mRNA_H-elongata_contig7608.15286.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7608.15286.1
Unique NamemRNA_H-elongata_contig7608.15286.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7608.15286.1 vs. uniprot
Match: D8LSX2_ECTSI (Similar to intersectin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX2_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 5.520e-82
Identity = 157/274 (57.30%), Postives = 187/274 (68.25%), Query Frame = 1 
Query:  241 KVTINDGYKYSVLRRYSQFDQLRVRVAPIVRVVTAPFPPKFGVRASTVGLQPADIEDRKVMLRAWLQSLCTAASTGYPALRVPIYDFLETALNYPP-------DPIAVP--NTAAATTADIPYATATPYTETFAEASVAQPPFSE-----VPQAAKLDPIISD---GWAVPVESREASDITFAMTGPDAYGRLEAGKVAEVLRSNTGALPEDLRAIWELSDIDKDGMLDRDEFTLAWYLSKEAAAGRKPPTSLPANLVPASKKALAPRSAANPF 1011
            ++T+NDGYKY VLRRYSQFDQLR RV+ ++R  T PFPPK  +R+STVGL PAD+E+R+ ML+AWLQSLCTAAS   PALRVP+YDFLETA+ YPP       DP A    +TA AT A     T  P    +AEA    PP +      VP A  L P       GWAVP ESR+ASD+  AM GP A G+L   + A  LR+ TGA  EDLRA+W LSDID+DGMLDRDEF +AWYL+ +AAAG KPP SLPA++VP SK+  A  S ANPF
Sbjct:  126 QITMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKSSIRSSTVGLGPADLEERRQMLQAWLQSLCTAASANTPALRVPLYDFLETAMYYPPEAPVTSSDPTAASAQHTAVATPAATTATTGVPVAAAYAEAL---PPAAGTKGVGVPSAGPLPPKPDSTGYGWAVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWALSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPF 396
[Close]
BLAST of mRNA_H-elongata_contig7608.15286.1 vs. uniprot
Match: A0A6H5JHJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ6_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 9.680e-53
Identity = 118/218 (54.13%), Postives = 139/218 (63.76%), Query Frame = 1 
Query:  421 MLRAWLQSLCTAASTGYPALRVPIYDFLETALNYPP-------DPI--AVPNTAAATTADIPYATATPYTETFAEA------------SVAQPPFSEVPQAAKLDPIISDGWAVPVESREASDITFAMTGPDAYGRLEAGKVAEVLRSNTGALPEDLRAIWELSDIDKDGMLDRDEFTLAWYLSKEAAAGRKPPTSLPANLVPASKKALAPRSAANPF 1011
            ML+AWLQSLCTAAST  PALRVP+YDFLETA  YPP       DP   +  +TA AT A     T  P    +AEA            S A PP  + P +A+      DGWAVP ESR+ASD+  AM GP A G+L   + A  LR+ TGA  EDLRA+W LSDID+DGMLDRDEF +AWYL+ +AAAG KPP SLPA++VP SK+  A  S ANPF
Sbjct:    1 MLQAWLQSLCTAASTNTPALRVPLYDFLETASYYPPEAPVTSSDPTTASAQHTAVATPAATTATTGVPVAAAYAEALPPAAGTKGVGVSSAGPPPPK-PDSAE------DGWAVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWALSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPF 211
[Close]
BLAST of mRNA_H-elongata_contig7608.15286.1 vs. uniprot
Match: A0A6H5JJX9_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJX9_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.660e-17
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:  241 KVTINDGYKYSVLRRYSQFDQLRVRVAPIVRVVTAPFPPKFGVRASTVGLQPADIEDRK 417
            +VT+NDGYKY VLRRYSQFDQLR RV+ ++R  T PFPPK  +R+STVGL PAD+E+R+
Sbjct:   60 QVTMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKCSIRSSTVGLGPADLEERR 118
[Close]
BLAST of mRNA_H-elongata_contig7608.15286.1 vs. uniprot
Match: A0A6B2L2G6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L2G6_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 2.970e-14
Identity = 54/118 (45.76%), Postives = 70/118 (59.32%), Query Frame = 1 
Query:  631 QPPFSEVPQAAKLDPIISDGWAVPVESREASDITFAMTGPDAYGRLEAGKVAEVLRSNTGALPEDLRAIWELSDIDKDGMLDRDEFTLAWYLSKEAAAGRKPPTSLPANLVPASKKAL 984
            QPP SE P++   +P    GW V  +++ A D  F   GP   G++ +G VA     NTG     LR IWELSD +KDG LD +EF LA +L++E   GRK P  LPA+LVP SK+ L
Sbjct:  375 QPPKSEDPKS--TNPFADSGWDVKADAKAAYDQIFHSLGPK-NGKI-SGNVARETLVNTGIETTLLRKIWELSDFEKDGQLDAEEFALALHLTEEVKMGRKVPDVLPASLVPPSKRKL 488
[Close]
BLAST of mRNA_H-elongata_contig7608.15286.1 vs. uniprot
Match: A0A7S2F4E5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F4E5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.950e-13
Identity = 53/129 (41.09%), Postives = 72/129 (55.81%), Query Frame = 1 
Query:  631 QPPFSEVPQAAKLDPI--ISDGWAVPVESREASDITFAMTGPDAYGRLEAGKVAEVLRSNTGALPEDLRAIWELSDIDKDGMLDRDEFTLAWYLSKEAAAGRKPPTSLPANLVPASKKALAPRSAANPF 1011
            Q P ++ P A+  +P    ++ WAV     E + + F   GP   G+L   +V E L + TG     LR IWELSDIDKDG LD DEF +A YL ++A  G+  P +LP+ +VP SKK+       NPF
Sbjct:  110 QYPVAKTPVASAANPFGASTEEWAVAPYQAEFNQV-FYSKGPS-NGKLSPAQVREALMA-TGVAQGVLRCIWELSDIDKDGQLDMDEFAVAMYLCRQAQRGQPMPQALPSQVVPPSKKSYI---VGNPF 232
[Close]
BLAST of mRNA_H-elongata_contig7608.15286.1 vs. uniprot
Match: UPI001884DCC1 (epidermal growth factor receptor substrate 15-like 1 n=2 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884DCC1)

HSP 1 Score: 82.0 bits (201), Expect = 2.800e-12
Identity = 56/123 (45.53%), Postives = 70/123 (56.91%), Query Frame = 1 
Query:  622 SVAQPPFSEVPQAAKLDPIISDG---WAVPVESREASDITFAMTGPDAYGRLEAGKVAEVLRSNTGALPED-LRAIWELSDIDKDGMLDRDEFTLAWYLSKEAAAGRKPPTSLPANLVPASKK 978
            +V  P   E P A    P IS+G   W V  E ++  D  F   GP    RL   KV EVL ++   LP D L  IW+LSDIDKDG LDRDEFT+A +L  +A A    P +LPA L+PA+K+
Sbjct:   92 NVPPPNMGEPPPAGSFSPAISNGSTVWTVKPEDKQRYDQIFNSLGP-INERLPGNKVREVLLNSK--LPMDTLGRIWDLSDIDKDGFLDRDEFTIAMHLVYKALAKCAVPAALPAELLPAAKR 211
[Close]
BLAST of mRNA_H-elongata_contig7608.15286.1 vs. uniprot
Match: A0A7S2V7Y5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7Y5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.790e-11
Identity = 48/125 (38.40%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:  619 ASVAQPPFSEVPQAAKLDPIISDGWAVPVESREASDITFAMTGPDAYGRLEAGKVAEVLRSNTGALPEDLRA-IWELSDIDKDGMLDRDEFTLAWYLSKEAAAGRKPPTSLPANLVPASKKALAP 990
            AS A P  S VP A   +      W V     +   +  AM      G+L A +  E L  +   LP ++   +WELSD+DKDGMLD+DEF +A YL ++A+ G   P  LP ++ PASK +L P
Sbjct:   37 ASAANPFASAVPIAPSYE------WEVAPFKADYDSVFDAMNPAGPQGQLLATQAREALLQSK--LPNEVLVNVWELSDLDKDGMLDKDEFAVAMYLCRQASCGNPVPAQLPRSMCPASKLSLLP 153
[Close]
BLAST of mRNA_H-elongata_contig7608.15286.1 vs. uniprot
Match: A0A7S4B9K4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B9K4_CHRCT)

HSP 1 Score: 75.9 bits (185), Expect = 1.670e-10
Identity = 48/120 (40.00%), Postives = 64/120 (53.33%), Query Frame = 1 
Query:  628 AQP-PFSEVPQAAKLDPIISDGWAVPVESREASDITFAMTGPDAYGRLEAGKVAEVLRSNTGALPEDLRAIWELSDIDKDGMLDRDEFTLAWYLSKEAAAGRKPPTSLPANLVPASKKAL 984
            AQP P+   P AA   P     WA+    +   D  FA   P   G L +G     +   +G   + LR +W  SDID+DG LDRDEF +A +L++E AAGR  P SLP ++ P SK+ L
Sbjct:  441 AQPSPYVAAPAAAPTAP----AWAISPADKTKYDEVFATMQPQ--GGLASGLAVRPILERSGLPVDVLRQVWNFSDIDRDGNLDRDEFAVAMHLTRECAAGRPLPPSLPIDMYPPSKRHL 554
[Close]
BLAST of mRNA_H-elongata_contig7608.15286.1 vs. uniprot
Match: A0A8C7NIW8_ONCMY (Epidermal growth factor receptor pathway substrate 15 n=3 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A8C7NIW8_ONCMY)

HSP 1 Score: 75.9 bits (185), Expect = 2.050e-10
Identity = 56/137 (40.88%), Postives = 68/137 (49.64%), Query Frame = 1 
Query:  622 SVAQPPFSEVPQAAKLDPIISDG-WAVPVESREASDITFAMTGPDAYGRLEAGKVAEVLRSNTGALPED-LRAIWELSDIDKDGMLDRDEFTLAWYLSKEAAAGRKPPTSLPANLVPASKKALAPRSAANPF*RIPS 1026
            +V+ P F +      L  +  D  W V  E +   D  F    P   G L   KV  VL ++   LP D L  +WELSD+D+DGMLDRDEF +A YL   A  G   P SLPA LVP SK+   P S       IPS
Sbjct:   97 AVSLPKFQDTSSPLLLGGVSIDSPWVVTTEEKLKFDAVFVSLSP-VSGMLSGEKVKPVLLNSK--LPVDVLGRVWELSDLDRDGMLDRDEFAVAMYLVYRALEGEPVPMSLPAPLVPPSKRKKPPVSVPPVMPLIPS 230
[Close]
BLAST of mRNA_H-elongata_contig7608.15286.1 vs. uniprot
Match: A0A851DMA0_TODME (EPS15 factor (Fragment) n=1 Tax=Todus mexicanus TaxID=135184 RepID=A0A851DMA0_TODME)

HSP 1 Score: 70.1 bits (170), Expect = 2.140e-10
Identity = 52/114 (45.61%), Postives = 61/114 (53.51%), Query Frame = 1 
Query:  691 WAVPVESREASDITFAMTGPDAYGRLEAGKVAEVLRSNTGALPED-LRAIWELSDIDKDGMLDRDEFTLAWYLSKEAAAGRKPPTSLPANLVPASKKALAPRSAANPF*RIPSS 1029
            WAV +E +   D  F    P   G L   KV  VL ++   LP D L  +WELSDID+DGMLDRDEF +A +L   A      P SLPA LVP SK+       A P   IPSS
Sbjct:   19 WAVKLEDKAKYDAIFDSLNP-VNGLLSGDKVKPVLLNSK--LPVDILGRVWELSDIDRDGMLDRDEFAVAMFLVYCALEKEPVPMSLPAALVPPSKRKPITIPGAMPL--IPSS 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7608.15286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSX2_ECTSI5.520e-8257.30Similar to intersectin 2 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JHJ6_9PHAE9.680e-5354.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJX9_9PHAE1.660e-1767.80PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A6B2L2G6_9EUKA2.970e-1445.76Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A7S2F4E5_9STRA7.950e-1341.09Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI001884DCC12.800e-1245.53epidermal growth factor receptor substrate 15-like... [more]
A0A7S2V7Y5_9STRA4.790e-1138.40Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4B9K4_CHRCT1.670e-1040.00Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A8C7NIW8_ONCMY2.050e-1040.88Epidermal growth factor receptor pathway substrate... [more]
A0A851DMA0_TODME2.140e-1045.61EPS15 factor (Fragment) n=1 Tax=Todus mexicanus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7608contigH-elongata_contig7608:663..3809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.0
Seed ortholog evalue4.1e-74
Seed eggNOG ortholog2880.D8LSX2
KEGG koko:K12472
KEGG Pathwayko04144,map04144
EggNOG free text desc.endocytosis
EggNOG OGsKOG0998@1,KOG0998@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-26_001740.1
Exons3
Model size2499
Cds size927
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7608.15286.1prot_H-elongata_contig7608.15286.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7608 750..2324 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.6127303-UTR-H-elongata_contig7608:662..7491622931165.6127303-UTR-H-elongata_contig7608:662..749Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7608 663..749 +
1691679725.1515942-UTR-H-elongata_contig7608:662..7491691679725.1515942-UTR-H-elongata_contig7608:662..749Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7608 663..749 +
1622931165.6859858-UTR-H-elongata_contig7608:2324..38091622931165.6859858-UTR-H-elongata_contig7608:2324..3809Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7608 2325..3809 +
1691679725.204232-UTR-H-elongata_contig7608:2324..38091691679725.204232-UTR-H-elongata_contig7608:2324..3809Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7608 2325..3809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.6306968-CDS-H-elongata_contig7608:749..10781622931165.6306968-CDS-H-elongata_contig7608:749..1078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7608 750..1078 +
1691679725.1627183-CDS-H-elongata_contig7608:749..10781691679725.1627183-CDS-H-elongata_contig7608:749..1078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7608 750..1078 +
1622931165.646857-CDS-H-elongata_contig7608:1395..18641622931165.646857-CDS-H-elongata_contig7608:1395..1864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7608 1396..1864 +
1691679725.1810265-CDS-H-elongata_contig7608:1395..18641691679725.1810265-CDS-H-elongata_contig7608:1395..1864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7608 1396..1864 +
1622931165.6651518-CDS-H-elongata_contig7608:2195..23241622931165.6651518-CDS-H-elongata_contig7608:2195..2324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7608 2196..2324 +
1691679725.1937482-CDS-H-elongata_contig7608:2195..23241691679725.1937482-CDS-H-elongata_contig7608:2195..2324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7608 2196..2324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7608.15286.1

>prot_H-elongata_contig7608.15286.1 ID=prot_H-elongata_contig7608.15286.1|Name=mRNA_H-elongata_contig7608.15286.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=309bp
MLVVRLTIPARLPVCPPARPPSHLSITHASTILLEQCSALMAPSPRFFTQ
PKVTINDGYKYSVLRRYSQFDQLRVRVAPIVRVVTAPFPPKFGVRASTVG
LQPADIEDRKVMLRAWLQSLCTAASTGYPALRVPIYDFLETALNYPPDPI
AVPNTAAATTADIPYATATPYTETFAEASVAQPPFSEVPQAAKLDPIISD
GWAVPVESREASDITFAMTGPDAYGRLEAGKVAEVLRSNTGALPEDLRAI
WELSDIDKDGMLDRDEFTLAWYLSKEAAAGRKPPTSLPANLVPASKKALA
PRSAANPF*
back to top

mRNA from alignment at H-elongata_contig7608:663..3809+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7608.15286.1 ID=mRNA_H-elongata_contig7608.15286.1|Name=mRNA_H-elongata_contig7608.15286.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3147bp|location=Sequence derived from alignment at H-elongata_contig7608:663..3809+ (Himanthalia elongata Himel1 dioecious)
TTTGAAACGATCACATTAGTATTATTTCTCAATGTCGCAAAATATTAATT
TTCGTCATCGGGCGTAAAAAAAAAAAAAGTTTTCGGAATGCTGGTCGTTC
GGTTGACGATTCCGGCACGCCTGCCTGTCTGCCCGCCCGCCCGCCCGCCG
TCTCACCTTTCCATCACCCATGCATCTACTATTTTGCTTGAGCAATGTTC
TGCGCTCATGGCTCCCTCGCCTCGATTTTTTACCCAACCAAAGGTTACCA
TCAACGATGGTTACAAGTATTCCGTGCTTAGGCGATACTCTCAGTTCGAC
CAGCTCAGAGTGCGCGTGGCGCCGATTGTACGCGTCGTGACCGCGCCCTT
CCCGCCTAAGTTCGGCGTTCGAGCCTCCACCGTGGGACTGCAGCCGGCAG
ACATCGAGGATCGCAAGTGGGTGGACTGTAAAATATATGGGTGGATTGCG
CTCTAAACACAGGCGGCGCGCGAGTTGCTTATGACCGTCACTGTCGATTC
ACCAACCCCAGCGGGATAAAGCCGGGTTATTCGGATCGGGGAAACCTGGC
GAATATGCTCCCCTCGAGGAGAGGGAGGCCAAAATATCGGTTGGATGTTT
TCTCTTGCGCGTCTTGAAGTTGTCTGCCGTCCTCATCCCCCCCCTCCCCC
CATCCCTAACCGTGAGATCAGCGCCTTGACCGCCGTTACCCTGACTGTCT
GCTTTCCTTCGCCCTCTCCGCCAATCTCCCCAGGGTCATGCTGCGGGCTT
GGCTTCAATCACTCTGCACCGCGGCGTCAACCGGCTACCCGGCTCTCCGC
GTTCCCATATACGACTTCCTCGAGACCGCCCTCAACTACCCTCCCGATCC
GATTGCCGTCCCCAACACGGCCGCCGCTACCACCGCCGACATACCTTACG
CCACGGCAACTCCGTACACCGAAACCTTCGCCGAAGCGTCAGTAGCCCAG
CCGCCATTCTCTGAGGTTCCGCAGGCTGCAAAGCTCGACCCGATTATAAG
CGACGGCTGGGCGGTACCCGTTGAATCGCGGGAGGCATCCGACATAACGT
TTGCCATGACGGGGCCCGATGCCTACGGAAGGCTGGAGGCCGGAAAGGTG
GCCGAAGTCCTAAGGTCCAACACCGGAGCCCTGCCAGAAGACCTGCGCGC
AATCTGGGAGCTCTCGGACATCGACAAGGATGGAATGCTCGATAGAGACG
AGGTAAGACTGTCTAGAGGTCGACTCGGGCGAGGTAGAGAGTGGGGCTGA
TTCAGGTTGTCAAGTCGCGTACCTGGTGAGAGTTTTAGAAAAGAGGGAGG
AGGAGGAGGAAGAAAGCGAACACTGGAGTCACAATTTGGGCCGCCTTCTC
CGGATCAACTCAGCAAATTCGCCTCGACAGGACGCTGTCTTGTGAGGGGT
TACGATCGCTCGCGTATTATCCCCAAAAGGCCATTTTGCTCTCCTCCCCC
CCACGTTCAAATCACTTTGTAGTAGTACGGTTTGACTTGACCCAGCTCAA
AATCACACGATATCCTTGCTGTGTTTTTGACAGTTCACTCTGGCTTGGTA
TCTGTCCAAGGAGGCGGCGGCGGGGCGAAAGCCTCCCACATCGCTCCCGG
CCAACCTGGTGCCGGCGTCGAAGAAAGCCCTCGCGCCCCGAAGTGCTGCA
AACCCATTCTAAAGGATCCCAAGCAGCGAAGCGCATTTTCGTTCATCGGG
CATGTAGCTTTTGATAACCTCTCGTAAGGGATTGAAGGTGCCCCTTTCAG
GTGGTTTACCTTCATCGTCGGGGGTATAGCAATAGTTGGCTTTCGATTTC
TCTAATATACTGGATTCTGAGTTTGTAGTGAAATTCAGGGCTCTACACGG
TAGCGATTCTTGTCACGGTAGCATTTGGTATAGTAGGGAATTGACGTGGT
AACTACATGGTTCACGGGTACGGTAACTAGATTCAACGGTATTGACGGTA
CGGTAATTAGGTTTACGGTAAAACTCGGGGAGTTCCATACTTTGATCATT
CGTGATTTTGTCGGGGTGACACAGATTCAGCCTGGGTTGGAAGAATGAGC
AGGCTGACGCGGGACGGGACAGGGAAAAATATTTTTCGTTCAGCTGACCA
CGAGCAGAAAGCAACCAAATCCGGTTGATCTGCTAAATGTGTGACCCAAC
AACATCAACAGTATGTTGTTACACAGACCTCGTTTATGATTGTAATGCGA
GCACCTTGAAATGTAGCTTTTCAGCTGAAAAGTTGGCGGTGAGGAAACGG
TACGGTAGCGGTAAGGAAGAATCAGCACAGTAAAAAAATCGGTACGGTAG
AAAAACAGCGATTTTCTTCGGAATTGCACGGTAAGTAACGGTATACGCTA
AACGGTAGCCTGAGGACGCGGATATTCGCGGTAAATTTATCGTAAAGAGC
CCTGGTGAATTCGATTGTTTTCAAAGATGAGGTTAATTCGTTCGTCTGTT
GAGGCCACGAACCGAGGTTCAAGCCACAATTGAATGTTGACGGGTGAGCA
GGGCGGCCATTTGACGTCATCTTGAATACATTGATTCTGGAAACGGCGAG
AAAGTTGTGTTGTGATCGACGTCAGTTTTTTTTACGTTTATGTTTATCTC
TTACCATATGTTGCTTTCGTCCAGCCGTGAGGTTTTTTTTTGCAAAATAG
TTTCGTTAAGCTAATGAGTACGTCTGGTAGGAGTGATAATTGTGACTACA
TAGTCACAATTTAGTTTGTTACTACGCGCGAAAATTGAAAAAAACGTTGA
TTTCATTCAGAGTAAAATAGCCGTTTCTCTGAAGCCAATTATATACTGGC
TGGAAAAACCCGCCCCGAACACCCATGGAGTGCTTTTTGCAACTCTGAGA
ACCTTAATTTGATGGTGGAAACCCGGGGGTGGTCCTTCTATGTCCCCATA
GCCACAAACTAAATTGTGAACATGTACCCACAATTATCAATTTACAAAAC
CCCACCGATAGGCGTGGGCATCAGCGGGAATCTTATTACTATATACCAAC
TACAGCATGGTAATGGACGTTTTCCAGAGACGTAACAATCTTTTCGAAAC
GGGTAAAACTTGCTTGGTCGACAGTCTTACGAGGGACGTAACACAGGCGA
AGGCATTTCTGTAGCTGAAAAACACGTGTATTTAATCTTGGAACGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7608:663..3809+

>mRNA_H-elongata_contig7608.15286.1 ID=mRNA_H-elongata_contig7608.15286.1|Name=mRNA_H-elongata_contig7608.15286.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1854bp|location=Sequence derived from alignment at H-elongata_contig7608:663..3809+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGTCGTTCGGTTGACGATTCCGGCACGCCTGCCTGTCTGCCCGCC
CGCCCGCCCGCCGTCTCACCTTTCCATCACCCATGCATCTACTATTTTGC
TTGAGCAATGTTCTGCGCTCATGGCTCCCTCGCCTCGATTTTTTACCCAA
CCAAAGGTTACCATCAACGATGGTTACAAGTATTCCGTGCTTAGGCGATA
CTCTCAGTTCGACCAGCTCAGAGTGCGCGTGGCGCCGATTGTACGCGTCG
TGACCGCGCCCTTCCCGCCTAAGTTCGGCGTTCGAGCCTCCACCGTGGGA
CTGCAGCCGGCAGACATCGAGGATCGCAAATGCTGGTCGTTCGGTTGACG
ATTCCGGCACGCCTGCCTGTCTGCCCGCCCGCCCGCCCGCCGTCTCACCT
TTCCATCACCCATGCATCTACTATTTTGCTTGAGCAATGTTCTGCGCTCA
TGGCTCCCTCGCCTCGATTTTTTACCCAACCAAAGGTTACCATCAACGAT
GGTTACAAGTATTCCGTGCTTAGGCGATACTCTCAGTTCGACCAGCTCAG
AGTGCGCGTGGCGCCGATTGTACGCGTCGTGACCGCGCCCTTCCCGCCTA
AGTTCGGCGTTCGAGCCTCCACCGTGGGACTGCAGCCGGCAGACATCGAG
GATCGCAAGGTCATGCTGCGGGCTTGGCTTCAATCACTCTGCACCGCGGC
GTCAACCGGCTACCCGGCTCTCCGCGTTCCCATATACGACTTCCTCGAGA
CCGCCCTCAACTACCCTCCCGATCCGATTGCCGTCCCCAACACGGCCGCC
GCTACCACCGCCGACATACCTTACGCCACGGCAACTCCGTACACCGAAAC
CTTCGCCGAAGCGTCAGTAGCCCAGCCGCCATTCTCTGAGGTTCCGCAGG
CTGCAAAGCTCGACCCGATTATAAGCGACGGCTGGGCGGTACCCGTTGAA
TCGCGGGAGGCATCCGACATAACGTTTGCCATGACGGGGCCCGATGCCTA
CGGAAGGCTGGAGGCCGGAAAGGTGGCCGAAGTCCTAAGGTCCAACACCG
GAGCCCTGCCAGAAGACCTGCGCGCAATCTGGGAGCTCTCGGACATCGAC
AAGGATGGAATGCTCGATAGAGACGAGGGTCATGCTGCGGGCTTGGCTTC
AATCACTCTGCACCGCGGCGTCAACCGGCTACCCGGCTCTCCGCGTTCCC
ATATACGACTTCCTCGAGACCGCCCTCAACTACCCTCCCGATCCGATTGC
CGTCCCCAACACGGCCGCCGCTACCACCGCCGACATACCTTACGCCACGG
CAACTCCGTACACCGAAACCTTCGCCGAAGCGTCAGTAGCCCAGCCGCCA
TTCTCTGAGGTTCCGCAGGCTGCAAAGCTCGACCCGATTATAAGCGACGG
CTGGGCGGTACCCGTTGAATCGCGGGAGGCATCCGACATAACGTTTGCCA
TGACGGGGCCCGATGCCTACGGAAGGCTGGAGGCCGGAAAGGTGGCCGAA
GTCCTAAGGTCCAACACCGGAGCCCTGCCAGAAGACCTGCGCGCAATCTG
GGAGCTCTCGGACATCGACAAGGATGGAATGCTCGATAGAGACGAGTTCA
CTCTGGCTTGGTATCTGTCCAAGGAGGCGGCGGCGGGGCGAAAGCCTCCC
ACATCGCTCCCGGCCAACCTGGTGCCGGCGTCGAAGAAAGCCCTCGCGCC
CCGAAGTGCTGCAAACCCATTCTAATTCACTCTGGCTTGGTATCTGTCCA
AGGAGGCGGCGGCGGGGCGAAAGCCTCCCACATCGCTCCCGGCCAACCTG
GTGCCGGCGTCGAAGAAAGCCCTCGCGCCCCGAAGTGCTGCAAACCCATT
CTAA
back to top