mRNA_H-elongata_contig7601.15283.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7601.15283.1 vs. uniprot
Match: A0A6H5KU96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU96_9PHAE) HSP 1 Score: 321 bits (822), Expect = 1.140e-98 Identity = 207/388 (53.35%), Postives = 238/388 (61.34%), Query Frame = 1
Query: 199 EFAVDYLLYQSFWRLQEYALKPDVAVKGEKAQDTWKAILHDVDKILGAFEASSFSEDDLRLARAKWTS-----ASLSISSAESSTIEGVSGKGKRK-----------------RGAESGTNVEEEEGAEAYGWRGKNGRGSGYFGLKYLTSSRLLRLQLRDPTLRLQVVLTQWLILAASLKSKVTKDKDSPNSGADLNPRMERAKELVKATPPRGKEYLSMLETVIHREGAWTQWKDVGKCNVIDPVADAEAKAREAAAAA-----APSKPMRKKRRVHTSGVDVERAKRQSFTFAPLVPRFKLGNTVRAARCGVPDTGEHLEDQRMCVEDPETDPSDLPSASPLYTWRALRVVGAEIPTNLANSFEGDLVEVMRYLDEAQNAANARA 1281
EFAVDY LY+SFWRLQEY L+ D VKGE A+ TW+A+L DVDK LGAFEA+SFSE DLRLAR KW + +SS + AE+ +GAE G G YFGLKYLTSSRLLRLQLRDPTLRLQV LTQWLILAASLK+KV KDSPNS DL PR+E AK LVKATPPRG+EYLSML+ V++RE WTQWKDV KC + A+ E E AA APS P K+ R S ERAK ++PL F L R GVP + EHLEDQRMC EDP+T S+LPSASPLYTWRALR++G E P NL ++GDLV+ M LD+AQ A A A
Sbjct: 61 EFAVDYPLYRSFWRLQEYPLQQDKVVKGEGAKATWEALLADVDKTLGAFEANSFSEHDLRLAREKWAADGGGCGGCGLSSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAEAAPAPAARDGAEGETETG----GPVYFGLKYLTSSRLLRLQLRDPTLRLQV-LTQWLILAASLKNKVANAKDSPNSVEDLKPRIELAKRLVKATPPRGEEYLSMLQIVLNRETFWTQWKDVNKCKLAITAAEEEEAQMEKDKAAGVVPRAPSYP-NKRPRPSASVAARERAK-----YSPLGADFPLEKMASKLRAGVPTSQEHLEDQRMCAEDPDTPASELPSASPLYTWRALRLLGRENPANLVGCYDGDLVKAMERLDKAQADAEAAA 437
BLAST of mRNA_H-elongata_contig7601.15283.1 vs. uniprot
Match: D7G2N9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N9_ECTSI) HSP 1 Score: 319 bits (817), Expect = 3.750e-96 Identity = 223/457 (48.80%), Postives = 253/457 (55.36%), Query Frame = 1
Query: 7 EEQFRNAMWGFGGEEEASAARTATASGARVDHMDVDPGISGGGRRVFF*KGAQRXXXXXXXXXX----EFAVDYLLYQSFWRLQEYALKPDVAVKGEKAQDTWKAILHDVDKILGAFEASSFSEDDLRLARAKWTSASLSISSAESSTIEGVSGKGK-----------------------RKRGAESGTNVEEEEGAEAYGWRGKNGRGSGYFGLKYLTSSRLLRLQLRDPTLRLQVVLTQWLILAASLKSKVTKDKDSPNSGADLNPRMERAKELVKATPPRGKEYLSMLETVIHREGAWTQWKDVGKCNVIDPVADAEAKAREAAAAA-----APSKPMRKKRRVHTSGVDVERAKRQSFTFAPLVPRFKLGNTVRAARCGVPDTGEHLEDQRMCVEDPETDPSDLPSASPLYTWRALRVVGAEIPTNLANSFEGDLVEVMRYLDEAQNAANARA 1281
EEQFR AM GF GE+EAS+ XXX EFAV Y LY+SFWRLQEY L+ D VKGE+ + TW+A+L DVDKILGAFEA++FSE DLRLAR KW + R GA E AE G G YFGLKYLTSSRLLRLQLRDPTLRLQV LTQWLILAASLK+KV KDSPNS DL PR+E AK LVKATPPRG+EYLSML+ V++RE WTQWKDV KC + A E RE AA APS P K+ R S ERAK ++PL F L V R GVP + EHLEDQRMC EDP+T S+LPSASPLYTWRALR++G E P NL ++GDLV+ M LD+AQ A A A
Sbjct: 275 EEQFRRAMMGFDGEDEASSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATKLKEGANPQEFAVHYPLYRSFWRLQEYPLQQDKVVKGEETKATWEALLADVDKILGAFEANAFSEHDLRLAREKWAADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAGAAPAPAPAAREVAEGESEEG----GPVYFGLKYLTSSRLLRLQLRDPTLRLQV-LTQWLILAASLKNKVANAKDSPNSVEDLKPRIELAKRLVKATPPRGEEYLSMLQVVLNRETFWTQWKDVNKCKLAMTAAKEEETQREKDKAAGVVARAPSYP-NKRPRPSASVAAGERAK-----YSPLGAGFPLERMVSKLRAGVPTSQEHLEDQRMCAEDPDTPASELPSASPLYTWRALRLLGRENPANLVGCYDGDLVKAMERLDKAQADAEAAA 720
BLAST of mRNA_H-elongata_contig7601.15283.1 vs. uniprot
Match: A0A8K1CPW4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPW4_PYTOL) HSP 1 Score: 99.8 bits (247), Expect = 1.300e-18 Identity = 83/251 (33.07%), Postives = 122/251 (48.61%), Query Frame = 1
Query: 208 VDYLLYQSFWRLQEYALKPDVAVKGEKAQDTWKAILHDVDKILGAFEASSFSEDDLRLARAKWTSASLSIS--SAESSTIEGVSGKGKRKRGAESGTNVEEEEGAEAYGWRGKNGRGSGYFGLKYLTSSRLLRLQLRDPTLRLQVVLTQWLILAASL-KSKVTKDKDSPNSGADLNPRMERAKELVKATPPRGKEYLSMLETVIHREGAWTQWKDVGKCNVIDPVADAEAKAREAAAAAAPSKPMRKKRRV 951
+DY LY++FW LQ + +A K + D W+ +++ +L AFE ++FS DDL R T S++ + + ST++GV +F KYLT+SRL RLQLRDP LR + +LTQ+LIL L K+K + +P S L+ ER +L++ TP GK + +L V+ RE W +WK KC + R AA+A P +P KKRR+
Sbjct: 238 IDYNLYRTFWDLQRFCRDHQLATK---SADDWEKFFDELNTVLSAFEGNAFSRDDLERTRELLTGGGGSVAGDTDDESTVQGVQ---------------------------------DHFFQPKYLTNSRLFRLQLRDPILR-ECMLTQFLILFNHLSKAKQPEGCSTPKS--KLSELQERVMKLLRETPSDGKGFSELLSIVLERERNWIKWKQE-KCPPYE---------RSAASAEGPQEPAPKKRRL 439
BLAST of mRNA_H-elongata_contig7601.15283.1 vs. uniprot
Match: F0YL25_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL25_AURAN) HSP 1 Score: 95.5 bits (236), Expect = 3.110e-17 Identity = 105/354 (29.66%), Postives = 156/354 (44.07%), Query Frame = 1
Query: 205 AVDYLLYQSFWRLQEYALKPDVAVKGEKAQDTWKAILHDVDKILGAFEASSFSEDDLRLARAKWTSASLSISSAESSTIEGVSGKGKRKRGAESGTNVEEEEGAEAYGWRGKNGRGSGYFGLKYLTSSRLLRLQLRDPTLRLQVVLTQWLILAASLKSKVTKDKDSPNSGADLN-------PRMERAKELVKATPPRGKEYLSMLETVIHREGAWTQWKDVGKCNVIDPVADAEAKAREAAAAAAPSKPMRKKRRVHTSGVDVERAKRQSFTFAPLVPRFKLGNTVR--AARCG--VPDTGEHLEDQRMCVEDPETDPSDL--PSASPLYTWRALRVVGAEIPTNLANSFEGDL 1227
A DY Y +FW +Q++ P++A++G + + +A+L ++D A E ++ SED ++ AR W + +R R A+ + A+ G G G KYLT+SRLLR+QLRDP LR+Q+V +L+ + +K SP GA+ P + R ++L+ ATPP G E L LE VI RE W+ WK +G P E + E A S+ ++ V V KR + + T++ AR VP LE + EDPE + P +Y WRALR+V A T A + DL
Sbjct: 18 AHDYATYSAFWAVQKWLSDPNLALRGVEER---RALLANMDACCAALENTAPSEDSVKRARDTWLA--------------------ERVRSAKKNACGSSIQSADI---SGTMQLGIVTMGAKYLTNSRLLRIQLRDPVLRMQLVTQLYLVFDYLRRETAIGNKPSP--GAEFLSKPDWALPVLLRVRKLIIATPPNGPERLKSLEEVIEREVNWSTWKRLGCAPYERPSQSKEQQYAEKRKRALQSER-------YSPPVPVILFKRTKLKAGAKLDARENEGTMKDCCARLADAVPSIEAFLEAYEI-AEDPENSIEEEYHPKHDKVYCWRALRLVVANHLTWFAEMHKADL 335
BLAST of mRNA_H-elongata_contig7601.15283.1 vs. uniprot
Match: F0WMF7_9STRA (THO complex subunit putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMF7_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.130e-16 Identity = 112/371 (30.19%), Postives = 171/371 (46.09%), Query Frame = 1
Query: 208 VDYLLYQSFWRLQEYALKPDVAVKGEKAQDTWKAILHDVDKILGAFEASSFSEDDL-RLARAKWTSASLSISSAESSTIEGVSGKGKRKRGAESGTNVEEEEGAEAYGWRGKNGRGSGYFGLKYLTSSRLLRLQLRDPTLRLQVVLTQWLILAASL-KSKVTKDKDSPNSGADLNPRMERAKELVKATPPRGKEYLSMLETVIHREGAWTQWKDVGKCNVIDPVADAEAK-------AREAAAAAAPSKP--MRKKRRVHTSGVD--VERAKRQSFTFAPLVPRFKLGNTVRAARCGVPDTGEHLEDQRMCVEDPET--DPSDLPSASPLYTWRALRVVGAEIPTNLANSFEGDLVEVMRYLDEAQNAANA 1275
+DY LY FW +Q + D ++ D K L +++ +L AFEA++FS++D R + T + ++SSA +I+ + ++ T+ +E +F KYLT+SRL RLQLRDPTLR + VLTQ LIL + L ++K T +DS +++ +R +L+K TPP G Y M+ +V+ RE WT+WK+ +C + D+ K + EAA + K MRKK + + +D +E +S T K+ RA +P L D+ DP + D P +Y WR LR +G VM YLD A + A A
Sbjct: 207 IDYKLYHIFWDVQRFFR--DYSLAASSVMDK-KTFLEELNMVLTAFEANAFSDEDTTRSSDLNRTVSKSTVSSASKMSIDKI-------MHDDNSTDKLQEH----------------FFQPKYLTNSRLFRLQLRDPTLR-ECVLTQALILLSHLVRAKSTVSQDSTQK-SEMVEAYDRVMKLLKRTPPDGAGYSEMVASVLERERNWTKWKEE-RCPSYEKYPDSSEKLLGSSKRSNEAATEHSGEKKRVMRKKNALESGLMDQILESDASRSSTLLE-----KIKGESRATNIALPK----LMDRFTEAWDPASGIDKEYWPDQDEIYCWRTLR--------------QGMKTHVM-YLDHAIDGAGA 524
BLAST of mRNA_H-elongata_contig7601.15283.1 vs. uniprot
Match: A0A7S1XRN1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRN1_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.480e-16 Identity = 102/328 (31.10%), Postives = 147/328 (44.82%), Query Frame = 1
Query: 208 VDYLLYQSFWRLQEYALKPDVAVKGEKAQDTWKAILHDVDKILGAFEASSFSEDDLRLARAKWTSASLSISSAESSTIEGVSGKGKRKRGAESGTNVEEEEGAEAYGWRGKNGRGSGYFGLKYLTSSRLLRLQLRDPTLRLQVVLTQWLILAASLKSKVTKDKDSPNSGAD-LNPRMERAKELVKATPPRGKEYLSMLETVIHREGAWTQWKDVGKCNVIDPVADAEAKAREAAAAAAPSKPMRKKRRVHTSGVDVERAKRQSFTFAPLVPRFKLGNTVRAARCGVPDTGEHLEDQRMCVEDPETDPSDL--PSASPLYTWRALRVVG 1182
+DY Y+ FW LQ Y K +V +D + L + +L AFE SFS +D R+A A++ +A + V A G VE E A+A KYLTSSRLLRLQLRDP LR QV+L Q LIL L+ + P S + L RA +++ ATPP G ++++ + T + RE AW WK+ C + A E A A +K +++ + + R +S AP V + K + EHLE + + +DPE + P +Y WRA+R+VG
Sbjct: 586 LDYGFYKQFWGLQSYFSKAEVNGPAP-GEDELEDFLECAETVLQAFEGHSFSVEDRRMAAARFENARKASQQVMRPRGASVDAGADASADANGGDEVEVEA-ADA---------SKANLSCKYLTSSRLLRLQLRDPVLRQQVLL-QVLIL---LQRVAGPGRPRPPSLKEPLEALRRRALKILAATPPNGADFVAKVGTFLEREEAWKFWKE-RSCPSFERAAGGPLVEDEQALKLARNKARGGAKKISPALAKLRRIYAESAADAPAVSKDKTPHP-----SSFETMEEHLE-RYLEADDPENGIEEEFHPKNREVYCWRAMRLVG 891
BLAST of mRNA_H-elongata_contig7601.15283.1 vs. uniprot
Match: F0WMF0_9STRA (THO complex subunit putative n=7 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMF0_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.500e-16 Identity = 112/371 (30.19%), Postives = 171/371 (46.09%), Query Frame = 1
Query: 208 VDYLLYQSFWRLQEYALKPDVAVKGEKAQDTWKAILHDVDKILGAFEASSFSEDDL-RLARAKWTSASLSISSAESSTIEGVSGKGKRKRGAESGTNVEEEEGAEAYGWRGKNGRGSGYFGLKYLTSSRLLRLQLRDPTLRLQVVLTQWLILAASL-KSKVTKDKDSPNSGADLNPRMERAKELVKATPPRGKEYLSMLETVIHREGAWTQWKDVGKCNVIDPVADAEAK-------AREAAAAAAPSKP--MRKKRRVHTSGVD--VERAKRQSFTFAPLVPRFKLGNTVRAARCGVPDTGEHLEDQRMCVEDPET--DPSDLPSASPLYTWRALRVVGAEIPTNLANSFEGDLVEVMRYLDEAQNAANA 1275
+DY LY FW +Q + D ++ D K L +++ +L AFEA++FS++D R + T + ++SSA +I+ + ++ T+ +E +F KYLT+SRL RLQLRDPTLR + VLTQ LIL + L ++K T +DS +++ +R +L+K TPP G Y M+ +V+ RE WT+WK+ +C + D+ K + EAA + K MRKK + + +D +E +S T K+ RA +P L D+ DP + D P +Y WR LR +G VM YLD A + A A
Sbjct: 213 IDYKLYHIFWDVQRFFR--DYSLAASSVMDK-KTFLEELNMVLTAFEANAFSDEDTTRSSDLNRTVSKSTVSSASKMSIDKI-------MHDDNSTDKLQEH----------------FFQPKYLTNSRLFRLQLRDPTLR-ECVLTQALILLSHLVRAKSTVSQDSTQK-SEMVEAYDRVMKLLKRTPPDGAGYSEMVASVLERERNWTKWKEE-RCPSYEKYPDSSEKLLGSSKRSNEAATEHSGEKKRVMRKKNALESGLMDQILESDASRSSTLLE-----KIKGESRATNIALPK----LMDRFTEAWDPASGIDKEYWPDQDEIYCWRTLR--------------QGMKTHVM-YLDHAIDGAGA 530
BLAST of mRNA_H-elongata_contig7601.15283.1 vs. uniprot
Match: UPI0018AEBE10 (THO complex subunit 1 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AEBE10) HSP 1 Score: 93.2 bits (230), Expect = 1.860e-16 Identity = 68/217 (31.34%), Postives = 98/217 (45.16%), Query Frame = 1
Query: 205 AVDYLLYQSFWRLQEYALKPDVAVKGEKAQDTWKAILHDVDKILGAFEASSFSEDDLRLARAKWTSASLSISSAESSTIEGVSGKGKRKRGAESGTNVEEEEGAEAYGWRGKNGRGSGYFGLKYLTSSRLLRLQLRDPTLRLQVVLTQWLILAASLKSKVTKDKDSPNSGA--DLNPRMERAKELVKATPPRGKEYLSMLETVIHREGAWTQWKDVG 849
+VD+ Y++FW LQE+ P A W+ + +L FEA SEDD + N+E+EE A F +KYLTSS+L+ L+LRDP+ R + +L Q LIL LKS DKD P+ G ++ ER K+L++ TPP+GKE+L ++ ++ RE W WK G
Sbjct: 241 SVDFNFYKTFWSLQEHFCNP---ASSTLAPSKWQKFVSSFTVVLDTFEAQPLSEDDGNV------------------------------------NNLEQEEAA---------------FSIKYLTSSKLMGLELRDPSFR-RHILVQCLILFDYLKSPGKNDKDGPSEGMKEEIGACEERVKKLLEITPPKGKEFLQSIDHILQREKNWVWWKRDG 402
BLAST of mRNA_H-elongata_contig7601.15283.1 vs. uniprot
Match: A0A484EG24_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EG24_BRELC) HSP 1 Score: 92.4 bits (228), Expect = 3.070e-16 Identity = 72/216 (33.33%), Postives = 110/216 (50.93%), Query Frame = 1
Query: 208 VDYLLYQSFWRLQEYALKPDVAVKGEKAQDTWKAILHDVDKILGAFEASSFSEDDLRLARAKWTSASLSISSAESSTIEGVSGKGKRKRGAESGTNVEEEEGAEAYGWRGKNGRGSGYFGLKYLTSSRLLRLQLRDPTLRLQVVLTQWLILAASLKSKVTKDKDSPNSGADLNPRMERAKELVKATPPRGKEYLSMLETVIHREGAWTQWKDVGKC 855
+DY LY++FW LQ + ++A + + + W+ ++D +L AFE ++FS+DDL +R ++SS + +G+ G N E ++ + +F KYLT+SRL RLQLRDP LR Q +LTQ+LIL L ++ S S A L ER L+K TP G+ + M+ V+ RE W +WK + KC
Sbjct: 243 IDYNLYRTFWDLQTFCRDHELATR---SMENWEKFFTELDMVLAAFEGNAFSQDDLERSR--------NLSSGPIQSADGIMQTSDGNNG-----NCRAELSSQEH-----------FFQPKYLTNSRLFRLQLRDPILR-QCMLTQFLILFNDL-ARAKPPAGSITSKAKLTDLTERVVALLKQTPFDGEGFNEMVSYVLERERNWVKWK-LEKC 428
BLAST of mRNA_H-elongata_contig7601.15283.1 vs. uniprot
Match: A0A7S2W205_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W205_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 3.480e-16 Identity = 79/251 (31.47%), Postives = 112/251 (44.62%), Query Frame = 1
Query: 208 VDYLLYQSFWRLQEYALKPDVAVKGEKAQDTWKAILHDVDKILGAFEASSFSEDDLRLARAKW--------------TSASLSISSAES--STIEGVSGKGKRKRGAESGTNVEEEEGAEAYGWRGKNGRGSGYFGLKYLTSSRLLRLQLRDPTLRLQVVLTQWLILA----------ASLKSKVTKDK---------DSPNSGADLNPRMERAKELVKATPPRGKEYLSMLETVIHREGAWTQWKDVGKC 855
VDY LY+ W LQ + P +A+ W + V +L AFE +F E +L R + T+ L+++ A S+ G G+ K T V +GA G S YFG KYLT+SRLLRLQL DP LRLQV W++ A AS ++ KD + ++P +ER L++ TPP G +Y ++E ++ RE +W WKD KC
Sbjct: 278 VDYELYEHLWGLQRWMASPSLALS---TPAEWASFTETVAHVLRAFEFYAFHEHELEQGRLGYASRRNASLPEHLRGTAPKLAMAPATDALSSDPSTPGGGEPKSMDLDTTPVSARKGASG----GGTSDTSPYFGCKYLTTSRLLRLQLVDPQLRLQVTTQLWVLFAHLKAQAPAAFASGEAAAKKDAVLAAERVVLEPSRVNQTIDPLLERVARLMERTPPNGPQYSGLVEHILGREVSWRLWKDSHKC 521 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7601.15283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7601.15283.1 >prot_H-elongata_contig7601.15283.1 ID=prot_H-elongata_contig7601.15283.1|Name=mRNA_H-elongata_contig7601.15283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=240bp MERAKELVKATPPRGKEYLSMLETVIHREGAWTQWKDVGKCNVIDPVADAback to top mRNA from alignment at H-elongata_contig7601:3603..9905- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7601.15283.1 ID=mRNA_H-elongata_contig7601.15283.1|Name=mRNA_H-elongata_contig7601.15283.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6303bp|location=Sequence derived from alignment at H-elongata_contig7601:3603..9905- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7601:3603..9905- >mRNA_H-elongata_contig7601.15283.1 ID=mRNA_H-elongata_contig7601.15283.1|Name=mRNA_H-elongata_contig7601.15283.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1440bp|location=Sequence derived from alignment at H-elongata_contig7601:3603..9905- (Himanthalia elongata Himel1 dioecious)back to top |