prot_H-elongata_contig76012.15284.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig76012.15284.1
Unique Name	prot_H-elongata_contig76012.15284.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	82

Homology

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BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.200e-18
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 0

Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 82
            L K LY L QSP NW++TI    VEIGF+ LKSDPC+Y++  +   + LTLYVDD+LL G D   ++ ++ KL  R  MTD+
Sbjct:   67 LNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDL 148

[Close]

BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.160e-18
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 0

Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 82
            L K LY L QSP NW++TI    VEIGF+ LKSDPC+Y++  +   + LTLYVDD+LL G D   ++ ++ KL  R  MTD+
Sbjct:  627 LNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDL 708

[Close]

BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.220e-18
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 0

Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 82
            L K LY L QSP NW++TI    VEIGF+ LKSDPC+Y++  +   + LTLYVDD+LL G D   ++ ++ KL  R  MTD+
Sbjct: 1296 LNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDL 1377

[Close]

BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.230e-18
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 0

Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 82
            L K LY L QSP NW++TI    VEIGF+ LKSDPC+Y++  +   + LTLYVDD+LL G D   ++ ++ KL  R  MTD+
Sbjct: 1461 LNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDL 1542

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BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 6.260e-17
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 0

Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 82
            L + LY L QSP NW++TI    VEIGF+ LKSDPC+Y++  +   + LTLYVDD+LL G D   ++ ++ KL  R  MT++
Sbjct: 1077 LNRSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTNL 1158

[Close]

BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.160e-16
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 0

Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 82
            L K LY L QSP+NW+ TI    VEIGF+ LKSD C+Y++      V LTLYVDD+LL G + + ++ I++KL  R  MTD+
Sbjct:  604 LQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDM 685

[Close]

BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.110e-16
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 0

Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 82
            L K LY L QSP+NW+ TI    VEIGF+ LKSD CIY++      V LTLYVDD+LL G +   ++ I++KL  R +MTD+
Sbjct:  195 LQKSLYGLAQSPSNWFHTIDPLLVEIGFVPLKSDTCIYLYDHDDVQVYLTLYVDDLLLAGDNSNAISTIKKKLKQRFNMTDM 276

[Close]

BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.160e-16
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 0

Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 82
            L K LY L QSP+NW+ TI    VEIGF+ LKSD C+Y++      V LTLYVDD+LL G +   ++ I++KL  R  MTD+
Sbjct:  715 LQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSNAISMIKKKLKQRFKMTDM 796

[Close]

BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.550e-16
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 0

Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 82
            L K LY L QSP+NW+ TI    VEIGF+ L+SD C+Y++      V LTLYVDD+LL G +  V+  I+ KL  R  MTD+
Sbjct:  903 LQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQVFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDM 984

[Close]

BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.290e-14
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0

Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKD 62
            L K LY L QSP NW++TI    VEIGF+ LKSDPC+Y++  +   + LTLYVDD+LL G D
Sbjct:  275 LNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGND 336

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot

BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L5U2_9PHAE	4.200e-18	50.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KNH5_9PHAE	5.160e-18	50.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KJH6_9PHAE	5.220e-18	50.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	5.230e-18	50.00	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JYB5_9PHAE	6.260e-17	47.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KL37_9PHAE	1.160e-16	50.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KWT4_9PHAE	2.110e-16	51.22	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KXM1_9PHAE	2.160e-16	50.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KL30_9PHAE	5.550e-16	50.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JME8_9PHAE	2.290e-14	56.45	Reverse transcriptase Ty1/copia-type domain-contai...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..81 e-value: 8.3E-13 score: 48.5

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig76012	contig	H-elongata_contig76012:1840..2085 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig76012.15284.1	mRNA_H-elongata_contig76012.15284.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig76012 1840..2085 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig76012.15284.1 ID=prot_H-elongata_contig76012.15284.1|Name=mRNA_H-elongata_contig76012.15284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILT
LYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2