mRNA_H-elongata_contig7590.15277.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7590.15277.1 vs. uniprot
Match: A0A6H5K573_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K573_9PHAE) HSP 1 Score: 210 bits (535), Expect = 2.660e-63 Identity = 115/220 (52.27%), Postives = 149/220 (67.73%), Query Frame = 1
Query: 1 RHPMWGGA---TG-SALATTGSIRSALAVVLESYGIRSMLDAPCGDATWINLVSGIDGVRYTGVDISQKVIGHNRKRLSGAVFDPFDSEVDKVA--VDDAMERGQGLRHPT-------------------------DLMLHLPARHNLRVLRNIQASGARFLMASTFVNANENHVSETFVPPVGHSINLSLPPYCLPEPIALIKDDSSDRPDLRMGLWEV 567
RHP W G TG S L++T SIRS L+ V+ ++ I+SMLDAPCGD +W+ LVSGI V+YTG DI + + NRK+ + + D ++ KV + AM RG+GL+ P DLM+HLPARHNL+V++NIQASGARFLMAST+V A+EN +SETFVPP+GH+INLSLPPYCLPEP+A+ DDS+ R DLRMGLW++
Sbjct: 194 RHPSWYGRIPLTGASKLSSTFSIRSGLSKVISAFNIKSMLDAPCGDLSWMPLVSGIQNVQYTGADIVEIAVETNRKKFGADITEIRDEDL-KVGREIAAAMRRGEGLKDPAFVVADLVESVPASQDGAPFDLVFVRDLMVHLPARHNLKVIQNIQASGARFLMASTYVEADENKLSETFVPPMGHNINLSLPPYCLPEPMAVFLDDSTKRTDLRMGLWDL 412
BLAST of mRNA_H-elongata_contig7590.15277.1 vs. uniprot
Match: D7FTE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE5_ECTSI) HSP 1 Score: 164 bits (414), Expect = 2.910e-45 Identity = 93/201 (46.27%), Postives = 123/201 (61.19%), Query Frame = 1
Query: 28 GSALATTGSIRSALAVVLESYGIRSMLDAPCGDATWINLVSGIDGVRYTGVDISQKVIGHNRKRLS-------------------GAVFDPFDSEVDKVA-VDDAME-RGQGLRHPTDLMLHLPARHNLRVLRNIQASGARFLMASTFVNANENHVSETFVPPVGHSINLSLPPYCLPEPIALIKDDSSDRPDLRMGLWEV 567
GS + T IR AL V+ S+G+ S+LDAPCGDATW+ LV GID VRY G DIS ++ NR++ S G + + + D V + +M+ + L D+MLHL RHN+R+L+NI+ASGARFLMAST V+ N+N ++TF P +G +NLSLPPYCL PIAL D +RP RMGLWE+
Sbjct: 217 GSTVHNTNRIRLALEEVIRSHGVTSILDAPCGDATWMPLVRGIDQVRYLGADISPSIVEDNRRKFSKLQDHSGGSGDEAVASANAGGLHEDSFIQADLVERIPPSMDGKPYDLIFVRDVMLHLAPRHNVRMLQNIEASGARFLMASTNVDGNDNWKADTFRPAIGLLVNLSLPPYCLRPPIALYSDAMPERPGQRMGLWEL 417
BLAST of mRNA_H-elongata_contig7590.15277.1 vs. uniprot
Match: A0A6H5JDW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDW5_9PHAE) HSP 1 Score: 157 bits (396), Expect = 4.050e-44 Identity = 95/201 (47.26%), Postives = 119/201 (59.20%), Query Frame = 1
Query: 28 GSALATTGSIRSALAVVLESYGIRSMLDAPCGDATWINLVSGIDGVRYTGVDISQKVIGHNRKRLSGAVFDPFDSEVDKVAVD-------------DAMER--------GQGLRHPTDLMLHLPARHNLRVLRNIQASGARFLMASTFVNANENHVSETFVPPVGHSINLSLPPYCLPEPIALIKDDSSDRPDLRMGLWEV 567
GS + T IR AL V+ S G+ S+LDAPCGDATW+ LV GID VRY GVDIS V+ NR++ S S + VA D +ER L D+MLHL +HN+++L+NI+ASGARFLMAST V+ N+N ++TF P G +NLSLPPYCL PIAL D +RP RMGLWE+
Sbjct: 60 GSTVHNTNRIRLALEEVIRSNGVTSILDAPCGDATWMPLVRGIDQVRYLGVDISPSVVEDNRRKFSKLQDHSGGSGDEAVASASAGGLHGASFIQADLVERIPPSMDGKPYDLIFLRDVMLHLARQHNVQMLQNIEASGARFLMASTNVDGNDNWKADTFRPADGLLVNLSLPPYCLRPPIALYSDAIPERPGQRMGLWEL 260
BLAST of mRNA_H-elongata_contig7590.15277.1 vs. uniprot
Match: A0A8J6XRY4_9CYAN (Class I SAM-dependent methyltransferase n=1 Tax=Iningainema tapete BLCC-T55 TaxID=2748662 RepID=A0A8J6XRY4_9CYAN) HSP 1 Score: 105 bits (261), Expect = 1.430e-24 Identity = 62/186 (33.33%), Postives = 100/186 (53.76%), Query Frame = 1
Query: 28 GSALATTGSIRSALAVVLESYGIRSMLDAPCGDATWINLVSGIDGVRYTGVDISQKVIGHNRKRLSGAVFDPFDSEVDKVAVDDAMERGQGLRHPTDLMLHLPARHNLRVLRNIQASGARFLMASTFVNANENHVSETFVPPVGH--SINLSLPPYCLPEPIALIKDDSSD---RPDLRMGLWEVR 570
GS LATT +IR+ + +L +GI+S+LDAPCGD W+ + ++G+ YTG+D+ ++I N+ A ++ K ++ A L D ++HLP R LR Q S +R+L+ +T+ +N + VG +NL LPP+ LP P+ + D S D PD +GLW+++
Sbjct: 24 GSELATTVAIRTVVLELLAQFGIKSILDAPCGDFNWMRHIP-LNGITYTGIDVVSEMIEKNQVNYGNATIQFMTGDITKNSLPQA-----DLIICRDCLVHLPLRDGCLALRQFQQSSSRYLLTTTYPATTQNRDAA-----VGSWKPLNLCLPPFSLPTPLMIFSDPSDDTGANPDKSIGLWDLQ 198
BLAST of mRNA_H-elongata_contig7590.15277.1 vs. uniprot
Match: A0A4R6SCV1_9PSEU (Uncharacterized protein n=1 Tax=Labedaea rhizosphaerae TaxID=598644 RepID=A0A4R6SCV1_9PSEU) HSP 1 Score: 99.0 bits (245), Expect = 4.180e-22 Identity = 71/200 (35.50%), Postives = 101/200 (50.50%), Query Frame = 1
Query: 1 RHPMWGGAT-----GSALATTGSIRSALAVVLESYGIRSMLDAPCGDATWINLVSGIDGVRYTGVDISQKVIGHNRKRLSGAVFDPFDSEVDKVAVDDAMERGQGLRHPTDLMLHLPARHNLRVLRNIQASGARFLMASTFVNANENHVSETFVPPVG--HSINLSLPPYCLPEPI-ALIKDDSS---DRPDLRMGLWEV 567
RH +W G GS A T ++R L +L +G+RS+LD PCGD+ W+ V +DGV Y G DI +++ NR R +GA FD D D + D L D ++HLP L L NI S ++L+ +TF N P G +NL +PP+ LPEP+ +++ D S D P +GLWE+
Sbjct: 46 RHNLWEGGESAAGEGSDRAATRNVRDQLPGLLRRWGVRSILDLPCGDSAWLASVP-LDGVDYLGGDIVDEIVARNRGR-TGARFDVLDITKDDLPAAD-------LLLCRDCLVHLPTSDVLGALANIARSRCKYLLTTTFSRLTRNVDI-----PAGDWRPLNLRMPPFGLPEPLDTIVEVDLSAIGDLPVKALGLWEI 231
BLAST of mRNA_H-elongata_contig7590.15277.1 vs. uniprot
Match: A0A1Q3W0E2_9BRAD (Uncharacterized protein n=1 Tax=Afipia sp. 64-13 TaxID=1895701 RepID=A0A1Q3W0E2_9BRAD) HSP 1 Score: 98.2 bits (243), Expect = 9.300e-22 Identity = 65/188 (34.57%), Postives = 101/188 (53.72%), Query Frame = 1
Query: 25 TGSALATTGSIRSALAVVLESYGIRSMLDAPCGDATWINLVSGIDGVRYTGVDISQKVIGHNRKRLSGAV--FDPFDSEVDKVAVDDAMERGQGLRHPTDLMLHLPARHNLRVLRNIQASGARFLMASTFVNANENHVSETFVPPVGHSI-NLSLPPYCLPEPIALIKDDSSDRP----DLRMGLWEV 567
TGSAL T ++R+ +A V+ +GIRS+LDAPCGD W+ V + G+ YTG DI + V+ N+ + A F D VD + D L D ++HL LRN+ ASG+ +LM +TF + N T + G + NL+ PP+ LP P+ L+ ++ +++ D +GLW++
Sbjct: 53 TGSALGQTETVRAGVADVIRDFGIRSILDAPCGDFNWMQHVD-LSGLEYTGADIVEAVVARNQAQHQRANLRFTKLDITVDALPAAD-------LVLCRDCLVHLSYADAFAALRNMIASGSTYLMTTTFADRAAN----TDIKTGGWRVLNLARPPFSLPPPLRLLNENCTEKKGIYRDKSLGLWKL 228
BLAST of mRNA_H-elongata_contig7590.15277.1 vs. uniprot
Match: A0A2N2I077_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2 TaxID=2013747 RepID=A0A2N2I077_9DELT) HSP 1 Score: 97.1 bits (240), Expect = 1.520e-21 Identity = 66/196 (33.67%), Postives = 106/196 (54.08%), Query Frame = 1
Query: 1 RHPMWGGATGSALATTGSIRSALAVVLESYGIRSMLDAPCGDATWINLVSGIDGVRYTGVDISQKVIGHNRKRLSGAVFDPFDSEVDKVAVDDAMERGQGLRHPTDLMLHLPARHNLRVLRNIQASGARFLMASTFVNANEN--HVSETFVPPVGHSINLSLPPYCLPEPIALIKDDSSDR----PDLRMGLWEVR 570
RHP G GS+L T IR +A +L Y IRS++D PCGD TW+++V+ ++GV Y G DI + +I N+K+ + + + + + M L D ++HL L+ L N++ SG+ +L+ +TF NA+EN VS P +NL P+ LPEP+ LI ++ ++ D +GLW ++
Sbjct: 36 RHPSSG--IGSSLEQTAVIRQEIAKLLVDYKIRSLVDVPCGDFTWMSIVN-LEGVEYQGFDIVEHIIVANKKKYAA-----HNLKFGVLDIVKEMPTKADLIFCRDCLVHLSNLDALKALSNLKKSGSSYLLTTTFPNADENVDMVSARGWRP----LNLQKQPFNLPEPLLLINENCTESGGIYSDKSLGLWLIK 219
BLAST of mRNA_H-elongata_contig7590.15277.1 vs. uniprot
Match: A0A1B1YWL5_9GAMM (Methyltransf_11 domain-containing protein n=1 Tax=Immundisolibacter cernigliae TaxID=1810504 RepID=A0A1B1YWL5_9GAMM) HSP 1 Score: 94.4 bits (233), Expect = 1.930e-20 Identity = 71/203 (34.98%), Postives = 101/203 (49.75%), Query Frame = 1
Query: 1 RHPMWGG-----ATGSALATTGSIRSALAVVLESYGIRSMLDAPCGDATWINLVSGIDGVRYTGVDISQKVIGHNRKRLS--GAVFDPFDSEVDKV-AVDDAMERGQGLRHPTDLMLHLPARHNLRVLRNIQASGARFLMASTFVNANENHVSETFVPPVG--HSINLSLPPYCLPEPIALIKDDSSDRP----DLRMGLWEV 567
R WGG TGS T I L ++L G+RS+LD PCGD W+ V + G+ Y G DI +I NR+R + G F D D++ AVD + R D ++HL + L NI ASGAR+L+ +TF +EN P G ++NL PP+ LP+P+ LI + +++ D +GLW V
Sbjct: 35 RRNKWGGRHSLSGTGSDADQTRVIVRELPLLLRRLGVRSVLDVPCGDFEWMKRVD-LTGIEYIGADIVVPLIDTNRRRRARPGVDFQVLDLTRDRLPAVDLVLCR--------DCLVHLSFAQAQQALANIAASGARYLLTTTFTGRSENADI-----PTGKWRALNLQRPPFNLPQPLELINERCTEKDGRYADKSLGLWPV 223
BLAST of mRNA_H-elongata_contig7590.15277.1 vs. uniprot
Match: A0A7V9PGL7_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7V9PGL7_9BACT) HSP 1 Score: 93.2 bits (230), Expect = 4.910e-20 Identity = 65/182 (35.71%), Postives = 86/182 (47.25%), Query Frame = 1
Query: 28 GSALATTGSIRSALAVVLESYGIRSMLDAPCGDATWINLVSGIDGVRYTGVDISQKVIGHNRKRLSGAV--FDPFDSEVDKVAVDDAMERGQGLRHPTDLMLHLPARHNLRVLRNIQASGARFLMASTFVNANEN-HVSETFVPPVGHSINLSLPPYCLPEPIALIKDDSSDRPDLRMGLWE 564
GS LA T ++R L +L+S G+ SMLDAPCGD W V V YTG DI ++++ NR R A F D D + D L D + HL + RVL N + S R+L+ ST N +S +NL L P+ LPEP+ +I D P +M LWE
Sbjct: 47 GSTLAYTANLRRELPKLLDSLGVTSMLDAPCGDYNWFQHVRDASAVEYTGGDIVEELVRRNRARYGNASTHFVRLDITRDPLPAAD-------LLMCRDCLFHLAEQDIFRVLDNFRHSDIRWLLTSTHSKCERNVDISSGGF----RELNLQLAPFALPEPVLMIDDWVEGFPVRQMALWE 217
BLAST of mRNA_H-elongata_contig7590.15277.1 vs. uniprot
Match: A0A5C7ZVD6_9FLAO (Class I SAM-dependent methyltransferase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A5C7ZVD6_9FLAO) HSP 1 Score: 93.2 bits (230), Expect = 6.390e-20 Identity = 67/191 (35.08%), Postives = 97/191 (50.79%), Query Frame = 1
Query: 25 TGSALATTGSIRSALAVVLESYGIRSMLDAPCGDATWINLVSGIDGVRYTGVDISQKVIGHNRKRLSGAV---FDPFDSEVDKVAVDDAMERGQGLRHPTDLMLHLPARHNLRVLRNIQASGARFLMASTFVNANENHVSETFVPPVG--HSINLSLPPYCLPEPIALIKDDSSDRP----DLRMGLWEVR 570
TGS L T ++ AL + + + I+S+LD PCGD W+ V +DGVRY G DI +K+I NR R + F D D + D L D M+HLP VL+ I+ASG+R+L+A+TF EN +G +NL++ P+ LP P+ LI + + D M LW++R
Sbjct: 59 TGSELGQTVALVHALPALFKEFDIKSILDVPCGDLNWMKEVP-LDGVRYIGGDIVEKLIHRNRARFTARPELEFRVLDLLKDPLPTTD-------LVLVRDCMVHLPLADITTVLQRIKASGSRYLLATTFTRHAENRDIR-----MGDWRPVNLTVAPFNLPTPLRLIDEGCMEGEGRYGDKAMALWDLR 236 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7590.15277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7590.15277.1 >prot_H-elongata_contig7590.15277.1 ID=prot_H-elongata_contig7590.15277.1|Name=mRNA_H-elongata_contig7590.15277.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp MWGGATGSALATTGSIRSALAVVLESYGIRSMLDAPCGDATWINLVSGIDback to top mRNA from alignment at H-elongata_contig7590:7498..8548+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7590.15277.1 ID=mRNA_H-elongata_contig7590.15277.1|Name=mRNA_H-elongata_contig7590.15277.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1051bp|location=Sequence derived from alignment at H-elongata_contig7590:7498..8548+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7590:7498..8548+ >mRNA_H-elongata_contig7590.15277.1 ID=mRNA_H-elongata_contig7590.15277.1|Name=mRNA_H-elongata_contig7590.15277.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig7590:7498..8548+ (Himanthalia elongata Himel1 dioecious)back to top |