mRNA_H-elongata_contig75990.15281.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75990.15281.1
Unique NamemRNA_H-elongata_contig75990.15281.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75990.15281.1 vs. uniprot
Match: A0A6H5JCG3_9PHAE (Ribosomal_L18_c domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCG3_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 6.940e-120
Identity = 189/262 (72.14%), Postives = 208/262 (79.39%), Query Frame = 1 
Query:    1 CMCQATSRELPRYGVSVGLKNYAAAYCTGLLVARRLLRQLGLDEADDERKMENLYVGQGAXXXXXXXXXXXXXXVDGN-------VVKTESNGRTYYVDEVDEERRPFKALLDVGVRTTSTGNRVFGCMKGAADGGLDVPHNEKRFPGYDRDTKSYDAEVHRDRIYGAHIAEYMEYLTEEDEAKYKEHFAEYIKNEITFDDVEDMYKDCHKAIRQNPSPAPKSKFTPNKSFKNTVKLTYAERKQRVAEKKAELRAANEDDDE 765
            CMCQA+S ELPRYG  VGLKNYAAAYCTGLLVARRLLRQLGLDEADDE+KMENLY GQG         XXXX  VDGN       VVK+ESNGRTYYVDEVDEE+RPFKALLDVG+R+TSTGNRVFGCMKGAADGGLDVPHNEKRFPGYDRDTK YD                      EDEAKYKEHFA YI+NE+TF+D+EDMYK+ HKAIR++PSPAPK+ FTP+KSFKN VKLTYA+RK+RVA KK E+RAA   +DE
Sbjct:   80 CMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQLGLDEADDEKKMENLYTGQGVGVEEDGDDXXXX--VDGNDGTDGLRVVKSESNGRTYYVDEVDEEKRPFKALLDVGIRSTSTGNRVFGCMKGAADGGLDVPHNEKRFPGYDRDTKQYDVS--------------------EDEAKYKEHFASYIENELTFEDIEDMYKETHKAIREDPSPAPKTAFTPDKSFKNAVKLTYAQRKERVAAKKEEIRAARAAEDE 319
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BLAST of mRNA_H-elongata_contig75990.15281.1 vs. uniprot
Match: A0A7S2S5W4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S5W4_9STRA)

HSP 1 Score: 292 bits (748), Expect = 6.150e-96
Identity = 153/254 (60.24%), Postives = 186/254 (73.23%), Query Frame = 1 
Query:    4 MCQATSRELPRYGVSVGLKNYAAAYCTGLLVARRLLRQLGLDEADDERKMENLYVGQGAXXXXXXXXXXXXXXVDGNVVKTESNGRTYYVDEVDEERRPFKALLDVGVRTTSTGNRVFGCMKGAADGGLDVPHNEKRFPGYDRDTKSYDAEVHRDRIYGAHIAEYMEYLTEEDEAKYKEHFAEYIKNEITFDDVEDMYKDCHKAIRQNPSPAPKSKFTPNKSFKNTVKLTYAERKQRVAEKKAELRAANEDDDE 765
            +CQA+S EL RYG+SVGLKNYAAAYCTGLLVARRLL+++GLDE         +Y G                 VDG VV TE N +TYYVDEVDE+RRPF+ALLDVG R T+TG R+FG +KGAADGGLDVPH+EKRFPGYDRD K YDAE+HR+RI+G H+ EYMEYL EED  KYK+ FA YI+ EI  D +E++Y+  H+A+R++PS + K  FTP+KSFK   KL+Y ERK RV  KK   +A  E+DDE
Sbjct:   75 LCQASSAELSRYGLSVGLKNYAAAYCTGLLVARRLLQKVGLDE---------VYEGN--------------TEVDGEVVSTEVNKKTYYVDEVDEDRRPFRALLDVGCRATTTGCRIFGALKGAADGGLDVPHSEKRFPGYDRDGKEYDAEMHRERIFGGHVGEYMEYLEEEDNTKYKQQFASYIEEEIDADGLEELYEGVHEAVREDPSASEKVAFTPDKSFKRPSKLSYDERKARVQAKKDAKKAELEEDDE 305
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BLAST of mRNA_H-elongata_contig75990.15281.1 vs. uniprot
Match: A0A7S1YV59_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YV59_TRICV)

HSP 1 Score: 282 bits (722), Expect = 5.380e-92
Identity = 143/254 (56.30%), Postives = 183/254 (72.05%), Query Frame = 1 
Query:    4 MCQATSRELPRYGVSVGLKNYAAAYCTGLLVARRLLRQLGLDEADDERKMENLYVGQGAXXXXXXXXXXXXXXVDGNVVKTESNGRTYYVDEVDEERRPFKALLDVGVRTTSTGNRVFGCMKGAADGGLDVPHNEKRFPGYDRDTKSYDAEVHRDRIYGAHIAEYMEYLTEEDEAKYKEHFAEYIKNEITFDDVEDMYKDCHKAIRQNPSPAPKSKFTPNKSFKNTVKLTYAERKQRVAEKKAELRAANEDDDE 765
            +CQA S ELPRYG+ VGLKNYAAAYCTGLLVARRLL+++GLDE          Y G                 VDG +V TE +G+ YYVDEVDE++RPF+ LLDVG R T+TG R+FG +KGAADGGLD+PH EKRFPGYDRD+K YDA++H++RI+G H+ EYMEYL EED  KY+E FA+YI+N++  D +E++Y+  H+AIR++PSP+ K  F+P+ S+K   KLT  ERK RV  KK   +A  E+ DE
Sbjct:   75 LCQANSDELPRYGLEVGLKNYAAAYCTGLLVARRLLQKVGLDET---------YEGN--------------TEVDGEIVSTEVDGKKYYVDEVDEDKRPFRCLLDVGCRPTTTGCRIFGALKGAADGGLDIPHTEKRFPGYDRDSKEYDADMHKERIFGGHVGEYMEYLEEEDNQKYQECFAKYIENDVEADGLEELYEGVHEAIREDPSPSEKKDFSPDNSYKRKAKLTLEERKARVQAKKDAKKAELEESDE 305
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BLAST of mRNA_H-elongata_contig75990.15281.1 vs. uniprot
Match: A0A7S2JWI3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JWI3_9STRA)

HSP 1 Score: 281 bits (718), Expect = 7.120e-92
Identity = 142/252 (56.35%), Postives = 185/252 (73.41%), Query Frame = 1 
Query:    4 MCQATSRELPRYGVSVGLKNYAAAYCTGLLVARRLLRQLGLDEADDERKMENLYVGQGAXXXXXXXXXXXXXXVDGNVVKTESNGRTYYVDEVDEERRPFKALLDVGVRTTSTGNRVFGCMKGAADGGLDVPHNEKRFPGYDRDTKSYDAEVHRDRIYGAHIAEYMEYLTEEDEAKYKEHFAEYIKNEITFDDVEDMYKDCHKAIRQNPSPAPKSKFTPNKSFKNTVKLTYAERKQRVAEKKAELRAANEDD 759
            +CQA S EL RYG+SVGLKNYAAAYCTGLL ARRLL+++GLD+         +Y G                 VDG VVKTE +G+TY+VDEVD++++PF+ALLD+G++ T+TG RVFG +KGAADGGLD+PHNEKRFPGYDRD K YDAE+H++RI+G H+ EYMEYL EED  KY+E F  YI+N++  D +E++Y++ H+ IR++PS A K  F P+KS+K   KLT  +RK+RVA KKA  +A  E D
Sbjct:   40 LCQAHSAELERYGLSVGLKNYAAAYCTGLLCARRLLQKIGLDD---------VYEGN--------------TEVDGEVVKTEYDGKTYFVDEVDDDKKPFRALLDIGLKPTTTGCRVFGALKGAADGGLDIPHNEKRFPGYDRDAKEYDAEMHKERIFGGHVGEYMEYLEEEDNQKYQEQFKIYIENDVEADGLEELYEEVHEKIREDPSAAEKKAFEPDKSYKRKAKLTLEQRKERVAAKKAAKKAELEAD 268
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BLAST of mRNA_H-elongata_contig75990.15281.1 vs. uniprot
Match: A0A448Z3Q5_9STRA (Ribosomal_L18_c domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3Q5_9STRA)

HSP 1 Score: 282 bits (721), Expect = 7.620e-92
Identity = 141/243 (58.02%), Postives = 183/243 (75.31%), Query Frame = 1 
Query:    4 MCQATSRELPRYGVSVGLKNYAAAYCTGLLVARRLLRQLGLDEADDERKMENLYVGQGAXXXXXXXXXXXXXXVDGNVVKTESNGRTYYVDEVDEERRPFKALLDVGVRTTSTGNRVFGCMKGAADGGLDVPHNEKRFPGYDRDTKSYDAEVHRDRIYGAHIAEYMEYLTEEDEAKYKEHFAEYIKNEITFDDVEDMYKDCHKAIRQNPSPAPKSKFTPNKSFKNTVKLTYAERKQRVAEKKA 732
            +CQA S EL RYG++VGLKNYAAAYCTGLL ARRLL+++GLDE         +Y G                 VDG VV TE + +TY+V+EVD+++RPF+ALLDVG + T+TG+R+FG +KGAADGGLDVPH+EKRFPGYDRD K YD+++HR+RI+G H++EYMEYL EED  KYKEHFA+YI+ ++  D +E++Y+  H+AIR++PSP+ K  F+P+KSFK   KLTY ERK  VA KKA
Sbjct:   75 LCQAQSTELGRYGLTVGLKNYAAAYCTGLLCARRLLQKVGLDE---------IYEGN--------------TEVDGEVVSTEYDKKTYFVEEVDDDKRPFRALLDVGCKPTTTGHRLFGALKGAADGGLDVPHSEKRFPGYDRDAKEYDSDMHRERIFGGHVSEYMEYLEEEDNQKYKEHFAKYIEADVEGDSLEELYESVHEAIREDPSPSEKKDFSPDKSFKRPAKLTYDERKAAVAAKKA 294
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BLAST of mRNA_H-elongata_contig75990.15281.1 vs. uniprot
Match: A0A836CBG0_9STRA (RL5, ribosomal protein 5 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBG0_9STRA)

HSP 1 Score: 282 bits (721), Expect = 1.120e-91
Identity = 146/239 (61.09%), Postives = 174/239 (72.80%), Query Frame = 1 
Query:    4 MCQATSRELPRYGVSVGLKNYAAAYCTGLLVARRLLRQLGLDEADDERKMENLYVGQGAXXXXXXXXXXXXXXVDGNVVKTESNGRTYYVDEVDEERRPFKALLDVGVRTTSTGNRVFGCMKGAADGGLDVPHNEKRFPGYDRDTKSYDAEVHRDRIYGAHIAEYMEYLTEEDEAKYKEHFAEYIKNEITFDDVEDMYKDCHKAIRQNPSPAPKSKFTPNKSFKNTVKLTYAERKQRVA 720
            +CQA SREL RYG+  GLKNYAAAYCTGLL ARRLL+QLGL E         LY GQ                 +G VVKTE   +TY+V+EVDE++RPF+ALLDVG+  TSTG RVFG MKGAADGGLD+PH+EKRFPGYDRD+K +DAEVH D IYGAH++EYMEYL EEDEA YKEHFA YI+  +  +++ED   + HKAIR++PS APK+ F PNK +K   K TY ERK +VA
Sbjct:   75 LCQANSRELERYGLKTGLKNYAAAYCTGLLCARRLLKQLGLAE---------LYEGQ--------------EEAEGTVVKTEMGKKTYFVEEVDEDKRPFRALLDVGIVATSTGARVFGAMKGAADGGLDIPHSEKRFPGYDRDSKEFDAEVHHDHIYGAHVSEYMEYLMEEDEALYKEHFATYIELGLGPENMEDTLTEVHKAIREDPSAAPKADFKPNKKYKRAAKATYEERKAKVA 290
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BLAST of mRNA_H-elongata_contig75990.15281.1 vs. uniprot
Match: A0A7S4JQQ7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JQQ7_9STRA)

HSP 1 Score: 280 bits (715), Expect = 6.390e-91
Identity = 147/252 (58.33%), Postives = 181/252 (71.83%), Query Frame = 1 
Query:    4 MCQATSRELPRYGVSVGLKNYAAAYCTGLLVARRLLRQLGLDEADDERKMENLYVGQGAXXXXXXXXXXXXXXVDGNVVKTESNGRTYYVDEVDEERRPFKALLDVGVRTTSTGNRVFGCMKGAADGGLDVPHNEKRFPGYDRDTKSYDAEVHRDRIYGAHIAEYMEYLTEEDEAKYKEHFAEYIKNEITFDDVEDMYKDCHKAIRQNPSPAPKSKFTPNKSFKNTVKLTYAERKQRVAEKKAELRAANEDD 759
            + QA+S ELPRYG+SVGLKNYAAAYCTGLLVARR+L++LGLD+         LY G                 VDG VV TE +G TY+VDEVDE++RPF+ LLDVG R T+TG R+FG +KGAADGGLD+PH+EKRFPGYDRD K YDA++HR+RI+G H+ EYMEYL EED  KY+E FA YI N+   D +E++Y+  H+ IR++PS + K  F+P+KSFK   KLT  ERK RV EKKA  RA  E D
Sbjct:   75 LAQASSLELPRYGLSVGLKNYAAAYCTGLLVARRVLQKLGLDD---------LYEGN--------------TDVDGEVVSTEVDGTTYFVDEVDEDKRPFRCLLDVGCRATTTGCRIFGALKGAADGGLDIPHSEKRFPGYDRDAKDYDADMHRERIFGGHVGEYMEYLEEEDNQKYQECFASYIANDNEADGLEELYESVHEKIREDPSSSAKKGFSPDKSFKRKAKLTNEERKVRVEEKKAAKRAELEAD 303
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BLAST of mRNA_H-elongata_contig75990.15281.1 vs. uniprot
Match: A0A1Z5J7J4_FISSO (Large subunit ribosomal protein L5e n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7J4_FISSO)

HSP 1 Score: 279 bits (714), Expect = 8.480e-91
Identity = 142/254 (55.91%), Postives = 186/254 (73.23%), Query Frame = 1 
Query:    4 MCQATSRELPRYGVSVGLKNYAAAYCTGLLVARRLLRQLGLDEADDERKMENLYVGQGAXXXXXXXXXXXXXXVDGNVVKTESNGRTYYVDEVDEERRPFKALLDVGVRTTSTGNRVFGCMKGAADGGLDVPHNEKRFPGYDRDTKSYDAEVHRDRIYGAHIAEYMEYLTEEDEAKYKEHFAEYIKNEITFDDVEDMYKDCHKAIRQNPSPAPKSKFTPNKSFKNTVKLTYAERKQRVAEKK----AELRAANE 753
            + QATS+EL RYG+SVGLKNYAAAYCTGLLVARR+L++LGLD+         +Y G                 VDG +V T+ + + YYVDEVD++++PF+  LDVG RTTSTG R+FG +KGAADGGLD+PH+EKRFPGYDRDTK YDA++HR+RI+G H++EYMEYL EED AKY+ HF  +++N+I  D +E++Y+  H+ IR++PSP+ K +FTP+KS+K   KLT+ ERK RV  KK    AEL A  E
Sbjct:   75 LAQATSKELARYGLSVGLKNYAAAYCTGLLVARRVLQKLGLDD---------VYEGN--------------TEVDGQIVSTDYDNKKYYVDEVDDDKKPFRCFLDVGCRTTSTGCRIFGALKGAADGGLDIPHSEKRFPGYDRDTKEYDADMHRERIFGGHVSEYMEYLEEEDNAKYQSHFKSFLENDIAGDGLEELYEGVHEKIREDPSPSEKKEFTPDKSYKRKSKLTHDERKARVQAKKDAKKAELAADEE 305
[Close]
BLAST of mRNA_H-elongata_contig75990.15281.1 vs. uniprot
Match: A0A7R9ZDP8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZDP8_9STRA)

HSP 1 Score: 279 bits (713), Expect = 2.520e-90
Identity = 144/252 (57.14%), Postives = 179/252 (71.03%), Query Frame = 1 
Query:    4 MCQATSRELPRYGVSVGLKNYAAAYCTGLLVARRLLRQLGLDEADDERKMENLYVGQGAXXXXXXXXXXXXXXVDGNVVKTESNGRTYYVDEVDEERRPFKALLDVGVRTTSTGNRVFGCMKGAADGGLDVPHNEKRFPGYDRDTKSYDAEVHRDRIYGAHIAEYMEYLTEEDEAKYKEHFAEYIKNEITFDDVEDMYKDCHKAIRQNPSPAPKSKFTPNKSFKNTVKLTYAERKQRVAEKKAELRAANEDD 759
            +  A S EL RYG+S GLKNYAAAYCTGLLVARR+L +LGLD+          Y G                 VDG VV TE +G+ Y+VDEVDE++RPF+ LLDVG R T+TG R+FG +KGAADGGLD+PH+EKRFPGYDRD K YDA++HR+RI+G H+ EYMEYL EED  KY+E FA YI N++  D +E++Y+  H+AIR++PSP+ K  F+P+KSFK   KLT  ERK RV EKKA  RA  E+D
Sbjct:   96 LASAYSSELKRYGLSFGLKNYAAAYCTGLLVARRVLEKLGLDDT---------YEGN--------------TDVDGEVVSTEVDGKQYFVDEVDEDKRPFRCLLDVGCRATTTGCRIFGALKGAADGGLDIPHSEKRFPGYDRDAKEYDADMHRERIFGGHVGEYMEYLEEEDNQKYQECFASYIANDVEADGLEELYESVHEAIREDPSPSDKKDFSPDKSFKKKAKLTLEERKARVEEKKAAKRAELEED 324
[Close]
BLAST of mRNA_H-elongata_contig75990.15281.1 vs. uniprot
Match: B5YLN7_THAPS (RL5, ribosomal protein 5, 60S large ribosomal subunit n=2 Tax=Ochrophyta TaxID=2696291 RepID=B5YLN7_THAPS)

HSP 1 Score: 277 bits (709), Expect = 5.020e-90
Identity = 142/255 (55.69%), Postives = 183/255 (71.76%), Query Frame = 1 
Query:    4 MCQATSRELPRYGVSVGLKNYAAAYCTGLLVARRLLRQLGLDEADDERKMENLYVGQGAXXXXXXXXXXXXXXVDGNVVKTESNGRTYYVDEVDEERRPFKALLDVGVRTTSTGNRVFGCMKGAADGGLDVPHNEKRFPGYDRDTKSYDAEVHRDRIYGAHIAEYMEYLTEEDEAKYKEHFAEYIKNEITFDDVEDMYKDCHKAIRQNPSPAPKSKFTPNKSFKNTVKLTYAERKQRVAEKK----AELRAANED 756
            +  A+S ELPRYG+ VGLKNYAA+YCTGLL ARRLL+++GLD+         +Y G                 +DGNVVKT+    TYYVDEVDE++RPF+ALLDVG +TT+TG R+FG +KGAADGGLD+PH+EKRFPGYDRD+K YDA++HR+RI+G H+ EYMEYL EED  KY+  FA Y++NE+  D +E++Y+  H+ IR++PSP+ K  F+P+KSFK   KLT  ERK  V  KK    AEL A +ED
Sbjct:   75 LTSASSNELPRYGLKVGLKNYAASYCTGLLCARRLLQKVGLDD---------VYEGN--------------DEIDGNVVKTQVGKSTYYVDEVDEDKRPFRALLDVGCKTTTTGCRIFGALKGAADGGLDIPHSEKRFPGYDRDSKEYDADMHRERIFGGHVGEYMEYLEEEDNTKYQAQFAGYLENEVEADGLEELYESVHEKIREDPSPSEKKAFSPDKSFKRKAKLTLEERKAAVQSKKDTKNAELEAEDED 306
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75990.15281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG3_9PHAE6.940e-12072.14Ribosomal_L18_c domain-containing protein n=2 Tax=... [more]
A0A7S2S5W4_9STRA6.150e-9660.24Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1YV59_TRICV5.380e-9256.30Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2JWI3_9STRA7.120e-9256.35Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A448Z3Q5_9STRA7.620e-9258.02Ribosomal_L18_c domain-containing protein n=1 Tax=... [more]
A0A836CBG0_9STRA1.120e-9161.09RL5, ribosomal protein 5 60S large ribosomal subun... [more]
A0A7S4JQQ7_9STRA6.390e-9158.33Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5J7J4_FISSO8.480e-9155.91Large subunit ribosomal protein L5e n=2 Tax=Fistul... [more]
A0A7R9ZDP8_9STRA2.520e-9057.14Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B5YLN7_THAPS5.020e-9055.69RL5, ribosomal protein 5, 60S large ribosomal subu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75990contigH-elongata_contig75990:302..2760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score410.2
Seed ortholog evalue6.9e-112
Seed eggNOG ortholog2880.D8LR22
Preferred nameRPL5
KEGG koko:K02932
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000027,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009987,GO:0010035,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010921,GO:0010922,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017101,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0023051,GO:0030162,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0033036,GO:0033365,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035303,GO:0035306,GO:0042176,GO:0042177,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0043043,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045727,GO:0045861,GO:0045937,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051336,GO:0051338,GO:0051340,GO:0051345,GO:0051348,GO:0051351,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0051716,GO:0055105,GO:0055106,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071241,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1902531,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903630,GO:1903632,GO:1904666,GO:1904667,GO:1905015,GO:1905017,GO:1905018,GO:1905020,GO:1905021,GO:1905023,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000434,GO:2000435
EggNOG free text desc.5S rRNA binding
EggNOG OGsCOG0256@1,KOG0875@2759
Ec32 ortholog description60S ribosomal protein L5
Ec32 orthologEc-06_004660.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01009,ko03011
Hectar predicted targeting categoryother localisation
Exons7
Model size768
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75990.15281.1prot_H-elongata_contig75990.15281.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75990 302..2757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.0730429-CDS-H-elongata_contig75990:301..3881622931165.0730429-CDS-H-elongata_contig75990:301..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75990 302..388 -
1691679724.8892176-CDS-H-elongata_contig75990:301..3881691679724.8892176-CDS-H-elongata_contig75990:301..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75990 302..388 -
1622931165.0904243-CDS-H-elongata_contig75990:827..9081622931165.0904243-CDS-H-elongata_contig75990:827..908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75990 828..908 -
1691679724.9010127-CDS-H-elongata_contig75990:827..9081691679724.9010127-CDS-H-elongata_contig75990:827..908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75990 828..908 -
1622931165.1059253-CDS-H-elongata_contig75990:1216..13661622931165.1059253-CDS-H-elongata_contig75990:1216..1366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75990 1217..1366 -
1691679724.9096203-CDS-H-elongata_contig75990:1216..13661691679724.9096203-CDS-H-elongata_contig75990:1216..1366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75990 1217..1366 -
1622931165.1243834-CDS-H-elongata_contig75990:1607..17131622931165.1243834-CDS-H-elongata_contig75990:1607..1713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75990 1608..1713 -
1691679724.9212968-CDS-H-elongata_contig75990:1607..17131691679724.9212968-CDS-H-elongata_contig75990:1607..1713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75990 1608..1713 -
1622931165.1370966-CDS-H-elongata_contig75990:1980..20901622931165.1370966-CDS-H-elongata_contig75990:1980..2090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75990 1981..2090 -
1691679724.9310782-CDS-H-elongata_contig75990:1980..20901691679724.9310782-CDS-H-elongata_contig75990:1980..2090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75990 1981..2090 -
1622931165.1522212-CDS-H-elongata_contig75990:2308..24221622931165.1522212-CDS-H-elongata_contig75990:2308..2422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75990 2309..2422 -
1691679724.9422576-CDS-H-elongata_contig75990:2308..24221691679724.9422576-CDS-H-elongata_contig75990:2308..2422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75990 2309..2422 -
1622931165.1634142-CDS-H-elongata_contig75990:2640..27571622931165.1634142-CDS-H-elongata_contig75990:2640..2757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75990 2641..2757 -
1691679724.9530263-CDS-H-elongata_contig75990:2640..27571691679724.9530263-CDS-H-elongata_contig75990:2640..2757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75990 2641..2757 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931165.1791317-UTR-H-elongata_contig75990:2757..27601622931165.1791317-UTR-H-elongata_contig75990:2757..2760Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75990 2758..2760 -
1691679724.9638054-UTR-H-elongata_contig75990:2757..27601691679724.9638054-UTR-H-elongata_contig75990:2757..2760Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75990 2758..2760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75990.15281.1

>prot_H-elongata_contig75990.15281.1 ID=prot_H-elongata_contig75990.15281.1|Name=mRNA_H-elongata_contig75990.15281.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp
MCQATSRELPRYGVSVGLKNYAAAYCTGLLVARRLLRQLGLDEADDERKM
ENLYVGQGAGADSDGDEEDDEDEVDGNVVKTESNGRTYYVDEVDEERRPF
KALLDVGVRTTSTGNRVFGCMKGAADGGLDVPHNEKRFPGYDRDTKSYDA
EVHRDRIYGAHIAEYMEYLTEEDEAKYKEHFAEYIKNEITFDDVEDMYKD
CHKAIRQNPSPAPKSKFTPNKSFKNTVKLTYAERKQRVAEKKAELRAANE
DDDE*
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mRNA from alignment at H-elongata_contig75990:302..2760-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75990.15281.1 ID=mRNA_H-elongata_contig75990.15281.1|Name=mRNA_H-elongata_contig75990.15281.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2459bp|location=Sequence derived from alignment at H-elongata_contig75990:302..2760- (Himanthalia elongata Himel1 dioecious)
TGCATGTGTCAGGCAACCTCGAGGGAGCTTCCCCGCTACGGCGTCAGCGT
CGGCCTGAAGAACTACGCCGCAGCCTACTGCACGGGGCTTCTTGTTGCCC
GCCGCCTTCTCCGCCAGCTGGTAAGCAAGTAGCTCGCGTTGTCACAAAAG
GGCGCTCGCAGCATTTTTTTCTTGTTCTTGGCCATCTTGATGGCATGCTC
TTTATGTCGAAACCGTGTGCCACTCGTATGAAGCACGAGCTCTAGACTTC
CGGGGCATTGTATAGACAGTTGGGATGTGCGTAAAATCATAATTCGTTTC
TACGGACGCACTTGGTGTTTTTGTAAACGCGCCTATAGGGCCTCGACGAG
GCAGATGATGAGCGTAAGATGGAAAACCTCTACGTAGGTCAGGGCGCCGG
GGCTGACAGCGACGGCGATGAAGAAGACGACGAAGACGAGGTGGACGGAA
ACGTGAGTGGCTGAAGTGGTGCAGTCAAGCTTCGCCTTAGACGCGGAAAT
AAATGGTCGTGCGGTTATAATATCGATTGGATTATAGAGTTAGCCAGATA
GTCGGACCAGCACCTGTAATCTCACCATAGATTATATTTTTCTGCCCTGC
CTCGGATATCCTATACGTATTTTGTCTGGCTGTCCACCGTTGTTGTCCAC
ATTGGTCAACGAACACACAGGTTGTCAAGACGGAGTCCAACGGACGCACG
TACTACGTGGATGAAGTGGATGAGGAGAGGCGTCCTTTCAAGGCCCTCCT
TGACGTTGGCGTCCGCACCACTTCCACCGGGTAGGCGCTTTTCGCTCACT
TTTTTTCTACGCAATATGGCGAAACCCTGATTTGAGCTCTCCACACAAAG
TTTGCGCAACATGGTTCCATTTACGTGGGAGGCTCCTCAACCCTGTAATG
TTGAGTCGTGTCCATTCTCGAAACTTGCCTTCCTCCCTGGTATTTGGTTG
ATCGATTATTTTTCTTGTCCTCCAGCCGTTACTTACGTAAGCGTTGTGGT
CTTTCTATCTCCGCGACCCCCTCCTACTCCCCACTGGCACCTGGCAGAAA
CCGAGTCTTCGGCTGTATGAAGGGCGCGGCCGATGGTGGACTGGACGTTC
CCCACAACGAGAAGCGCTTCCCTGGCTACGACCGCGACACAAAGTCATAT
GACGTGAGTGAAGTAGAAGTCAAGTTTCTCTAGAGGATGGCGAACTACGG
GATATTGCGCGTTGTTCTGTTACTTTTACGTCCTGGGTGACTGGTGGTAT
GCATAGGAGCCCAATATAAAAGGGAGTTCAGGTTGTAGTGTGTAAGCAGC
AATTTCGATCAGTCGCCGCCACAGTGTGACCCGAGTCGAACAAATAAAGA
TGTTGATGTTCATCCTCGAATTCGATCGTATCTCTACGCGACAGGCGGAG
GTGCACCGCGACCGCATCTACGGTGCCCACATCGCCGAATACATGGAGTA
TTTGACGGAGGAAGACGAGGCCAAGTACAAAGAACACTTTGCGGAATATA
TCAAGAATGAGATCACTTTCGATGATGTCGAAGACATGTACAAGGTAAGA
CGAACGTTGCAATGTTAGGACGACAGTGGTCGTAGCTGCTCCGACATTAC
CGTTCGCTGATCCGTTGCAGTGCTGTTTTTGTCGATGCCCCCCCCCCCCC
CAATAAGTATGACGCCTGTCGATACTTACTAATCGTAAGACATTTCGAAC
GCCCCGCGGTGCATTTGTGAGACTTTGTGTCATTACTGTCCTTGAAGTAA
CGTGGTGCACTTCTCGACGTCGGAGATGTTGTGTTTTGCTCCCACTTATT
TTCATGAACACCAAAACACTCTTCTCCTCTCACACGCGTCTTTGTTTCGC
AGGATTGTCACAAGGCGATCCGCCAAAACCCCTCGCCCGCCCCGAAGTCA
AAATTCACCCCGAACAAGTCCTTCAAGAACACGGTACGATTCGATTCGGG
CGGCTTTCCTTGGCCTTTACAGCGTTTTACTATAATGCTTGGGGTCGTGA
GAAAAAACGCAAAAAAAAAAGAAGAATAAACCCCTCCTCTGTACCTGCCA
CTTGTTCGATATGTTTTGATGTTGTACCAACGTGACGAATAGCGTAATTG
AACTGTATAACGACGGCACTTTCTTTTGAAATATTTTGACATAATAATGC
CTAGTTATTATAGTAATGTAAACACATGTCTAGTTATTATAGTAATGTAA
GCACTCGAATCTGACGATAGTAGAACGTTTAGACTTCACCTCTAATGTTG
TAAATATATGGGTTTTCGGAGGGTTTGAAAGAGTTCGTTTCGATGTTTTT
CCCAACTGCCGCGATCACACCTTTTCACCCTTTTTTCTTACCCTCGTAAA
TGTGGCGGGTCAATTTTTCCAGGTCAAGCTTACCTACGCAGAGCGCAAGC
AGAGAGTTGCCGAGAAAAAGGCAGAACTCAGGGCCGCCAACGAGGACGAT
GACGAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig75990:302..2760-

>mRNA_H-elongata_contig75990.15281.1 ID=mRNA_H-elongata_contig75990.15281.1|Name=mRNA_H-elongata_contig75990.15281.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig75990:302..2760- (Himanthalia elongata Himel1 dioecious)
ATGTGTCAGGCAACCTCGAGGGAGCTTCCCCGCTACGGCGTCAGCGTCGG
CCTGAAGAACTACGCCGCAGCCTACTGCACGGGGCTTCTTGTTGCCCGCC
GCCTTCTCCGCCAGCTGATGTGTCAGGCAACCTCGAGGGAGCTTCCCCGC
TACGGCGTCAGCGTCGGCCTGAAGAACTACGCCGCAGCCTACTGCACGGG
GCTTCTTGTTGCCCGCCGCCTTCTCCGCCAGCTGGGCCTCGACGAGGCAG
ATGATGAGCGTAAGATGGAAAACCTCTACGTAGGTCAGGGCGCCGGGGCT
GACAGCGACGGCGATGAAGAAGACGACGAAGACGAGGTGGACGGAAACGG
CCTCGACGAGGCAGATGATGAGCGTAAGATGGAAAACCTCTACGTAGGTC
AGGGCGCCGGGGCTGACAGCGACGGCGATGAAGAAGACGACGAAGACGAG
GTGGACGGAAACGTTGTCAAGACGGAGTCCAACGGACGCACGTACTACGT
GGATGAAGTGGATGAGGAGAGGCGTCCTTTCAAGGCCCTCCTTGACGTTG
GCGTCCGCACCACTTCCACCGGGTTGTCAAGACGGAGTCCAACGGACGCA
CGTACTACGTGGATGAAGTGGATGAGGAGAGGCGTCCTTTCAAGGCCCTC
CTTGACGTTGGCGTCCGCACCACTTCCACCGGAAACCGAGTCTTCGGCTG
TATGAAGGGCGCGGCCGATGGTGGACTGGACGTTCCCCACAACGAGAAGC
GCTTCCCTGGCTACGACCGCGACACAAAGTCATATGACAAACCGAGTCTT
CGGCTGTATGAAGGGCGCGGCCGATGGTGGACTGGACGTTCCCCACAACG
AGAAGCGCTTCCCTGGCTACGACCGCGACACAAAGTCATATGACGCGGAG
GTGCACCGCGACCGCATCTACGGTGCCCACATCGCCGAATACATGGAGTA
TTTGACGGAGGAAGACGAGGCCAAGTACAAAGAACACTTTGCGGAATATA
TCAAGAATGAGATCACTTTCGATGATGTCGAAGACATGTACAAGGCGGAG
GTGCACCGCGACCGCATCTACGGTGCCCACATCGCCGAATACATGGAGTA
TTTGACGGAGGAAGACGAGGCCAAGTACAAAGAACACTTTGCGGAATATA
TCAAGAATGAGATCACTTTCGATGATGTCGAAGACATGTACAAGGATTGT
CACAAGGCGATCCGCCAAAACCCCTCGCCCGCCCCGAAGTCAAAATTCAC
CCCGAACAAGTCCTTCAAGAACACGGATTGTCACAAGGCGATCCGCCAAA
ACCCCTCGCCCGCCCCGAAGTCAAAATTCACCCCGAACAAGTCCTTCAAG
AACACGGTCAAGCTTACCTACGCAGAGCGCAAGCAGAGAGTTGCCGAGAA
AAAGGCAGAACTCAGGGCCGCCAACGAGGACGATGACGAGTAAGTCAAGC
TTACCTACGCAGAGCGCAAGCAGAGAGTTGCCGAGAAAAAGGCAGAACTC
AGGGCCGCCAACGAGGACGATGACGAGTAA
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