mRNA_H-elongata_contig75742.15264.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75742.15264.1
Unique NamemRNA_H-elongata_contig75742.15264.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75742.15264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75742contigH-elongata_contig75742:1038..2580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionDomain of unknown function DUF1990
Ec32 orthologEc-12_008030.1
Exons2
Model size1175
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75742.15264.1prot_H-elongata_contig75742.15264.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75742 1154..1878 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.1847048-UTR-H-elongata_contig75742:1037..11531622931163.1847048-UTR-H-elongata_contig75742:1037..1153Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75742 1038..1153 +
1691679724.1216128-UTR-H-elongata_contig75742:1037..11531691679724.1216128-UTR-H-elongata_contig75742:1037..1153Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75742 1038..1153 +
1622931163.2369528-UTR-H-elongata_contig75742:1878..25801622931163.2369528-UTR-H-elongata_contig75742:1878..2580Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75742 1879..2580 +
1691679724.159491-UTR-H-elongata_contig75742:1878..25801691679724.159491-UTR-H-elongata_contig75742:1878..2580Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75742 1879..2580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.2032905-CDS-H-elongata_contig75742:1153..12921622931163.2032905-CDS-H-elongata_contig75742:1153..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75742 1154..1292 +
1691679724.1368446-CDS-H-elongata_contig75742:1153..12921691679724.1368446-CDS-H-elongata_contig75742:1153..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75742 1154..1292 +
1622931163.2211819-CDS-H-elongata_contig75742:1660..18781622931163.2211819-CDS-H-elongata_contig75742:1660..1878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75742 1661..1878 +
1691679724.1481502-CDS-H-elongata_contig75742:1660..18781691679724.1481502-CDS-H-elongata_contig75742:1660..1878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75742 1661..1878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75742.15264.1

>prot_H-elongata_contig75742.15264.1 ID=prot_H-elongata_contig75742.15264.1|Name=mRNA_H-elongata_contig75742.15264.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MLTLKWFAFASLCLAAVHTLEAKITGHTTWFPSLRLLFKHSDHVLAEYLS
EVSGRAFNHDHVGVTALAPPVHHQPTVTAVPHGYRVNARRQLLGTGQNVR
ECTAGAHRKSCDPSSPII*
back to top

mRNA from alignment at H-elongata_contig75742:1038..2580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75742.15264.1 ID=mRNA_H-elongata_contig75742.15264.1|Name=mRNA_H-elongata_contig75742.15264.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1543bp|location=Sequence derived from alignment at H-elongata_contig75742:1038..2580+ (Himanthalia elongata Himel1 dioecious)
GGATAATCCAAAAGCCAGGAGGCCCTTTCTTCTTTCTTGCCAAGTCGAGG
TGTTTTATTTTTAGAGACCTGGCTGACGTTCCTCGTGTAAAACGTCTCAT
TCCAAGCGATCCCGAAATGCTCACATTAAAGTGGTTCGCGTTCGCTTCCC
TATGTTTAGCGGCAGTTCATACATTGGAAGCCAAGATTACCGGGCATACT
ACATGGTTCCCGAGCTTGCGTCTACTGTTCAAACACTCGGACCACGTACT
CGCAGGTACGACGAGATCTAAAATGGAAGGAATATCATGGACACCCTTTC
ACAGCCTTACTTCGAAATGTTCATTACAGACAGTACTAGATAACCACGAG
ATTGATGCTATGAGACATCAAGGGTCATCGATGGGTATCATCTGAGACGC
GAATGATTATCGACGCCACCCTTCTGTCAGATGATGAAATTGTAATTGTC
TATCTCGCAGACAGCCAAGTTTGGCATACACAGCATAACCGCAGCACTTA
GATGCCTCAAGGACTTATCGGTCTTAGGTAGGAAAATGGTCGAGGAAGTA
CTGTATCGTTCGAGATTTTACGATGCAGCACTGGCGCCCTTGTAATACAA
AACCTATTTCTCGTCCTCTTCAGAGTACTTGTCGGAGGTATCTGGCAGAG
CTTTCAACCATGACCACGTTGGAGTCACGGCTCTTGCTCCGCCGGTTCAT
CATCAGCCCACTGTAACTGCCGTCCCCCATGGCTACAGGGTAAATGCACG
TCGGCAGCTGCTAGGAACAGGCCAGAATGTAAGAGAATGCACAGCTGGAG
CACACAGAAAGAGTTGTGACCCTTCCAGTCCCATAATCTGACGAGGCCCA
AAATCACCCGTCTTAAGGATATAATGCAATTCTTAGAATGCTGTGGTTGC
GCTAGAGGTTGCGTTTGGACAGACTAGCAGGCGCTTTGGTAGCCCTAATA
ATGTTGACTCGATCACGATTTTGGCGACGATACTGGTTGCAGTAGAGTAT
AGTCAGGGATGATATTGTTTTAGGTATTTTTATCTCCCGTCCGTGTTAAG
CGTAGTGATATGACATTGCATAGTGTCGTCATTACGTATAGTAGGGTAAG
GTCAACTGGATTTGGTTGCCTCCTGCTTGTGGTCAGCTGAACAGGGAAAA
TGTAGCGGTATTCCGGCGCGGTTGCGTAAGGAACGAGAGTAGGATAGGTC
AATCCAATGTTGCTTCCCATTAGGAAGGGTTATTTGCAAACTGGCGTTGC
GCCCCATCACGTGTCACGTCGGTTTGCGCGGCCATGCTCAAAGGTAGTAG
GTAGTAATGTGCACATTCGAACCTGACGATAGTTGGTCCCTTGGATTGCA
ACTCTCACGGGGCTAAGAAGACGTGGATGTTCGGAGGGTTGGAATGAGTT
TCAGATTTCTAAGATAAATTGAGAAAAGGGAAAATGTTTTTCTCCCTGCC
CCCGTTCGCGCCTGAGAATTTAGTCCCATGAGACAGGTTCGGGAGTTCCA
TCCCGTGTCAGCCTCCTGATTATCTCAACCCAGCTTGAATATG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig75742:1038..2580+

>mRNA_H-elongata_contig75742.15264.1 ID=mRNA_H-elongata_contig75742.15264.1|Name=mRNA_H-elongata_contig75742.15264.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig75742:1038..2580+ (Himanthalia elongata Himel1 dioecious)
ATGCTCACATTAAAGTGGTTCGCGTTCGCTTCCCTATGTTTAGCGGCAGT
TCATACATTGGAAGCCAAGATTACCGGGCATACTACATGGTTCCCGAGCT
TGCGTCTACTGTTCAAACACTCGGACCACGTACTCGCAGATGCTCACATT
AAAGTGGTTCGCGTTCGCTTCCCTATGTTTAGCGGCAGTTCATACATTGG
AAGCCAAGATTACCGGGCATACTACATGGTTCCCGAGCTTGCGTCTACTG
TTCAAACACTCGGACCACGTACTCGCAGAGTACTTGTCGGAGGTATCTGG
CAGAGCTTTCAACCATGACCACGTTGGAGTCACGGCTCTTGCTCCGCCGG
TTCATCATCAGCCCACTGTAACTGCCGTCCCCCATGGCTACAGGGTAAAT
GCACGTCGGCAGCTGCTAGGAACAGGCCAGAATGTAAGAGAATGCACAGC
TGGAGCACACAGAAAGAGTTGTGACCCTTCCAGTCCCATAATCTGAAGTA
CTTGTCGGAGGTATCTGGCAGAGCTTTCAACCATGACCACGTTGGAGTCA
CGGCTCTTGCTCCGCCGGTTCATCATCAGCCCACTGTAACTGCCGTCCCC
CATGGCTACAGGGTAAATGCACGTCGGCAGCTGCTAGGAACAGGCCAGAA
TGTAAGAGAATGCACAGCTGGAGCACACAGAAAGAGTTGTGACCCTTCCA
GTCCCATAATCTGA
back to top