mRNA_H-elongata_contig119824.1528.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119824.1528.1
Unique NamemRNA_H-elongata_contig119824.1528.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig119824.1528.1 vs. uniprot
Match: D7FGX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX0_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.120e-28
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 DGFDIAGSFLLRSLAKPSLNVDLSLRIPSKCLVPRDSLNHRYLDKRALYAGHLAAAAMDKEGRLGKLI 204
            DGFD+AGSFLLRSLAKPSLNVDL+LR+PS+C+V RDSLNHRYLDKRALYAGH+A  AMD  G LGKL+
Sbjct:  179 DGFDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHVAKTAMDAAGSLGKLV 246
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BLAST of mRNA_H-elongata_contig119824.1528.1 vs. uniprot
Match: A0A6H5JEV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV9_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 2.090e-28
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 DGFDIAGSFLLRSLAKPSLNVDLSLRIPSKCLVPRDSLNHRYLDKRALYAGHLAAAAMDKEGRLGKLI 204
            +GFD+AGSFLLRSLAKPSLNVDL+LR+PS+C+V RDSLNHRYLDKRALYAGHLA  AMD  G LGKL+
Sbjct:  184 NGFDVAGSFLLRSLAKPSLNVDLALRMPSECIVSRDSLNHRYLDKRALYAGHLAKTAMDAAGALGKLV 251
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BLAST of mRNA_H-elongata_contig119824.1528.1 vs. uniprot
Match: L1JNQ1_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JNQ1_GUITC)

HSP 1 Score: 60.1 bits (144), Expect = 6.500e-9
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   10 DIAGSFLLRSLAKPSLNVDLSLRIPSKCLVPRDSLNHRYLDKRALYAGHLAAA 168
            ++ GSFLLR+L KP LNVD+++ +P+ CL  +D LN R++ KR +Y  H+A A
Sbjct:  170 ELVGSFLLRTLVKPDLNVDMAVEMPADCLHAKDFLNGRFMYKRNMYLSHIAKA 222
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BLAST of mRNA_H-elongata_contig119824.1528.1 vs. uniprot
Match: UPI001455CC0A (nucleolar protein 6-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455CC0A)

HSP 1 Score: 60.1 bits (144), Expect = 6.500e-9
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   13 IAGSFLLRSLAKPSLNVDLSLRIPSKCLVPRDSLNHRYLDKRALYAGHLA 162
            + GSFLL +L +P LN+DL+L +P  C  P+D LN RY  KRALY  +LA
Sbjct:  128 VVGSFLLDTLTRPDLNIDLALEMPQSCRQPKDYLNFRYHHKRALYCAYLA 177
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BLAST of mRNA_H-elongata_contig119824.1528.1 vs. uniprot
Match: A0A803Q1Y2_CANSA (Uncharacterized protein n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A803Q1Y2_CANSA)

HSP 1 Score: 58.5 bits (140), Expect = 2.270e-8
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 FDIAGSFLLRSLAKPSLNVDLSLRIPSKCLVPRDSLNHRYLDKRALY 147
            F+I GS+ ++ +AKP +NVDL LR+P +C   +D LNHRY  KR LY
Sbjct:   71 FEIGGSYSIKCIAKPDINVDLFLRLPKECFHEKDYLNHRYHGKRCLY 117
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BLAST of mRNA_H-elongata_contig119824.1528.1 vs. uniprot
Match: S8E1Q7_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8E1Q7_9LAMI)

HSP 1 Score: 57.8 bits (138), Expect = 4.230e-8
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   10 DIAGSFLLRSLAKPSLNVDLSLRIPSKCLVPRDSLNHRYLDKRALY 147
            +I GS+ +RS+AKP +N+DL LR+P +C   +D LNHRY  KR LY
Sbjct:   70 EIGGSYSIRSVAKPDVNIDLFLRLPKECFYEKDYLNHRYHAKRFLY 115
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BLAST of mRNA_H-elongata_contig119824.1528.1 vs. uniprot
Match: B9ST37_RICCO (Nucleolar RNA-associated protein, putative n=2 Tax=Ricinus communis TaxID=3988 RepID=B9ST37_RICCO)

HSP 1 Score: 56.6 bits (135), Expect = 1.080e-7
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 FDIAGSFLLRSLAKPSLNVDLSLRIPSKCLVPRDSLNHRYLDKRALY 147
            F+I GS+ ++ +AKPS+NVDL L +P +C   +D LNHRY  KR LY
Sbjct:   77 FEIRGSYSIKCIAKPSINVDLFLHLPKECFHEKDYLNHRYHAKRFLY 123
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BLAST of mRNA_H-elongata_contig119824.1528.1 vs. uniprot
Match: A0A7I8JX86_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JX86_SPIIN)

HSP 1 Score: 56.6 bits (135), Expect = 1.080e-7
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   13 IAGSFLLRSLAKPSLNVDLSLRIPSKCLVPRDSLNHRYLDKRALY 147
            +AGS  +RS+AKP +NVDL +R+P KC + +D +NHRY  +R LY
Sbjct:   79 VAGSHSIRSIAKPDVNVDLLVRMPRKCFLEKDYMNHRYHARRCLY 123
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BLAST of mRNA_H-elongata_contig119824.1528.1 vs. uniprot
Match: A0A444CCS9_ENSVE (Nrap domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444CCS9_ENSVE)

HSP 1 Score: 56.2 bits (134), Expect = 1.180e-7
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 DGFDIAGSFLLRSLAKPSLNVDLSLRIPSKCLVPRDSLNHRYLDKRALY 147
            +   + GS+ +RS+AKP +NVDL +R+P +C   +D LNHRY  KR LY
Sbjct:   72 ESIQVGGSYSIRSVAKPDINVDLLVRMPKECFHEKDYLNHRYHAKRLLY 120
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BLAST of mRNA_H-elongata_contig119824.1528.1 vs. uniprot
Match: A0A0M0JU12_9EUKA (Nucleolar protein 6 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JU12_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 1.290e-7
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   10 DIAGSFLLRSLAKPSLNVDLSLRIPSKCLVPRDSLNHRYLDKRALYAGHLA 162
            D+ GS+LLR++  P LNVD+++ +P+   + +D L+ RY DKR LY  HLA
Sbjct:  112 DLVGSYLLRTVTAPELNVDVAVELPASMFLEKDYLDQRYADKRLLYLTHLA 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119824.1528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGX0_ECTSI1.120e-2880.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEV9_9PHAE2.090e-2880.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
L1JNQ1_GUITC6.500e-949.06Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
UPI001455CC0A6.500e-954.00nucleolar protein 6-like n=1 Tax=Asterias rubens T... [more]
A0A803Q1Y2_CANSA2.270e-853.19Uncharacterized protein n=4 Tax=Cannabis sativa Ta... [more]
S8E1Q7_9LAMI4.230e-854.35Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
B9ST37_RICCO1.080e-753.19Nucleolar RNA-associated protein, putative n=2 Tax... [more]
A0A7I8JX86_SPIIN1.080e-753.33Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A444CCS9_ENSVE1.180e-748.98Nrap domain-containing protein n=1 Tax=Ensete vent... [more]
A0A0M0JU12_9EUKA1.290e-747.06Nucleolar protein 6 n=1 Tax=Chrysochromulina tobin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119824contigH-elongata_contig119824:270..473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue3.2e-24
Seed eggNOG ortholog2880.D7FGX0
Preferred nameNOL6
KEGG koko:K08018,ko:K14544
KEGG Pathwayko03008,ko04010,ko04015,ko04530,map03008,map04010,map04015,map04530
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000462,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030628,GO:0030684,GO:0030686,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0036002,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0089701,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.tRNA export from nucleus
EggNOG OGsKOG2054@1,KOG2054@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929701.844209-CDS-H-elongata_contig119824:269..4731622929701.844209-CDS-H-elongata_contig119824:269..473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119824 270..473 +
1691679124.590876-CDS-H-elongata_contig119824:269..4731691679124.590876-CDS-H-elongata_contig119824:269..473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119824 270..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119824.1528.1prot_H-elongata_contig119824.1528.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119824 270..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119824.1528.1

>prot_H-elongata_contig119824.1528.1 ID=prot_H-elongata_contig119824.1528.1|Name=mRNA_H-elongata_contig119824.1528.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
DGFDIAGSFLLRSLAKPSLNVDLSLRIPSKCLVPRDSLNHRYLDKRALYA
GHLAAAAMDKEGRLGKLI
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mRNA from alignment at H-elongata_contig119824:270..473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119824.1528.1 ID=mRNA_H-elongata_contig119824.1528.1|Name=mRNA_H-elongata_contig119824.1528.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig119824:270..473+ (Himanthalia elongata Himel1 dioecious)
GACGGGTTTGACATCGCGGGAAGCTTTCTTCTTCGGTCCTTGGCGAAGCC
GAGCCTCAACGTCGACCTCTCCCTGCGCATCCCGTCAAAGTGCCTTGTGC
CCCGAGATTCCCTGAACCACCGATACCTTGACAAGAGGGCTCTCTACGCG
GGTCACCTGGCGGCTGCTGCCATGGATAAGGAAGGACGGCTCGGCAAGCT
GATT
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Coding sequence (CDS) from alignment at H-elongata_contig119824:270..473+

>mRNA_H-elongata_contig119824.1528.1 ID=mRNA_H-elongata_contig119824.1528.1|Name=mRNA_H-elongata_contig119824.1528.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig119824:270..473+ (Himanthalia elongata Himel1 dioecious)
GACGGGTTTGACATCGCGGGAAGCTTTCTTCTTCGGTCCTTGGCGAAGCC
GAGCCTCAACGTCGACCTCTCCCTGCGCATCCCGTCAAAGTGCCTTGTGC
CCCGAGATTCCCTGAACCACCGATACCTTGACAAGAGGGCTCTCTACGCG
GGTCACCTGGCGGCTGCTGCCATGGATAAGGAAGGACGGCTCGGCAAGCT
GATTGACGGGTTTGACATCGCGGGAAGCTTTCTTCTTCGGTCCTTGGCGA
AGCCGAGCCTCAACGTCGACCTCTCCCTGCGCATCCCGTCAAAGTGCCTT
GTGCCCCGAGATTCCCTGAACCACCGATACCTTGACAAGAGGGCTCTCTA
CGCGGGTCACCTGGCGGCTGCTGCCATGGATAAGGAAGGACGGCTCGGCA
AGCTGATT
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