mRNA_H-elongata_contig75866.15272.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75866.15272.1
Unique NamemRNA_H-elongata_contig75866.15272.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75866.15272.1 vs. uniprot
Match: D7FH27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH27_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 4.770e-78
Identity = 117/140 (83.57%), Postives = 128/140 (91.43%), Query Frame = 1 
Query:   19 QGDPKRAASWFPLVGKCYDSLEDVINNWEKYTLRQDGDAIRRMIGTVGVSSPLSSLRKAFVSIRDAEEESQGDVDVMAYVEAYMEVLTALGDAENDLYSANFADYAGGGGTTGSQFIAKANKSLKIAEARFKEVNGILGI 438
            +G+PK AASWFPL+ KCY SLEDV+ NWEKYT RQDGDAIRR+IGT+GVSSPLSS+RKAF SIRDAEE SQGD+DV+ YVEAYMEVLTALGDAENDLYSANFADY+GGGGT GSQFIAKANKSLKIA+  FKEVN ILGI
Sbjct:  124 EGNPKEAASWFPLLAKCYQSLEDVLENWEKYTARQDGDAIRRLIGTIGVSSPLSSIRKAFTSIRDAEEASQGDIDVIEYVEAYMEVLTALGDAENDLYSANFADYSGGGGTKGSQFIAKANKSLKIAKDEFKEVNKILGI 263
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BLAST of mRNA_H-elongata_contig75866.15272.1 vs. uniprot
Match: A0A835ZH00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH00_9STRA)

HSP 1 Score: 143 bits (361), Expect = 4.540e-41
Identity = 73/135 (54.07%), Postives = 99/135 (73.33%), Query Frame = 1 
Query:   22 GDPKRAASWFPLVGKCYDSLEDVINNWEKYTLR--QDGDAIRRMIGTVGVSSPLSSLRKAFVSIRDAEEESQGDVDVMAYVEAYMEVLTALGDAENDLYSANFADYAGGGGTTGSQFIAKANKSLKIAEARFKEV 420
            GDPK AASWFPL+   Y +L+D++ NW+        DGDA+RR IGTVGVSSPLS+++K F +IRD+E+ ++ ++D+  +VEAY  VLT L DAENDLYSANFAD++GGG   G+ FI  A KS+  A+  F+E+
Sbjct:   18 GDPKVAASWFPLLKLQYAALKDLLANWDAVAPAGSTDGDAVRRKIGTVGVSSPLSAVKKTFSAIRDSEDVAE-EIDLADFVEAYQAVLTDLSDAENDLYSANFADFSGGGQLKGTNFIKAAKKSIAAAKLNFEEI 151
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BLAST of mRNA_H-elongata_contig75866.15272.1 vs. uniprot
Match: A0A7S2UXU3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXU3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 9.680e-28
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 1 
Query:   22 GDPKRAASWFPLVGKCYDSLEDVINNWEKYTLRQDGDAIRRMIGTVGVSSPLSSLRKAFVSIRDAEEESQGDVDVMAYVEAYMEVLTALGDAENDLYSANFADYAGGGGTTGSQFIAKANKSLKIAEARFKEVNGIL 432
            G+PK   +W P V   Y  LE ++ NW++   + +GD +RR +GTVGVSS L+S +KA   +RDA +      D + + E   EV+T LGDAEND YSANFA+++GGG    +QFI KA   +K A   +K V G++
Sbjct:  103 GNPKSYKTWAPQVRDGYKRLEIMVENWDEIAAKDNGDEMRRFLGTVGVSSSLTSFKKALYGVRDAVD-LPSSFDEIEWAEKAEEVVTCLGDAENDFYSANFAEFSGGGQLKSAQFIKKARPFVKKA---YKIVGGMV 235
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BLAST of mRNA_H-elongata_contig75866.15272.1 vs. uniprot
Match: A0A7S4DIQ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIQ5_HETAK)

HSP 1 Score: 107 bits (266), Expect = 7.140e-26
Identity = 57/135 (42.22%), Postives = 85/135 (62.96%), Query Frame = 1 
Query:   22 GDPKRAASWFPLVGKCYDSLEDVINNWEKYTLRQDGDAIRRMIGTVGVSSPLS--SLRKAFVSIRDAEEESQGDVDVMAYVEAYMEVLTALGDAENDLYSANFADYAGGGGTTGSQFIAKANKSLKIAEARFKEV 420
            G P   ++W   + +    L +V+ NW+   LR +GD +R+ IGTVG  S L+  SL++AF+ + +A++     VD+  Y E Y EVLTAL DAEN+ YSANFAD++GGG    SQFI ++ K + +A+   KE+
Sbjct:   95 GPPASFSTWLAQLEEGEKILVNVLQNWKDLELRDNGDEVRKFIGTVGPVSALNPVSLKRAFLKLAEADDFPDY-VDLDEYAEKYEEVLTALADAENEAYSANFADFSGGGQLKSSQFIKRSQKRIAVAQRALKEI 228
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BLAST of mRNA_H-elongata_contig75866.15272.1 vs. uniprot
Match: A0A5J4Z903_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z903_PORPP)

HSP 1 Score: 70.1 bits (170), Expect = 8.070e-12
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = 1 
Query:   70 YDSLEDVINNWEKYTLRQDGDAIRRMIGTVGVSSPLSSLRKAFVSIRDA--EEESQGDVDVMAYVEAYMEVLTALGDAENDLYSANFADYAGGGGTTGSQFIAKANKSLKIAEARFKEVNGIL 432
            YD + D+  NW + T   DGD +RR +GTVG SSPL +++KAF+++  +  E +   D D+    E Y  VL  +   +  LYS NF++       T  + I    K+L      +KEV  IL
Sbjct:  104 YDVMLDLERNWTERTKAFDGDIVRRYLGTVGKSSPLFNIKKAFMAVWKSLSERDDVSDADLEELNEKYNLVLDGISGVDFQLYSVNFSELR----PTKEKLIEDGKKALDKTVGIYKEVLAIL 222
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BLAST of mRNA_H-elongata_contig75866.15272.1 vs. uniprot
Match: A0A2V3IQN4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQN4_9FLOR)

HSP 1 Score: 66.6 bits (161), Expect = 4.420e-11
Identity = 34/108 (31.48%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:   10 ISRQGDPKRAASWFPLVGKCYDSLEDVINNWEKYTLRQDGDAIRRMIGTVGVSSPLSSLRKAFVSIRDAEEESQGDVDVMAYVEA-YMEVLTALGDAENDLYSANFAD 330
             S  GDPK+  ++ P +   Y +L  +  +WE  T   DGD +RR++GTVGV SPL ++RK  +       ++  D +++  +E  + +V+  +   +  LYSA+F +
Sbjct:   10 FSTTGDPKKLETYLPQIEAGYQALLGLDRDWEAKTKDFDGDVVRRVLGTVGVKSPLFNIRKPLLKSWQIVADTSTDDELIERLETEWNDVINGISSIDFQLYSASFTE 117
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BLAST of mRNA_H-elongata_contig75866.15272.1 vs. uniprot
Match: A0A813JFT0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JFT0_POLGL)

HSP 1 Score: 51.2 bits (121), Expect = 8.780e-5
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:   55 LVGKCYDSLEDVINNWEKYTLRQDGDAIRRMIGTVGVSSPLSSLRKAFVSIRDAEEESQGDVDVMAYVEAYMEVLTALGDAENDLYSANFADYAG 339
            ++ +   +L D + NW +  +  DGD+IRR++GTVG +SP+ +L +A  S+      +  + D++   EA   V   L  A+   YSANFAD +G
Sbjct:  124 ILSRSEAALADALKNWSR--VAADGDSIRRVLGTVGATSPVYALPRAMRSL------TAENFDILEQTEA---VEFHLRQADFLAYSANFADSSG 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75866.15272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FH27_ECTSI4.770e-7883.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZH00_9STRA4.540e-4154.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UXU3_9STRA9.680e-2843.80Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4DIQ5_HETAK7.140e-2642.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5J4Z903_PORPP8.070e-1234.96Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A2V3IQN4_9FLOR4.420e-1131.48Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A813JFT0_POLGL8.780e-534.74Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75866contigH-elongata_contig75866:880..2790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_003260.1
Exons4
Model size441
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75866.15272.1prot_H-elongata_contig75866.15272.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75866 880..2790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931164.1590958-CDS-H-elongata_contig75866:879..9641622931164.1590958-CDS-H-elongata_contig75866:879..964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75866 880..964 +
1691679724.4418275-CDS-H-elongata_contig75866:879..9641691679724.4418275-CDS-H-elongata_contig75866:879..964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75866 880..964 +
1622931164.17658-CDS-H-elongata_contig75866:1395..15381622931164.17658-CDS-H-elongata_contig75866:1395..1538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75866 1396..1538 +
1691679724.4498923-CDS-H-elongata_contig75866:1395..15381691679724.4498923-CDS-H-elongata_contig75866:1395..1538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75866 1396..1538 +
1622931164.1929693-CDS-H-elongata_contig75866:2128..22541622931164.1929693-CDS-H-elongata_contig75866:2128..2254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75866 2129..2254 +
1691679724.4619093-CDS-H-elongata_contig75866:2128..22541691679724.4619093-CDS-H-elongata_contig75866:2128..2254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75866 2129..2254 +
1622931164.2076359-CDS-H-elongata_contig75866:2703..27901622931164.2076359-CDS-H-elongata_contig75866:2703..2790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75866 2704..2790 +
1691679724.472005-CDS-H-elongata_contig75866:2703..27901691679724.472005-CDS-H-elongata_contig75866:2703..2790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75866 2704..2790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75866.15272.1

>prot_H-elongata_contig75866.15272.1 ID=prot_H-elongata_contig75866.15272.1|Name=mRNA_H-elongata_contig75866.15272.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
MTYISRQGDPKRAASWFPLVGKCYDSLEDVINNWEKYTLRQDGDAIRRMI
GTVGVSSPLSSLRKAFVSIRDAEEESQGDVDVMAYVEAYMEVLTALGDAE
NDLYSANFADYAGGGGTTGSQFIAKANKSLKIAEARFKEVNGILGI*
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mRNA from alignment at H-elongata_contig75866:880..2790+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75866.15272.1 ID=mRNA_H-elongata_contig75866.15272.1|Name=mRNA_H-elongata_contig75866.15272.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1911bp|location=Sequence derived from alignment at H-elongata_contig75866:880..2790+ (Himanthalia elongata Himel1 dioecious)
ATGACCTATATTTCCCGTCAGGGCGACCCCAAGAGGGCTGCTTCTTGGTT
TCCTCTTGTGGGCAAGTGCTACGATTCCCTCGAAGGTAACGAGTTTTTTT
GACACACCTGATTTTAAACCCTTGCGGTTGTAGTGTCTCTTACGAGGATA
GACCAACACCGCGCTTTTGGCGGGCGACGATGACCGCGTGAGGGATCGGG
AGTGTCGAGACCGTCAAACACCGTCAAGCTTTGCGGCCCCTCGCTCTACG
AGAGAGAACTGCGAGCTGCTCTCAGCCGGGGTGGTTGTGAAGTGCGCCGC
GTTTCGCTCGACAATGCGAGAGCGTTTTTTATTCGAGCCGATTGCCTTGG
GGCATTATCTTACGTCCGACGGGGGTCAGTGTTGCAGCTGTCGGCGTATT
GGACTCCTTCGGCGGCGTGGCGAACTGTTTTGAGCGGCATCCACCATCCG
TGACAGTGCGATCATTTCGGCTGCTGTACTTGTTGTCACTTTTCCCGCCC
TCCTCTCCCGCGACAGACGTTATCAATAACTGGGAGAAGTACACGCTGAG
GCAAGACGGGGACGCCATCCGCAGGATGATCGGGACGGTCGGGGTGTCGA
GCCCACTCTCTTCGTTGCGAAAGGCGTTCGTCAGCATCCGAGACGCAGAA
GAGGAATCGGTGAGAATTGGTGGTACCTTCCAACGAACATTACTTGTGCT
TGCCTATGCCGGCATGGGATGGGATGGGATGGAATGGAACCTTCAGCGGC
AGAAGTCGATAAAAAGGCGTTCTCTCCCTATGTCCTAGGCACGGAACCCT
ATCATCGGAGATATATATATATATTACTTTTAAAGTATATAATGGGAGCT
TCGCAACGTCGTAGTAAGAGAGTTATACAAAGTGGTTAGCGAGGTGAATC
GCCCAACGCGCTCCCAAGGGAAAAACGAATCCCCGAGAGTGACACCAGTC
GTCGCCCATCGGAGCCGCTTCGTCACAGGAGATATGATTCTCAAGCGCAT
TGAGACAGAGCATTATTAGAGAGCATTAAGCGGGTAAAGGGGGGCGTGAG
GGTAGCTCTCTCCATGGTTGGTTCCGGTCGACGAGCGATTGATTGCAATT
GCAATGTCGACGAGGGGTGACACGGACGCCGGTTTCCATTTACGCGAGTG
AAAAAAAAAATATATATATATATATTTCGTGTGCGTGGATGATACACGCA
GCATCAGTTTTCCCTCGTATACTGTGTCGCCTCGATTGTGCTCCCCCAGC
AAGGAGACGTGGACGTGATGGCGTACGTGGAAGCGTACATGGAGGTCCTC
ACCGCGCTTGGGGACGCCGAGAACGACCTGTACTCCGCCAATTTTGCGGA
CTACGCGGGCGGTGGAGGCACGACTGTGAGAACCGAGACTCTTTCTCCCC
CACCCGCCGTCATTTCACATGGCACGGGGAACACAGCCGTTGTATTCTTT
ACGTCAAAAGGTCGAGCTGTTCGCGAGATTACTACCGTGACCAGGGTTTG
ATTTTTCCCTCTTTTGCTTGCGTCAGATGTCAGATAACAAACAAGACTAA
GACTACGACTAGTATTAATATGACCAGCGACACTAATAATATAATAATAT
ATATATATATATCGCTTGAGAATTTCGACCGGTCGCCCCAGCGCGGGTTG
TACGGAAGGAAGGCCTGGGCTCATGGTCGAATGCTCCATTTTTTTAGGAG
AAATAACACACTACGTTTATTATATATATATAGTATTACTACTACAACCA
CCATGTATGATGTCCAAGCGCATAACAATGCCGCGTGCTTATTTTTTTCC
CCCCGACTCTGGATGTTTTGCCAGGGGAGTCAATTTATTGCCAAGGCGAA
CAAGAGCCTCAAGATTGCCGAGGCTCGTTTCAAGGAGGTCAACGGCATCC
TGGGCATATGA
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Coding sequence (CDS) from alignment at H-elongata_contig75866:880..2790+

>mRNA_H-elongata_contig75866.15272.1 ID=mRNA_H-elongata_contig75866.15272.1|Name=mRNA_H-elongata_contig75866.15272.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig75866:880..2790+ (Himanthalia elongata Himel1 dioecious)
ATGACCTATATTTCCCGTCAGGGCGACCCCAAGAGGGCTGCTTCTTGGTT
TCCTCTTGTGGGCAAGTGCTACGATTCCCTCGAAGATGACCTATATTTCC
CGTCAGGGCGACCCCAAGAGGGCTGCTTCTTGGTTTCCTCTTGTGGGCAA
GTGCTACGATTCCCTCGAAGACGTTATCAATAACTGGGAGAAGTACACGC
TGAGGCAAGACGGGGACGCCATCCGCAGGATGATCGGGACGGTCGGGGTG
TCGAGCCCACTCTCTTCGTTGCGAAAGGCGTTCGTCAGCATCCGAGACGC
AGAAGAGGAATCGACGTTATCAATAACTGGGAGAAGTACACGCTGAGGCA
AGACGGGGACGCCATCCGCAGGATGATCGGGACGGTCGGGGTGTCGAGCC
CACTCTCTTCGTTGCGAAAGGCGTTCGTCAGCATCCGAGACGCAGAAGAG
GAATCGCAAGGAGACGTGGACGTGATGGCGTACGTGGAAGCGTACATGGA
GGTCCTCACCGCGCTTGGGGACGCCGAGAACGACCTGTACTCCGCCAATT
TTGCGGACTACGCGGGCGGTGGAGGCACGACTCAAGGAGACGTGGACGTG
ATGGCGTACGTGGAAGCGTACATGGAGGTCCTCACCGCGCTTGGGGACGC
CGAGAACGACCTGTACTCCGCCAATTTTGCGGACTACGCGGGCGGTGGAG
GCACGACTGGGAGTCAATTTATTGCCAAGGCGAACAAGAGCCTCAAGATT
GCCGAGGCTCGTTTCAAGGAGGTCAACGGCATCCTGGGCATATGAGGGAG
TCAATTTATTGCCAAGGCGAACAAGAGCCTCAAGATTGCCGAGGCTCGTT
TCAAGGAGGTCAACGGCATCCTGGGCATATGA
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