prot_H-elongata_contig75686.15259.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig75686.15259.1
Unique Nameprot_H-elongata_contig75686.15259.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length481
Homology
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A6H5K111_9PHAE (TrmE-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K111_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 8.040e-87
Identity = 171/229 (74.67%), Postives = 185/229 (80.79%), Query Frame = 0
Query:  269 SEDHTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTR------------SPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLG----VRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 481
            S + TIFAL+TGN+GPAGVAVVR+SGP SAQVL+ALT             S GR     XXXXXXXXXX     GR+ PP PA RRAVVRRLYDPA+GDLLDEALVLWMPGPRSFTGEDT+ELHTHGSRAVINGVLDAL ++        VR+AERGEFTQRAYGNGRMDLTGVEGLADL+AADTAAQRKQ AL+QMGGALR+ YE WR QLK CLAHAEAVIDFGDDE
Sbjct:   29 SSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSATTLSSATAAEASAGRDAGVAXXXXXXXXXXXX-XAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRSFTGEDTVELHTHGSRAVINGVLDALAAMGAASGLRRVRLAERGEFTQRAYGNGRMDLTGVEGLADLVAADTAAQRKQ-ALKQMGGALRDMYEEWRHQLKGCLAHAEAVIDFGDDE 255          
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: D8LG51_ECTSI (TrmE, organellal GTPase involved in tRNA modification n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG51_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 1.070e-84
Identity = 162/228 (71.05%), Postives = 174/228 (76.32%), Query Frame = 0
Query:  269 SEDHTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREG-----------GRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLG----VRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 481
            S + TIFAL+TGN+GPAGVAVVR+SGP SAQVL+ALT S   L S                            GR+ PP PA RRAVVRRLYDPA+GDLLDEALVLWMPGPRSFTGEDT+ELHTHGSRAVINGVLDAL  +        VR+AERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQ AL+QMGGALR+ YE WR QLK CLAHAEAVIDFGDDE
Sbjct:  193 SSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALT-SAANLSSVTAAEASAGGDAGVAASAAPAVVNGGGAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRSFTGEDTVELHTHGSRAVINGVLDALAGMGAASGMRRVRLAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQ-ALKQMGGALRDMYEEWRHQLKGCLAHAEAVIDFGDDE 418          
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A836CK05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK05_9STRA)

HSP 1 Score: 258 bits (658), Expect = 5.460e-77
Identity = 140/209 (66.99%), Postives = 156/209 (74.64%), Query Frame = 0
Query:  273 TIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLGVRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 481
            TIFALS+G +G AGVAV+RVSGP +   L  L  +PGR                          +P  RRA VRRLYDP  GDLLDEALVLWMPGPRSFTGEDT ELHTHGSRAV+ GVL ALG++   G+R AERGEFTQRAYGNGRMDLT VEGLADLIAADTA QR+Q ALRQMGGAL++KYE+WRE+L +CLAH EAVIDFGDDE
Sbjct:    5 TIFALSSGPAGQAGVAVIRVSGPAAGDALHTLITAPGRHAK-----------------------MPEARRAAVRRLYDPVKGDLLDEALVLWMPGPRSFTGEDTTELHTHGSRAVVGGVLGALGTIP--GLRPAERGEFTQRAYGNGRMDLTEVEGLADLIAADTAEQRRQ-ALRQMGGALKDKYESWREELTKCLAHTEAVIDFGDDE 187          
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A4D9CTT5_9STRA (TrmE-type G domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTT5_9STRA)

HSP 1 Score: 213 bits (542), Expect = 5.320e-60
Identity = 110/158 (69.62%), Postives = 126/158 (79.75%), Query Frame = 0
Query:  327 DREGGRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLG---VRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 481
            D   G    P PAPR A +R+LY P   + LD+A+VLW+PGPRSFTGEDT+ELH HGSRAV+ GV +AL +L K G   VR+AE GEFT+RA+ NGRMDLT VEGLADLIAADTAAQRKQ AL+QMGGALR+ YE WRE+LK CLAH EAVIDFGDDE
Sbjct:    2 DSHSGHSSAPFPAPRMASLRKLYSPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGKARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQ-ALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDE 158          
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A7S4DLF8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DLF8_HETAK)

HSP 1 Score: 204 bits (520), Expect = 6.090e-59
Identity = 114/203 (56.16%), Postives = 143/203 (70.44%), Query Frame = 0
Query:  273 TIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLGV---RMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAE 472
            TI+ALS+G+   AGVA++R+SGPR+ +VLE LT  P                  D     KG  +P PR A +R+++DP + +LLDE+LVLW PGP+SFTGEDT+ELH HGSRAV++GVL+ LG L    V   R+A+RGEFTQRA+ NGR+DLT VEGLADLIAADTAAQR+Q AL+QMGG+L   Y  WR +L  CLAH E
Sbjct:   96 TIYALSSGHGVVAGVAIIRISGPRAQEVLEQLTAPPP-----------------DTHQFAKGK-IPTPRMACMRKIFDPETKELLDESLVLWFPGPKSFTGEDTVELHVHGSRAVVSGVLEGLGKLSPSSVGAVRVADRGEFTQRAFRNGRLDLTEVEGLADLIAADTAAQRRQ-ALKQMGGSLSALYLDWRARLAACLAHTE 279          
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A7S3H4J6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4J6_9STRA)

HSP 1 Score: 205 bits (521), Expect = 5.300e-58
Identity = 114/213 (53.52%), Postives = 139/213 (65.26%), Query Frame = 0
Query:  273 TIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDAL----GSLRKLGVRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 481
            TIFALS+G    +GVAVVR+SGP S   LE L   PG   SP                       P PR A ++ LY P + D+LD++L+LW PGPRSFTGED +ELH HGSRAVI GV +AL      L    +R A  GEFT+RA+ NG+MDLT VEGL+DL+ A+T+ QRKQ AL+QM G LR++YEAWR+ L  CLAH EAVIDFGDD+
Sbjct:   59 TIFALSSGPIAKSGVAVVRISGPSSLYCLERLAVKPGASTSPF---------------------APKPREATLKALYSPVTDDVLDQSLILWFPGPRSFTGEDVVELHVHGSRAVIKGVFEALEHLDDPLSGRAIRPAAPGEFTRRAFDNGKMDLTEVEGLSDLLDAETSEQRKQ-ALKQMEGHLRKQYEAWRDVLMSCLAHTEAVIDFGDDD 249          
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A7S0IYM9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IYM9_9EUKA)

HSP 1 Score: 194 bits (492), Expect = 1.780e-55
Identity = 117/212 (55.19%), Postives = 136/212 (64.15%), Query Frame = 0
Query:  275 FALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDP------ASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLGVRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDD 480
            FALS+G    AGV+V+RVSGP++   L  L  +PG   SP                      LP PRRAV+R L  P      A G+L+D ALVLW P PRSFTGEDT+ELHTHGSRAV+   L+ALG L   G+R+AE GEFT++A+ NGRMDLT VEGL DLI ADT  QRKQ AL QM G  R  YE WRE L  CLAH EA+IDFG+D
Sbjct:    1 FALSSGAGVRAGVSVIRVSGPQAGAAL--LQLAPGAKSSPE---------------------LPPPRRAVLRALLRPQTPAEDAHGELIDNALVLWFPAPRSFTGEDTLELHTHGSRAVVASTLEALGRLP--GLRLAEPGEFTRQAFSNGRMDLTEVEGLGDLINADTEEQRKQ-ALAQMEGVQRRVYEQWREALLVCLAHTEALIDFGED 186          
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A7S1TUE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUE7_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.110e-55
Identity = 117/217 (53.92%), Postives = 139/217 (64.06%), Query Frame = 0
Query:  273 TIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDPA-SGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLGV-------RMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 481
            TI+A+S+G    AGV V+RVSGP++   L  L  S                       G    P P PR A VRRL  P   G+ LDEALVLWMPGPRSFTG+D +ELH HGSRAV+ GVL AL +   + +       RMAE GEFT++A+ NGRMDL  VEGLADL+AADT+AQRKQ AL QM GAL  +Y  WR+ L +CLAHAEAV+DFGDDE
Sbjct:   26 TIYAVSSGQGVVAGVTVIRVSGPQAGPALRCLLGS-----------------------GDAEQPFPKPRYAAVRRLIAPGPGGEELDEALVLWMPGPRSFTGQDVVELHCHGSRAVVAGVLGALEATSDVLLSGSGDIMRMAEPGEFTRQAFSNGRMDLAQVEGLADLLAADTSAQRKQ-ALEQMKGALSTRYAEWRKSLVKCLAHAEAVLDFGDDE 218          
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A0G4EE61_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EE61_VITBC)

HSP 1 Score: 201 bits (510), Expect = 6.370e-54
Identity = 118/224 (52.68%), Postives = 144/224 (64.29%), Query Frame = 0
Query:  271 DHTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKL-------------GVRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 481
            D TI+ALS+G SG AGVAV+R+SGP S  +L+ LT  P                     G R   PLP PR+AV+RR+YDP  G+LLD+ LV+W P P SFTG+DT+ELH HGSRAVI GV +A   L+               G+R AERGE+T+RA+ NGR+DL  VEGLADLIAADT++QR QQA+RQM G L   YE WR +L   LA  EA IDFGDD+
Sbjct:   77 DDTIYALSSG-SGKAGVAVIRISGPLSPLILQLLTTDPSTRPCSSSSSNAIPY-----HGLR---PLPPPRQAVLRRIYDPLVGELLDQGLVMWFPSPHSFTGDDTVELHLHGSRAVIEGVFEAFRRLQNALVEGWGEVRVRFDGLRPAERGEYTRRAFENGRLDLMEVEGLADLIAADTSSQR-QQAIRQMRGGLSAVYERWRHELTSALAWLEAAIDFGDDD 290          
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A433PEK5_9FUNG (tRNA modification GTPase GTPBP3, mitochondrial-like protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PEK5_9FUNG)

HSP 1 Score: 197 bits (501), Expect = 3.020e-53
Identity = 112/209 (53.59%), Postives = 141/209 (67.46%), Query Frame = 0
Query:  273 TIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLGVRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 481
            TIFALS+   G AGVA++R+SGPRS+QV+  + R+                    +EGG     LP PR AV RR+  P SGDLLD  L+LW PGP SFTGED +ELH HG  AV+ GVLDALGS+     R+AERGEF++RA+ N ++DLT +EGLADL+ A+T AQRKQ ALRQ  G L+  YE+WR QL + +A  EA+IDFG+DE
Sbjct:   44 TIFALSSA-PGKAGVAIIRISGPRSSQVITKMARA--------------------KEGGTH---LPNPRYAVFRRILHPISGDLLDRGLILWFPGPTSFTGEDVVELHVHGGNAVVRGVLDALGSIDST-FRLAERGEFSRRAFDNDKLDLTSIEGLADLLNAETEAQRKQ-ALRQAEGGLKHLYESWRTQLIKNMALLEAIIDFGEDE 226          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K111_9PHAE8.040e-8774.67TrmE-type G domain-containing protein n=1 Tax=Ecto... [more]
D8LG51_ECTSI1.070e-8471.05TrmE, organellal GTPase involved in tRNA modificat... [more]
A0A836CK05_9STRA5.460e-7766.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CTT5_9STRA5.320e-6069.62TrmE-type G domain-containing protein n=4 Tax=Mono... [more]
A0A7S4DLF8_HETAK6.090e-5956.16Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3H4J6_9STRA5.300e-5853.52Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0IYM9_9EUKA1.780e-5555.19Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S1TUE7_9STRA2.110e-5553.92Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0G4EE61_VITBC6.370e-5452.68Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A433PEK5_9FUNG3.020e-5353.59tRNA modification GTPase GTPBP3, mitochondrial-lik... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027368tRNA modification GTPase MnmE domain 2GENE3D1.20.120.430coord: 421..481
e-value: 9.0E-17
score: 64.2
IPR027266GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1GENE3D3.30.1360.120coord: 266..420
e-value: 5.8E-38
score: 131.6
IPR018948GTP-binding protein TrmE, N-terminalPFAMPF10396TrmE_Ncoord: 273..420
e-value: 1.0E-34
score: 119.3
IPR025867MnmE, helical domainPFAMPF12631MnmE_helicalcoord: 423..481
e-value: 9.9E-15
score: 55.3
NoneNo IPR availablePANTHERPTHR42714FAMILY NOT NAMEDcoord: 269..481
NoneNo IPR availablePANTHERPTHR42714:SF2TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIALcoord: 269..481
NoneNo IPR availableSUPERFAMILY103025Folate-binding domaincoord: 272..420
NoneNo IPR availableSUPERFAMILY116878TrmE connector domaincoord: 421..481

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75686contigH-elongata_contig75686:216..2884 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75686.15259.1mRNA_H-elongata_contig75686.15259.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig75686 216..2884 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig75686.15259.1 ID=prot_H-elongata_contig75686.15259.1|Name=mRNA_H-elongata_contig75686.15259.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=481bp
TNCRFRTWYSEEPPKVNTMKDFRKPTDSTSCRGVHDRLCPEHRASYLGMQ
ANLVQLKLVVPVLVLLLSLEGTGFLVKAPRGGVAVARTRTYSLTTTAISS
TGIMHQRCCGLGSVICRAYLSRCDWSTKSMIMLRPLPPPPPRDGGGNGWG
GRRLMTGFAATAAAATTRAATETYITKKNGSAARVSSSTWGEMKLLRPLP
RPAASLICPHDVGNGIYATRVPPTASSKTTIRSAQQDRNRPAVTNSRRKS
SSSNSDIIDSNIDRTRETSEDHTIFALSTGNSGPAGVAVVRVSGPRSAQV
LEALTRSPGRLVSPPPTTDEGGGGGWDREGGRKGPPLPAPRRAVVRRLYD
PASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRK
LGVRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMG
GALREKYEAWREQLKECLAHAEAVIDFGDDE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027368MnmE_dom2
IPR027266TrmE/GcvT_dom1
IPR018948GTP-bd_TrmE_N
IPR025867MnmE_helical