mRNA_H-elongata_contig75737.15263.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75737.15263.1
Unique NamemRNA_H-elongata_contig75737.15263.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75737.15263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75737contigH-elongata_contig75737:2064..2808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size480
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75737.15263.1prot_H-elongata_contig75737.15263.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75737 2064..2802 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.0845504-CDS-H-elongata_contig75737:2063..21891622931163.0845504-CDS-H-elongata_contig75737:2063..2189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75737 2064..2189 -
1691679724.0801628-CDS-H-elongata_contig75737:2063..21891691679724.0801628-CDS-H-elongata_contig75737:2063..2189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75737 2064..2189 -
1622931163.112383-CDS-H-elongata_contig75737:2454..28021622931163.112383-CDS-H-elongata_contig75737:2454..2802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75737 2455..2802 -
1691679724.096945-CDS-H-elongata_contig75737:2454..28021691679724.096945-CDS-H-elongata_contig75737:2454..2802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75737 2455..2802 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.1291783-UTR-H-elongata_contig75737:2802..28081622931163.1291783-UTR-H-elongata_contig75737:2802..2808Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75737 2803..2808 -
1691679724.107576-UTR-H-elongata_contig75737:2802..28081691679724.107576-UTR-H-elongata_contig75737:2802..2808Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75737 2803..2808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75737.15263.1

>prot_H-elongata_contig75737.15263.1 ID=prot_H-elongata_contig75737.15263.1|Name=mRNA_H-elongata_contig75737.15263.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
MAADANAARKRYSVERLVMSERQQRATVRDGVCGMGQNIELPSSSSLPSP
PGDRRTESAVSHQRGGGRSRHDAGESSSCLFPSSVPTLRSRDDEEDKDEG
EEHASIHMEAEEPPMPEGIEFEWDDVKEEEEEGGAQSQSGSEDLLLPEVG
GVGYERT*
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mRNA from alignment at H-elongata_contig75737:2064..2808-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75737.15263.1 ID=mRNA_H-elongata_contig75737.15263.1|Name=mRNA_H-elongata_contig75737.15263.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=745bp|location=Sequence derived from alignment at H-elongata_contig75737:2064..2808- (Himanthalia elongata Himel1 dioecious)
CAGGAAATGGCCGCGGATGCGAATGCGGCCAGGAAACGCTACTCTGTGGA
ACGCTTGGTGATGTCGGAGCGGCAGCAGCGGGCAACCGTGCGGGATGGGG
TCTGTGGGATGGGGCAGAATATCGAGTTACCGTCATCTTCGTCGTTGCCG
TCGCCGCCGGGCGATAGACGGACAGAGAGCGCCGTGAGTCACCAACGGGG
GGGTGGAAGAAGCCGACACGACGCCGGCGAGAGCAGCTCATGCTTGTTTC
CGTCAAGCGTGCCTACCCTTAGGTCTCGTGACGACGAAGAGGACAAGGAC
GAAGGAGAGGAACACGCCTCCATACATATGGAGGCAGAGGAACCGCCTAT
GCCGGTAAAACTTATTACTGCTTTGTTTTTTTTAAGTTGGGTTGCTACGG
TCAGTGTCCGCGGGCGGTTGCTTCTCCTTACCGCCGTCGCGCGAGAGTTC
CCCTCTGGGTTCGACTCGTGTAAAGCGACGAAGAGACTCTTTATGTGACT
GCTAAAACGCGCGCGCGGGGTGTGTGCTCTGATGCACGTATTTTGCTTGT
GCCCGTCTCCGCCGACCGTGCCTGATGTGTATCCTGGTTCCATCGGTTTT
AATACTTCCCTTCGCGCAGGAGGGGATAGAGTTTGAGTGGGACGATGTAA
AAGAAGAGGAGGAGGAGGGTGGGGCTCAATCCCAATCGGGAAGCGAGGAC
CTGTTGTTACCAGAGGTGGGTGGGGTGGGGTATGAGAGAACATGA
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Coding sequence (CDS) from alignment at H-elongata_contig75737:2064..2808-

>mRNA_H-elongata_contig75737.15263.1 ID=mRNA_H-elongata_contig75737.15263.1|Name=mRNA_H-elongata_contig75737.15263.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig75737:2064..2808- (Himanthalia elongata Himel1 dioecious)
ATGGCCGCGGATGCGAATGCGGCCAGGAAACGCTACTCTGTGGAACGCTT
GGTGATGTCGGAGCGGCAGCAGCGGGCAACCGTGCGGGATGGGGTCTGTG
GGATGGGGCAGAATATCGAGTTACCGTCATCTTCGTCGTTGCCGTCGCCG
CCGGGCGATAGACGGACAGAGAGCGCCGTGAGTCACCAACGGGGGGGTGG
AAGAAGCCGACACGACGCCGGCGAGAGCAGCTCATGCTTGTTTCCGTCAA
GCGTGCCTACCCTTAGGTCTCGTGACGACGAAGAGGACAAGGACGAAGGA
GAGGAACACGCCTCCATACATATGGAGGCAGAGGAACCGCCTATGCCGAT
GGCCGCGGATGCGAATGCGGCCAGGAAACGCTACTCTGTGGAACGCTTGG
TGATGTCGGAGCGGCAGCAGCGGGCAACCGTGCGGGATGGGGTCTGTGGG
ATGGGGCAGAATATCGAGTTACCGTCATCTTCGTCGTTGCCGTCGCCGCC
GGGCGATAGACGGACAGAGAGCGCCGTGAGTCACCAACGGGGGGGTGGAA
GAAGCCGACACGACGCCGGCGAGAGCAGCTCATGCTTGTTTCCGTCAAGC
GTGCCTACCCTTAGGTCTCGTGACGACGAAGAGGACAAGGACGAAGGAGA
GGAACACGCCTCCATACATATGGAGGCAGAGGAACCGCCTATGCCGGAGG
GGATAGAGTTTGAGTGGGACGATGTAAAAGAAGAGGAGGAGGAGGGTGGG
GCTCAATCCCAATCGGGAAGCGAGGACCTGTTGTTACCAGAGGTGGGTGG
GGTGGGGTATGAGAGAACATGAGAGGGGATAGAGTTTGAGTGGGACGATG
TAAAAGAAGAGGAGGAGGAGGGTGGGGCTCAATCCCAATCGGGAAGCGAG
GACCTGTTGTTACCAGAGGTGGGTGGGGTGGGGTATGAGAGAACATGA
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