D E +EM  + YR +VG LM  +  TRPD+ FA  +L +F+ NPG  HW AA++ L+YL
Sbjct:   25 EPKTFKQAMEGPESDLWKAAMEEELTSLEVMKVWEFTELPPGKTAIGSKWVFKIKYMADGTVERYKARLVAQGFTQKPGVDYEETYSPVISLPAIRLLFKLAVNNNWIIHQMDVKTAYLNGELKEEIYMKCPDGITGAEGKVCRLLRSLYGLKQSGRSWYEKLDEKLLEGGMNKCKSEPCIYYRRCNENVKIILVYVDDLILISSSEECMVEMKEMLRRNFDMKDLGELNYILGIEVK--KGDHSLRLNQVKYIKEILSEFNMSDCKSVSTPMETNYNIGKQHCPKSDEERKEMEKVPYRRLVGKLMYLSQATRPDLGFAVSKLGQFSSNPGKVHWMAAKRELRYL 368          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76085.15288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R6PCF8_9APHY3.090e-5736.21Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A401H6Z2_9APHY5.430e-5735.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3JRZ2_9STRA9.870e-5536.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GQU1_9APHY1.070e-5435.69Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A060SPD4_PYCCI1.210e-5335.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A1M2V3W8_TRAPU6.680e-5335.26Retrovirus-related Pol polyprotein from transposon... [more]
E2LZP6_MONPE1.610e-5235.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4CLK4_9STRA3.470e-5235.40Retrovirus-related Pol polyprotein from transposon... [more]
A0A4S4K4Q2_9APHY6.770e-5236.49Uncharacterized protein n=2 Tax=Hermanssonia centr... [more]
A0A0A9WI29_LYGHE3.390e-5030.06Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76085contigH-elongata_contig76085:809..1846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size945
Cds size783
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76085.15288.1prot_H-elongata_contig76085.15288.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76085 959..1834 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.8169312-UTR-H-elongata_contig76085:808..9581622931165.8169312-UTR-H-elongata_contig76085:808..958Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76085 809..958 -
1691679725.2407243-UTR-H-elongata_contig76085:808..9581691679725.2407243-UTR-H-elongata_contig76085:808..958Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76085 809..958 -
1622931165.8747568-UTR-H-elongata_contig76085:1834..18461622931165.8747568-UTR-H-elongata_contig76085:1834..1846Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76085 1835..1846 -
1691679725.2785637-UTR-H-elongata_contig76085:1834..18461691679725.2785637-UTR-H-elongata_contig76085:1834..1846Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76085 1835..1846 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.8362575-CDS-H-elongata_contig76085:958..12131622931165.8362575-CDS-H-elongata_contig76085:958..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76085 959..1213 -
1691679725.2520812-CDS-H-elongata_contig76085:958..12131691679725.2520812-CDS-H-elongata_contig76085:958..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76085 959..1213 -
1622931165.8554776-CDS-H-elongata_contig76085:1306..18341622931165.8554776-CDS-H-elongata_contig76085:1306..1834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76085 1307..1834 -
1691679725.2700984-CDS-H-elongata_contig76085:1306..18341691679725.2700984-CDS-H-elongata_contig76085:1306..1834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76085 1307..1834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76085.15288.1

>prot_H-elongata_contig76085.15288.1 ID=prot_H-elongata_contig76085.15288.1|Name=mRNA_H-elongata_contig76085.15288.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
MGEAQASSEWPQWKREIAREMDGQTARGVWQVVERPKAKTVLSTRVVFKR
KIDNDGRIEKYKCRLVAQGFRQVKGIHYKESSSPTPAQASIRMVLNTIAA
LGWKVRQLDVGMVYLEADVEEDIYVELPEAYLDSRNQVGLRKKAMYGLVH
AGLLWSKQFGIELEAKGFQRSQANPCEQAVRDLCSCFPIKDLGEASYYLG
CHIRWDRNAGTLKFDQHQYIQTVVESFGVTKTSIVPSAAGGKALSKSDSP
QTDAEVEEMR*
back to top

mRNA from alignment at H-elongata_contig76085:809..1846-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76085.15288.1 ID=mRNA_H-elongata_contig76085.15288.1|Name=mRNA_H-elongata_contig76085.15288.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1038bp|location=Sequence derived from alignment at H-elongata_contig76085:809..1846- (Himanthalia elongata Himel1 dioecious)
GAGCCGACAACCATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCGCAGTG GAAAAGGGAGATCGCGCGCGAGATGGATGGGCAAACTGCTCGAGGCGTGT GGCAGGTGGTGGAGCGCCCAAAAGCGAAGACGGTGTTGAGTACGAGAGTT GTTTTCAAGCGCAAAATCGACAACGATGGAAGGATCGAGAAGTATAAATG TCGTCTCGTGGCGCAGGGTTTCAGACAGGTCAAAGGCATACACTACAAGG AATCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGAATGGTACTCAAC ACGATCGCGGCTCTCGGCTGGAAGGTGCGGCAGCTGGACGTCGGCATGGT CTACCTGGAGGCCGATGTGGAGGAGGATATCTACGTTGAGCTCCCAGAGG CATACCTTGACTCCAGGAACCAAGTCGGCCTACGAAAAAAGGCAATGTAC GGACTCGTCCACGCCGGGCTGTTGTGGTCAAAACAGTTCGGGATCGAGCT CGAGGCGAAGGGTTTCCAGAGATCTCAAGCCAACCCATGCGTGTTCTGGC AGATTCTCCACGGGATAGTGGTAGTCGTCATCGTGATCTACGTCGACGAT CTACTGGTTGCTAGTGTGACGAAACGTGACGAGGAGCAAGCGGTGAGGGA CCTGTGCTCCTGTTTCCCCATCAAGGATCTGGGGGAGGCTTCATATTACC TGGGATGCCACATTAGGTGGGACCGGAACGCCGGCACACTGAAGTTCGAC CAGCATCAGTACATACAGACTGTGGTGGAAAGTTTTGGCGTGACGAAGAC CAGCATCGTCCCGTCTGCGGCAGGAGGAAAAGCCCTTTCGAAATCAGACA GCCCGCAAACGGACGCCGAGGTTGAAGAAATGCGCTAGATTACCTACCGA GAAATCGTTGGGGCCCTAATGTGAGCAGCGACGATGACCAGGCCCGACAT TTCATTCGCTGCGCACCAACTGGCAAAATTCAACGACAACCCGGGACCGA CACACTGGAGAGCAGCCCAGAAAGCGCTGCAATACTTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig76085:809..1846-

>mRNA_H-elongata_contig76085.15288.1 ID=mRNA_H-elongata_contig76085.15288.1|Name=mRNA_H-elongata_contig76085.15288.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig76085:809..1846- (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCGCAGTGGAAAAGGGAGAT
CGCGCGCGAGATGGATGGGCAAACTGCTCGAGGCGTGTGGCAGGTGGTGG
AGCGCCCAAAAGCGAAGACGGTGTTGAGTACGAGAGTTGTTTTCAAGCGC
AAAATCGACAACGATGGAAGGATCGAGAAGTATAAATGTCGTCTCGTGGC
GCAGGGTTTCAGACAGGTCAAAGGCATACACTACAAGGAATCCTCCTCTC
CGACTCCTGCGCAGGCCAGCATTAGAATGGTACTCAACACGATCGCGGCT
CTCGGCTGGAAGGTGCGGCAGCTGGACGTCGGCATGGTCTACCTGGAGGC
CGATGTGGAGGAGGATATCTACGTTGAGCTCCCAGAGGCATACCTTGACT
CCAGGAACCAAGTCGGCCTACGAAAAAAGGCAATGTACGGACTCGTCCAC
GCCGGGCTGTTGTGGTCAAAACAGTTCGGGATCGAGCTCGAGGCGAAGGG
TTTCCAGAGATCTCAAGCCAACCCATGCATGGGCGAGGCGCAAGCGTCGT
CGGAGTGGCCGCAGTGGAAAAGGGAGATCGCGCGCGAGATGGATGGGCAA
ACTGCTCGAGGCGTGTGGCAGGTGGTGGAGCGCCCAAAAGCGAAGACGGT
GTTGAGTACGAGAGTTGTTTTCAAGCGCAAAATCGACAACGATGGAAGGA
TCGAGAAGTATAAATGTCGTCTCGTGGCGCAGGGTTTCAGACAGGTCAAA
GGCATACACTACAAGGAATCCTCCTCTCCGACTCCTGCGCAGGCCAGCAT
TAGAATGGTACTCAACACGATCGCGGCTCTCGGCTGGAAGGTGCGGCAGC
TGGACGTCGGCATGGTCTACCTGGAGGCCGATGTGGAGGAGGATATCTAC
GTTGAGCTCCCAGAGGCATACCTTGACTCCAGGAACCAAGTCGGCCTACG
AAAAAAGGCAATGTACGGACTCGTCCACGCCGGGCTGTTGTGGTCAAAAC
AGTTCGGGATCGAGCTCGAGGCGAAGGGTTTCCAGAGATCTCAAGCCAAC
CCATGCGAGCAAGCGGTGAGGGACCTGTGCTCCTGTTTCCCCATCAAGGA
TCTGGGGGAGGCTTCATATTACCTGGGATGCCACATTAGGTGGGACCGGA
ACGCCGGCACACTGAAGTTCGACCAGCATCAGTACATACAGACTGTGGTG
GAAAGTTTTGGCGTGACGAAGACCAGCATCGTCCCGTCTGCGGCAGGAGG
AAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGGACGCCGAGGTTGAAG
AAATGCGCTAGGAGCAAGCGGTGAGGGACCTGTGCTCCTGTTTCCCCATC
AAGGATCTGGGGGAGGCTTCATATTACCTGGGATGCCACATTAGGTGGGA
CCGGAACGCCGGCACACTGAAGTTCGACCAGCATCAGTACATACAGACTG
TGGTGGAAAGTTTTGGCGTGACGAAGACCAGCATCGTCCCGTCTGCGGCA
GGAGGAAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGGACGCCGAGGT
TGAAGAAATGCGCTAG
back to top