mRNA_H-elongata_contig76012.15284.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76012.15284.1
Unique NamemRNA_H-elongata_contig76012.15284.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.200e-18
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 246
            L K LY L QSP NW++TI    VEIGF+ LKSDPC+Y++  +   + LTLYVDD+LL G D   ++ ++ KL  R  MTD+
Sbjct:   67 LNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDL 148
[Close]
BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.160e-18
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 246
            L K LY L QSP NW++TI    VEIGF+ LKSDPC+Y++  +   + LTLYVDD+LL G D   ++ ++ KL  R  MTD+
Sbjct:  627 LNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDL 708
[Close]
BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.220e-18
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 246
            L K LY L QSP NW++TI    VEIGF+ LKSDPC+Y++  +   + LTLYVDD+LL G D   ++ ++ KL  R  MTD+
Sbjct: 1296 LNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDL 1377
[Close]
BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.230e-18
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 246
            L K LY L QSP NW++TI    VEIGF+ LKSDPC+Y++  +   + LTLYVDD+LL G D   ++ ++ KL  R  MTD+
Sbjct: 1461 LNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDL 1542
[Close]
BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 6.260e-17
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 246
            L + LY L QSP NW++TI    VEIGF+ LKSDPC+Y++  +   + LTLYVDD+LL G D   ++ ++ KL  R  MT++
Sbjct: 1077 LNRSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTNL 1158
[Close]
BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.160e-16
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 246
            L K LY L QSP+NW+ TI    VEIGF+ LKSD C+Y++      V LTLYVDD+LL G + + ++ I++KL  R  MTD+
Sbjct:  604 LQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDM 685
[Close]
BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.110e-16
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 246
            L K LY L QSP+NW+ TI    VEIGF+ LKSD CIY++      V LTLYVDD+LL G +   ++ I++KL  R +MTD+
Sbjct:  195 LQKSLYGLAQSPSNWFHTIDPLLVEIGFVPLKSDTCIYLYDHDDVQVYLTLYVDDLLLAGDNSNAISTIKKKLKQRFNMTDM 276
[Close]
BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.160e-16
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 246
            L K LY L QSP+NW+ TI    VEIGF+ LKSD C+Y++      V LTLYVDD+LL G +   ++ I++KL  R  MTD+
Sbjct:  715 LQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSNAISMIKKKLKQRFKMTDM 796
[Close]
BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.550e-16
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI 246
            L K LY L QSP+NW+ TI    VEIGF+ L+SD C+Y++      V LTLYVDD+LL G +  V+  I+ KL  R  MTD+
Sbjct:  903 LQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQVFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDM 984
[Close]
BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.290e-14
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILTLYVDDILLLGKD 186
            L K LY L QSP NW++TI    VEIGF+ LKSDPC+Y++  +   + LTLYVDD+LL G D
Sbjct:  275 LNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGND 336
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76012.15284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE4.200e-1850.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE5.160e-1850.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE5.220e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE5.230e-1850.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE6.260e-1747.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE1.160e-1650.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWT4_9PHAE2.110e-1651.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KXM1_9PHAE2.160e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL30_9PHAE5.550e-1650.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE2.290e-1456.45Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76012contigH-elongata_contig76012:1840..2085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score69.7
Seed ortholog evalue7.2e-10
Seed eggNOG ortholog15368.BRADI1G47205.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.471051-CDS-H-elongata_contig76012:1839..20851622931165.471051-CDS-H-elongata_contig76012:1839..2085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76012 1840..2085 +
1691679725.0896113-CDS-H-elongata_contig76012:1839..20851691679725.0896113-CDS-H-elongata_contig76012:1839..2085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76012 1840..2085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76012.15284.1prot_H-elongata_contig76012.15284.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76012 1840..2085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76012.15284.1

>prot_H-elongata_contig76012.15284.1 ID=prot_H-elongata_contig76012.15284.1|Name=mRNA_H-elongata_contig76012.15284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
LIKILYRLRQSPTNWWSTIGKSFVEIGFIILKSDPCIYIFSESRQLVILT
LYVDDILLLGKDLKVLTQIEEKLMGRLSMTDI
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mRNA from alignment at H-elongata_contig76012:1840..2085+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76012.15284.1 ID=mRNA_H-elongata_contig76012.15284.1|Name=mRNA_H-elongata_contig76012.15284.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig76012:1840..2085+ (Himanthalia elongata Himel1 dioecious)
CTTATCAAGATTCTATATCGACTTCGTCAGAGCCCAACCAACTGGTGGAG
TACCATCGGCAAATCCTTCGTGGAGATCGGCTTCATAATCCTCAAATCGG
ACCCATGCATCTACATCTTCTCGGAGAGCAGACAGCTCGTTATTTTGACC
CTGTACGTCGATGACATTCTGCTTCTTGGAAAAGATCTTAAGGTACTCAC
ACAAATCGAGGAAAAGCTGATGGGGCGTTTGTCAATGACGGATATA
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Coding sequence (CDS) from alignment at H-elongata_contig76012:1840..2085+

>mRNA_H-elongata_contig76012.15284.1 ID=mRNA_H-elongata_contig76012.15284.1|Name=mRNA_H-elongata_contig76012.15284.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig76012:1840..2085+ (Himanthalia elongata Himel1 dioecious)
CTTATCAAGATTCTATATCGACTTCGTCAGAGCCCAACCAACTGGTGGAG
TACCATCGGCAAATCCTTCGTGGAGATCGGCTTCATAATCCTCAAATCGG
ACCCATGCATCTACATCTTCTCGGAGAGCAGACAGCTCGTTATTTTGACC
CTGTACGTCGATGACATTCTGCTTCTTGGAAAAGATCTTAAGGTACTCAC
ACAAATCGAGGAAAAGCTGATGGGGCGTTTGTCAATGACGGATATACTTA
TCAAGATTCTATATCGACTTCGTCAGAGCCCAACCAACTGGTGGAGTACC
ATCGGCAAATCCTTCGTGGAGATCGGCTTCATAATCCTCAAATCGGACCC
ATGCATCTACATCTTCTCGGAGAGCAGACAGCTCGTTATTTTGACCCTGT
ACGTCGATGACATTCTGCTTCTTGGAAAAGATCTTAAGGTACTCACACAA
ATCGAGGAAAAGCTGATGGGGCGTTTGTCAATGACGGATATA
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