mRNA_H-elongata_contig7608.15287.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7608.15287.1
Unique NamemRNA_H-elongata_contig7608.15287.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7608.15287.1 vs. uniprot
Match: F0YDV4_AURAN (Ribosomal protein L39 (Fragment) n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YDV4_AURAN)

HSP 1 Score: 95.9 bits (237), Expect = 3.620e-25
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKMKQNRPIPHWIRQRTDNKIRYNAKRHHWRRTKLGL 153
            QPSHKTFRTK TL KKMKQNRPIP WIR RTDNKIR+NAKR HWRRTKLGL
Sbjct:    1 QPSHKTFRTKRTLAKKMKQNRPIPQWIRMRTDNKIRWNAKRRHWRRTKLGL 51
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BLAST of mRNA_H-elongata_contig7608.15287.1 vs. uniprot
Match: A0A199VEH0_ANACO (60S ribosomal protein L39 n=45 Tax=cellular organisms TaxID=131567 RepID=A0A199VEH0_ANACO)

HSP 1 Score: 91.3 bits (225), Expect = 2.460e-23
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPHWIRQRTDNKIRYNAKRHHWRRTKLGL 153
            PSHKTFR K+ L KKM+QNRPIPHWIR RTDN IRYNAKR HWRRTKLG 
Sbjct:    2 PSHKTFRIKMKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
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BLAST of mRNA_H-elongata_contig7608.15287.1 vs. uniprot
Match: A0A218W104_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218W104_PUNGR)

HSP 1 Score: 91.7 bits (226), Expect = 4.210e-23
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKMKQNRPIPHWIRQRTDNKIRYNAKRHHWRRTKLGL 153
            QPSHKTFR K  L KKM+QNRPIPHWIR RTDN IRYNAKR HWRRTKLG 
Sbjct:   35 QPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 85
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BLAST of mRNA_H-elongata_contig7608.15287.1 vs. uniprot
Match: A0A2I0K803_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0K803_PUNGR)

HSP 1 Score: 91.7 bits (226), Expect = 4.450e-23
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKMKQNRPIPHWIRQRTDNKIRYNAKRHHWRRTKLGL 153
            QPSHKTFR K  L KKM+QNRPIPHWIR RTDN IRYNAKR HWRRTKLG 
Sbjct:   37 QPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 87
[Close]
BLAST of mRNA_H-elongata_contig7608.15287.1 vs. uniprot
Match: A0A7J7Q6B9_9CHLO (60S ribosomal protein L39 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q6B9_9CHLO)

HSP 1 Score: 90.5 bits (223), Expect = 4.970e-23
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPHWIRQRTDNKIRYNAKRHHWRRTKLGL 153
            PS KTFRTKV L KK KQNRPIPHWIR RT+NKIRYNAKR HWRRTKLG+
Sbjct:    2 PSQKTFRTKVKLAKKAKQNRPIPHWIRFRTNNKIRYNAKRRHWRRTKLGI 51
[Close]
BLAST of mRNA_H-elongata_contig7608.15287.1 vs. uniprot
Match: A9PC42_POPTR (Uncharacterized protein n=17 Tax=Mesangiospermae TaxID=1437183 RepID=A9PC42_POPTR)

HSP 1 Score: 90.1 bits (222), Expect = 7.070e-23
Identity = 41/50 (82.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPHWIRQRTDNKIRYNAKRHHWRRTKLGL 153
            PSHKTFR K  L KKM+QNRPIPHWIR RTDN IRYNAKR HWRRTKLG 
Sbjct:    2 PSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
[Close]
BLAST of mRNA_H-elongata_contig7608.15287.1 vs. uniprot
Match: A0A835YZW6_9STRA (Ribosomal protein L39e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.010e-22
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPHWIRQRTDNKIRYNAKRHHWRRTKLGL 153
            PSHKTFRTK TL  K+KQNRPIP+WIR RTDN IRYNAKR HWRRTKLGL
Sbjct:    2 PSHKTFRTKRTLAVKLKQNRPIPNWIRLRTDNTIRYNAKRRHWRRTKLGL 51
[Close]
BLAST of mRNA_H-elongata_contig7608.15287.1 vs. uniprot
Match: A0A4S8JP59_MUSBA (Uncharacterized protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8JP59_MUSBA)

HSP 1 Score: 90.1 bits (222), Expect = 1.060e-22
Identity = 41/50 (82.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPHWIRQRTDNKIRYNAKRHHWRRTKLGL 153
            PSHKTFR K  L KKM+QNRPIPHWIR RTDN IRYNAKR HWRRTKLG 
Sbjct:   18 PSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 67
[Close]
BLAST of mRNA_H-elongata_contig7608.15287.1 vs. uniprot
Match: A0A822YKQ6_NELNU (Uncharacterized protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822YKQ6_NELNU)

HSP 1 Score: 90.5 bits (223), Expect = 1.170e-22
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKMKQNRPIPHWIRQRTDNKIRYNAKRHHWRRTKLGL 153
            +PSHKTFR K  L KKM+QNRPIPHWIR RTDN IRYNAKR HWRRTKLG 
Sbjct:   34 EPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 84
[Close]
BLAST of mRNA_H-elongata_contig7608.15287.1 vs. uniprot
Match: A0A0A0LYE1_CUCSA (Uncharacterized protein n=9 Tax=fabids TaxID=91835 RepID=A0A0A0LYE1_CUCSA)

HSP 1 Score: 89.4 bits (220), Expect = 1.430e-22
Identity = 41/50 (82.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPHWIRQRTDNKIRYNAKRHHWRRTKLGL 153
            PSHKTFR K  L KKM+QNRPIPHWIR RTDN IRYNAKR HWRRTKLG 
Sbjct:    2 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7608.15287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0YDV4_AURAN3.620e-2588.24Ribosomal protein L39 (Fragment) n=2 Tax=Pelagomon... [more]
A0A199VEH0_ANACO2.460e-2382.0060S ribosomal protein L39 n=45 Tax=cellular organi... [more]
A0A218W104_PUNGR4.210e-2382.35Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]
A0A2I0K803_PUNGR4.450e-2382.35Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]
A0A7J7Q6B9_9CHLO4.970e-2384.0060S ribosomal protein L39 n=1 Tax=Scenedesmus sp. ... [more]
A9PC42_POPTR7.070e-2382.00Uncharacterized protein n=17 Tax=Mesangiospermae T... [more]
A0A835YZW6_9STRA1.010e-2284.00Ribosomal protein L39e n=1 Tax=Tribonema minus Tax... [more]
A0A4S8JP59_MUSBA1.060e-2282.00Uncharacterized protein n=1 Tax=Musa balbisiana Ta... [more]
A0A822YKQ6_NELNU1.170e-2280.39Uncharacterized protein n=1 Tax=Nelumbo nucifera T... [more]
A0A0A0LYE1_CUCSA1.430e-2282.00Uncharacterized protein n=9 Tax=fabids TaxID=91835... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7608contigH-elongata_contig7608:6230..7234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue7e-19
Seed eggNOG ortholog2880.D8LSX1
Preferred nameRPL39
KEGG rclassRC00055,RC00523
KEGG koko:K01886,ko:K02924
KEGG ReactionR03652
KEGG Pathwayko00970,ko01100,ko03010,map00970,map01100,map03010
KEGG ModuleM00177,M00179,M00359,M00360
GOsGO:0000003,GO:0000184,GO:0000956,GO:0002181,GO:0002227,GO:0002251,GO:0002376,GO:0002385,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0019731,GO:0019953,GO:0022414,GO:0022625,GO:0022626,GO:0032501,GO:0032504,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042742,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044421,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045047,GO:0045087,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048232,GO:0048519,GO:0048609,GO:0050789,GO:0050830,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060255,GO:0061844,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0008@1,KOG0002@2759
EC6.1.1.18
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01007,ko03011,ko03016
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRibosomal protein L39e domain
Ec32 orthologEc-26_001730.1
Exons2
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.7350225-CDS-H-elongata_contig7608:6229..62781622931165.7350225-CDS-H-elongata_contig7608:6229..6278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7608 6230..6278 -
1691679725.2154706-CDS-H-elongata_contig7608:6229..62781691679725.2154706-CDS-H-elongata_contig7608:6229..6278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7608 6230..6278 -
1622931165.7503788-CDS-H-elongata_contig7608:7127..72341622931165.7503788-CDS-H-elongata_contig7608:7127..7234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7608 7128..7234 -
1691679725.2266183-CDS-H-elongata_contig7608:7127..72341691679725.2266183-CDS-H-elongata_contig7608:7127..7234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7608 7128..7234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7608.15287.1prot_H-elongata_contig7608.15287.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7608 6230..7234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7608.15287.1

>prot_H-elongata_contig7608.15287.1 ID=prot_H-elongata_contig7608.15287.1|Name=mRNA_H-elongata_contig7608.15287.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
QPSHKTFRTKVTLGKKMKQNRPIPHWIRQRTDNKIRYNAKRHHWRRTKLG
L*
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mRNA from alignment at H-elongata_contig7608:6230..7234-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7608.15287.1 ID=mRNA_H-elongata_contig7608.15287.1|Name=mRNA_H-elongata_contig7608.15287.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1005bp|location=Sequence derived from alignment at H-elongata_contig7608:6230..7234- (Himanthalia elongata Himel1 dioecious)
CAGCCTTCTCACAAGACTTTCCGCACCAAGGTTACCCTGGGCAAAAAAAT
GAAGCAGAACAGGCCCATCCCGCACTGGATCCGCCAACGCACGGATAACA
AGATCCGGTGAGTACGAGAGTGAGAAGGTAGCCCGCACGAAAAACTCAAA
GCCGGGGAGGAGGAGGAGGAAGGCGTGTTCCAGAGCGCTTTGATAAGCTT
GAATTTTCGACTCACAAGCAACAGCGATACCTTGTTGTACGAAAAAACGG
GGTGGAGAGTTAGGTACTCGGTGATAGAGGAGCCGATATCATAGTTCCCC
GAGGGAAAGGGGCTGGAAGCGGGGGAGGGCGCGTTACAAAGCGCATTGAA
CGACAGGAAACTGACTCGCAAGTCGCGCACGTAACACTGCCGTGTGGAAA
AACTTGAAATTTTATTTGTTTTTTTTTAATATATGAAAACATTCAACCCC
CCGAACATCCACACCTTCTTAGCAGCAGCGTGAGAGGTGCAGTGCAATCC
AGGGGACTAACTATCGTCACGTTCAAAATTGTACACCATTACTTTTTGAG
CACTGTTCCATGATCGAGATAATTTTGTGTAGCTGCAGGAGTGACCGGGG
CCGTTTGCGCTCGTAAAGAAAAGTCATGTACACTTGGGCCCGGTCCACGC
GTAACGAACGCAAGAGATAGTTGTTCACACACCGTTGAAAGTGATGGTAT
TATGACGTCATCTGCGGCCGGGTAGGGTAAGGTAGGAATCCGTTTGGATT
TGAAACAATAGTCAGCCTTGCATAATGGACGGCGTGGTTTCGCGATGACG
AAGGGTTCCCACCTTGTAGCTACCGCGAAATTTGTTGTGGCTTTTTACCC
TCGCTGATCCAACCCAGCGTAGCATGATATAAAAGTGACCCGATGCCGCA
ACCGCCCGTTGTCCCATCACCCTCCTCCCCCGTTTGAACCTAACGCCTGC
CTCCAGCTACAACGCCAAGCGCCACCACTGGCGCCGCACCAAGCTCGGTC
TGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig7608:6230..7234-

>mRNA_H-elongata_contig7608.15287.1 ID=mRNA_H-elongata_contig7608.15287.1|Name=mRNA_H-elongata_contig7608.15287.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig7608:6230..7234- (Himanthalia elongata Himel1 dioecious)
CAGCCTTCTCACAAGACTTTCCGCACCAAGGTTACCCTGGGCAAAAAAAT
GAAGCAGAACAGGCCCATCCCGCACTGGATCCGCCAACGCACGGATAACA
AGATCCGCAGCCTTCTCACAAGACTTTCCGCACCAAGGTTACCCTGGGCA
AAAAAATGAAGCAGAACAGGCCCATCCCGCACTGGATCCGCCAACGCACG
GATAACAAGATCCGCTACAACGCCAAGCGCCACCACTGGCGCCGCACCAA
GCTCGGTCTGTAGCTACAACGCCAAGCGCCACCACTGGCGCCGCACCAAG
CTCGGTCTGTAG
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