mRNA_H-elongata_contig75686.15259.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75686.15259.1
Unique NamemRNA_H-elongata_contig75686.15259.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A6H5K111_9PHAE (TrmE-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K111_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 8.040e-87
Identity = 171/229 (74.67%), Postives = 185/229 (80.79%), Query Frame = 1 
Query:  805 SEDHTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTR------------SPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLG----VRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 1443
            S + TIFAL+TGN+GPAGVAVVR+SGP SAQVL+ALT             S GR     XXXXXXXXXX     GR+ PP PA RRAVVRRLYDPA+GDLLDEALVLWMPGPRSFTGEDT+ELHTHGSRAVINGVLDAL ++        VR+AERGEFTQRAYGNGRMDLTGVEGLADL+AADTAAQRKQ AL+QMGGALR+ YE WR QLK CLAHAEAVIDFGDDE
Sbjct:   29 SSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSATTLSSATAAEASAGRDAGVAXXXXXXXXXXXX-XAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRSFTGEDTVELHTHGSRAVINGVLDALAAMGAASGLRRVRLAERGEFTQRAYGNGRMDLTGVEGLADLVAADTAAQRKQ-ALKQMGGALRDMYEEWRHQLKGCLAHAEAVIDFGDDE 255
[Close]
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: D8LG51_ECTSI (TrmE, organellal GTPase involved in tRNA modification n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG51_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 1.070e-84
Identity = 162/228 (71.05%), Postives = 174/228 (76.32%), Query Frame = 1 
Query:  805 SEDHTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREG-----------GRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLG----VRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 1443
            S + TIFAL+TGN+GPAGVAVVR+SGP SAQVL+ALT S   L S                            GR+ PP PA RRAVVRRLYDPA+GDLLDEALVLWMPGPRSFTGEDT+ELHTHGSRAVINGVLDAL  +        VR+AERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQ AL+QMGGALR+ YE WR QLK CLAHAEAVIDFGDDE
Sbjct:  193 SSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALT-SAANLSSVTAAEASAGGDAGVAASAAPAVVNGGGAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRSFTGEDTVELHTHGSRAVINGVLDALAGMGAASGMRRVRLAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQ-ALKQMGGALRDMYEEWRHQLKGCLAHAEAVIDFGDDE 418
[Close]
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A836CK05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK05_9STRA)

HSP 1 Score: 258 bits (658), Expect = 5.460e-77
Identity = 140/209 (66.99%), Postives = 156/209 (74.64%), Query Frame = 1 
Query:  817 TIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLGVRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 1443
            TIFALS+G +G AGVAV+RVSGP +   L  L  +PGR                          +P  RRA VRRLYDP  GDLLDEALVLWMPGPRSFTGEDT ELHTHGSRAV+ GVL ALG++   G+R AERGEFTQRAYGNGRMDLT VEGLADLIAADTA QR+Q ALRQMGGAL++KYE+WRE+L +CLAH EAVIDFGDDE
Sbjct:    5 TIFALSSGPAGQAGVAVIRVSGPAAGDALHTLITAPGRHAK-----------------------MPEARRAAVRRLYDPVKGDLLDEALVLWMPGPRSFTGEDTTELHTHGSRAVVGGVLGALGTIP--GLRPAERGEFTQRAYGNGRMDLTEVEGLADLIAADTAEQRRQ-ALRQMGGALKDKYESWREELTKCLAHTEAVIDFGDDE 187
[Close]
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A4D9CTT5_9STRA (TrmE-type G domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTT5_9STRA)

HSP 1 Score: 213 bits (542), Expect = 5.320e-60
Identity = 110/158 (69.62%), Postives = 126/158 (79.75%), Query Frame = 1 
Query:  979 DREGGRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLG---VRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 1443
            D   G    P PAPR A +R+LY P   + LD+A+VLW+PGPRSFTGEDT+ELH HGSRAV+ GV +AL +L K G   VR+AE GEFT+RA+ NGRMDLT VEGLADLIAADTAAQRKQ AL+QMGGALR+ YE WRE+LK CLAH EAVIDFGDDE
Sbjct:    2 DSHSGHSSAPFPAPRMASLRKLYSPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGKARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQ-ALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDE 158
[Close]
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A7S4DLF8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DLF8_HETAK)

HSP 1 Score: 204 bits (520), Expect = 6.090e-59
Identity = 114/203 (56.16%), Postives = 143/203 (70.44%), Query Frame = 1 
Query:  817 TIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLGV---RMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAE 1416
            TI+ALS+G+   AGVA++R+SGPR+ +VLE LT  P                  D     KG  +P PR A +R+++DP + +LLDE+LVLW PGP+SFTGEDT+ELH HGSRAV++GVL+ LG L    V   R+A+RGEFTQRA+ NGR+DLT VEGLADLIAADTAAQR+Q AL+QMGG+L   Y  WR +L  CLAH E
Sbjct:   96 TIYALSSGHGVVAGVAIIRISGPRAQEVLEQLTAPPP-----------------DTHQFAKGK-IPTPRMACMRKIFDPETKELLDESLVLWFPGPKSFTGEDTVELHVHGSRAVVSGVLEGLGKLSPSSVGAVRVADRGEFTQRAFRNGRLDLTEVEGLADLIAADTAAQRRQ-ALKQMGGSLSALYLDWRARLAACLAHTE 279
[Close]
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A7S3H4J6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4J6_9STRA)

HSP 1 Score: 205 bits (521), Expect = 5.300e-58
Identity = 114/213 (53.52%), Postives = 139/213 (65.26%), Query Frame = 1 
Query:  817 TIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDAL----GSLRKLGVRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 1443
            TIFALS+G    +GVAVVR+SGP S   LE L   PG   SP                       P PR A ++ LY P + D+LD++L+LW PGPRSFTGED +ELH HGSRAVI GV +AL      L    +R A  GEFT+RA+ NG+MDLT VEGL+DL+ A+T+ QRKQ AL+QM G LR++YEAWR+ L  CLAH EAVIDFGDD+
Sbjct:   59 TIFALSSGPIAKSGVAVVRISGPSSLYCLERLAVKPGASTSPF---------------------APKPREATLKALYSPVTDDVLDQSLILWFPGPRSFTGEDVVELHVHGSRAVIKGVFEALEHLDDPLSGRAIRPAAPGEFTRRAFDNGKMDLTEVEGLSDLLDAETSEQRKQ-ALKQMEGHLRKQYEAWRDVLMSCLAHTEAVIDFGDDD 249
[Close]
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A7S0IYM9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IYM9_9EUKA)

HSP 1 Score: 194 bits (492), Expect = 1.780e-55
Identity = 117/212 (55.19%), Postives = 136/212 (64.15%), Query Frame = 1 
Query:  823 FALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDP------ASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLGVRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDD 1440
            FALS+G    AGV+V+RVSGP++   L  L  +PG   SP                      LP PRRAV+R L  P      A G+L+D ALVLW P PRSFTGEDT+ELHTHGSRAV+   L+ALG L   G+R+AE GEFT++A+ NGRMDLT VEGL DLI ADT  QRKQ AL QM G  R  YE WRE L  CLAH EA+IDFG+D
Sbjct:    1 FALSSGAGVRAGVSVIRVSGPQAGAAL--LQLAPGAKSSPE---------------------LPPPRRAVLRALLRPQTPAEDAHGELIDNALVLWFPAPRSFTGEDTLELHTHGSRAVVASTLEALGRLP--GLRLAEPGEFTRQAFSNGRMDLTEVEGLGDLINADTEEQRKQ-ALAQMEGVQRRVYEQWREALLVCLAHTEALIDFGED 186
[Close]
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A7S1TUE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUE7_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.110e-55
Identity = 117/217 (53.92%), Postives = 139/217 (64.06%), Query Frame = 1 
Query:  817 TIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDPA-SGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLGV-------RMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 1443
            TI+A+S+G    AGV V+RVSGP++   L  L  S                       G    P P PR A VRRL  P   G+ LDEALVLWMPGPRSFTG+D +ELH HGSRAV+ GVL AL +   + +       RMAE GEFT++A+ NGRMDL  VEGLADL+AADT+AQRKQ AL QM GAL  +Y  WR+ L +CLAHAEAV+DFGDDE
Sbjct:   26 TIYAVSSGQGVVAGVTVIRVSGPQAGPALRCLLGS-----------------------GDAEQPFPKPRYAAVRRLIAPGPGGEELDEALVLWMPGPRSFTGQDVVELHCHGSRAVVAGVLGALEATSDVLLSGSGDIMRMAEPGEFTRQAFSNGRMDLAQVEGLADLLAADTSAQRKQ-ALEQMKGALSTRYAEWRKSLVKCLAHAEAVLDFGDDE 218
[Close]
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A0G4EE61_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EE61_VITBC)

HSP 1 Score: 201 bits (510), Expect = 6.370e-54
Identity = 118/224 (52.68%), Postives = 144/224 (64.29%), Query Frame = 1 
Query:  811 DHTIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKL-------------GVRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 1443
            D TI+ALS+G SG AGVAV+R+SGP S  +L+ LT  P                     G R   PLP PR+AV+RR+YDP  G+LLD+ LV+W P P SFTG+DT+ELH HGSRAVI GV +A   L+               G+R AERGE+T+RA+ NGR+DL  VEGLADLIAADT++QR QQA+RQM G L   YE WR +L   LA  EA IDFGDD+
Sbjct:   77 DDTIYALSSG-SGKAGVAVIRISGPLSPLILQLLTTDPSTRPCSSSSSNAIPY-----HGLR---PLPPPRQAVLRRIYDPLVGELLDQGLVMWFPSPHSFTGDDTVELHLHGSRAVIEGVFEAFRRLQNALVEGWGEVRVRFDGLRPAERGEYTRRAFENGRLDLMEVEGLADLIAADTSSQR-QQAIRQMRGGLSAVYERWRHELTSALAWLEAAIDFGDDD 290
[Close]
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Match: A0A433PEK5_9FUNG (tRNA modification GTPase GTPBP3, mitochondrial-like protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PEK5_9FUNG)

HSP 1 Score: 197 bits (501), Expect = 3.020e-53
Identity = 112/209 (53.59%), Postives = 141/209 (67.46%), Query Frame = 1 
Query:  817 TIFALSTGNSGPAGVAVVRVSGPRSAQVLEALTRSPGRLVSPXXXXXXXXXXXWDREGGRKGPPLPAPRRAVVRRLYDPASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRKLGVRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMGGALREKYEAWREQLKECLAHAEAVIDFGDDE 1443
            TIFALS+   G AGVA++R+SGPRS+QV+  + R+                    +EGG     LP PR AV RR+  P SGDLLD  L+LW PGP SFTGED +ELH HG  AV+ GVLDALGS+     R+AERGEF++RA+ N ++DLT +EGLADL+ A+T AQRKQ ALRQ  G L+  YE+WR QL + +A  EA+IDFG+DE
Sbjct:   44 TIFALSSA-PGKAGVAIIRISGPRSSQVITKMARA--------------------KEGGTH---LPNPRYAVFRRILHPISGDLLDRGLILWFPGPTSFTGEDVVELHVHGGNAVVRGVLDALGSIDST-FRLAERGEFSRRAFDNDKLDLTSIEGLADLLNAETEAQRKQ-ALRQAEGGLKHLYESWRTQLIKNMALLEAIIDFGEDE 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75686.15259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K111_9PHAE8.040e-8774.67TrmE-type G domain-containing protein n=1 Tax=Ecto... [more]
D8LG51_ECTSI1.070e-8471.05TrmE, organellal GTPase involved in tRNA modificat... [more]
A0A836CK05_9STRA5.460e-7766.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CTT5_9STRA5.320e-6069.62TrmE-type G domain-containing protein n=4 Tax=Mono... [more]
A0A7S4DLF8_HETAK6.090e-5956.16Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3H4J6_9STRA5.300e-5853.52Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0IYM9_9EUKA1.780e-5555.19Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S1TUE7_9STRA2.110e-5553.92Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0G4EE61_VITBC6.370e-5452.68Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A433PEK5_9FUNG3.020e-5353.59tRNA modification GTPase GTPBP3, mitochondrial-lik... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75686contigH-elongata_contig75686:216..2884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score289.7
Seed ortholog evalue2.6e-75
Seed eggNOG ortholog2880.D8LG51
Preferred nameGTPBP3
KEGG rclassRC00053,RC00209,RC00870
KEGG koko:K03650,ko:K10769
KEGG ReactionR08701
GOsGO:0000166,GO:0000959,GO:0000963,GO:0001882,GO:0001883,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009790,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032543,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048513,GO:0048568,GO:0048731,GO:0048856,GO:0070525,GO:0070899,GO:0070900,GO:0071704,GO:0090304,GO:0090646,GO:0097159,GO:0097367,GO:0140053,GO:1900864,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.GTP binding
EggNOG OGsCOG0486@1,KOG1191@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons4
Model size1443
Cds size1443
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75686.15259.1prot_H-elongata_contig75686.15259.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75686 216..2884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.776997-CDS-H-elongata_contig75686:215..6791622931162.776997-CDS-H-elongata_contig75686:215..679Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75686 216..679 +
1691679723.957076-CDS-H-elongata_contig75686:215..6791691679723.957076-CDS-H-elongata_contig75686:215..679Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75686 216..679 +
1622931162.790016-CDS-H-elongata_contig75686:706..13511622931162.790016-CDS-H-elongata_contig75686:706..1351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75686 707..1351 +
1691679723.9708314-CDS-H-elongata_contig75686:706..13511691679723.9708314-CDS-H-elongata_contig75686:706..1351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75686 707..1351 +
1622931162.807046-CDS-H-elongata_contig75686:2157..23771622931162.807046-CDS-H-elongata_contig75686:2157..2377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75686 2158..2377 +
1691679723.980737-CDS-H-elongata_contig75686:2157..23771691679723.980737-CDS-H-elongata_contig75686:2157..2377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75686 2158..2377 +
1622931162.8263247-CDS-H-elongata_contig75686:2770..28841622931162.8263247-CDS-H-elongata_contig75686:2770..2884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75686 2771..2884 +
1691679723.9928393-CDS-H-elongata_contig75686:2770..28841691679723.9928393-CDS-H-elongata_contig75686:2770..2884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75686 2771..2884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75686.15259.1

>prot_H-elongata_contig75686.15259.1 ID=prot_H-elongata_contig75686.15259.1|Name=mRNA_H-elongata_contig75686.15259.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=481bp
TNCRFRTWYSEEPPKVNTMKDFRKPTDSTSCRGVHDRLCPEHRASYLGMQ
ANLVQLKLVVPVLVLLLSLEGTGFLVKAPRGGVAVARTRTYSLTTTAISS
TGIMHQRCCGLGSVICRAYLSRCDWSTKSMIMLRPLPPPPPRDGGGNGWG
GRRLMTGFAATAAAATTRAATETYITKKNGSAARVSSSTWGEMKLLRPLP
RPAASLICPHDVGNGIYATRVPPTASSKTTIRSAQQDRNRPAVTNSRRKS
SSSNSDIIDSNIDRTRETSEDHTIFALSTGNSGPAGVAVVRVSGPRSAQV
LEALTRSPGRLVSPPPTTDEGGGGGWDREGGRKGPPLPAPRRAVVRRLYD
PASGDLLDEALVLWMPGPRSFTGEDTIELHTHGSRAVINGVLDALGSLRK
LGVRMAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQQALRQMG
GALREKYEAWREQLKECLAHAEAVIDFGDDE
back to top

mRNA from alignment at H-elongata_contig75686:216..2884+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75686.15259.1 ID=mRNA_H-elongata_contig75686.15259.1|Name=mRNA_H-elongata_contig75686.15259.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2669bp|location=Sequence derived from alignment at H-elongata_contig75686:216..2884+ (Himanthalia elongata Himel1 dioecious)
ACTAACTGTAGATTCCGCACTTGGTATTCTGAAGAACCCCCAAAAGTAAA
TACGATGAAAGACTTTAGAAAACCAACCGATTCAACGAGCTGCCGAGGAG
TCCACGATCGACTCTGTCCAGAGCACCGAGCATCATATTTAGGCATGCAA
GCGAATCTAGTCCAGCTGAAACTTGTTGTACCAGTTCTGGTGTTGCTGCT
ATCGCTGGAGGGAACGGGGTTCTTGGTGAAGGCTCCTCGTGGTGGTGTTG
CAGTAGCCCGAACAAGAACTTATTCTTTAACGACAACGGCTATCAGCAGC
ACTGGTATCATGCATCAGAGATGTTGTGGGCTAGGGAGCGTTATCTGTCG
AGCGTATCTCAGTCGCTGCGATTGGAGCACCAAATCTATGATAATGCTAC
GGCCGTTACCACCGCCACCACCACGTGATGGTGGTGGAAACGGATGGGGT
GGTCGCAGGCTGATGTCGGGAGAAACCACAACAGCCGCAAGGACGGGGTT
TGCAGCAACAGCAGCAGCAGCGACAACACGAGCAGCAACAGAGACATACA
TTACGAAAAAAAATGGATCGGCAGCAAGAGTTTCATCTTCCACCTGGGGG
GAAATGAAACTGCTCCGACCTCTGCCGCGTCCGGCAGCGTCACTGATATG
TCCGCACGATGTTGGCAACGGCATATATGCCACTCGTGTACCTCCTACTG
CTTCGTCAAAGACAACAATACGGTCAGCGCAGCAAGATCGAAATCGACCT
GCCGTCACTAATAGCAGAAGAAAGAGCAGCAGCAGTAACAGCGACATCAT
CGACAGTAACATCGACCGGACGAGGGAAACGTCTGAGGACCATACTATAT
TCGCGTTATCGACAGGCAACTCGGGCCCAGCGGGAGTGGCTGTCGTGCGC
GTGTCCGGCCCGCGGTCTGCGCAGGTCCTGGAGGCTCTCACCAGGAGCCC
GGGGAGGCTTGTCTCCCCACCTCCGACCACGGACGAAGGAGGAGGCGGTG
GGTGGGACAGGGAAGGGGGAAGGAAAGGCCCGCCGTTGCCGGCCCCGAGG
CGCGCCGTGGTGCGGCGCCTATACGATCCTGCCTCGGGGGATCTCTTGGA
CGAGGCGCTCGTGCTGTGGATGCCCGGACCTCGCAGGTGTGAGACTGTCG
TGTCGTGTCGATTTTCAATTTGTTATGATAACGGAATGCCGGTTGTTTTT
TGTTTGTACTGTTTGTGTTGGGTATATATCGGTTGCGTTGGTGCGACAGG
TGGTGGCGGTTTGGTGTGTAATTATCTCGATACGGCAGTAGTGCAGCGGA
CAATACTACACGTGATGTGGTGTATTTTCGTCGACGGCGTTCTTTTGGTG
TGACGGCTTCTTTGCACCTGCGCGTCTTGTTTGCAACCCTTCACTGCGTT
CTACCACTATCAAGTTGACAGGCTGTAGGCCGTTATAACCCGCCTAGGAT
ATAGGACCGTGGGGAATACTACGGCGTGTGGGTGCTACACGTCGACGCAG
CTCGATGAAAAATGATACATCGTGTGTGGGGGGGCGGGGAAGTGGGAGGA
GGACCACGGCAGTCAGCTATTGCAATTCTGGCATTCCTGGTAGTCGAGGC
TGCTTGTGCAATTCAATTAACCGAGAAACAGCTACGGTCGGTACTCCAAT
GTGCCTACCAAGAGTATATATAGTAGCAGGCTCTTTCACCCCCCTACACC
CCCCAGCCTCGAAACATATCACCGCTACAAACAGTACATCACCGCTGAGT
AATTCTGATGCGTACGCTGCATTTTTTATTCCGCTCAATATATTGTATAC
TGTATATAATAATAAAAATAATAATACTGCCCAACAGAGAGTATACAACC
TTGGTGCCCTGTTGTCCCCCCCTCCCCTCCCCCCCCCACGCCGCCTATTT
CAAAATGAAGCTCAATTCCTTCATTTTTTTTTATTCAAACAGCTTCACCG
GAGAAGACACGATCGAGCTGCACACGCACGGTAGCCGAGCCGTCATCAAC
GGGGTCCTCGACGCCCTGGGAAGCCTGCGCAAGCTGGGGGTGCGCATGGC
CGAGCGGGGAGAGTTCACACAGCGGGCCTATGGTAACGGCCGAATGGACC
TCACAGGAGTCGAGGGGCTGGCAGATCTCATCGCGGCCGACACGGCAGCG
CAGAGGAAGCAGGTGGGTTCCCGCCGCCGCTGTTGCTGTTGCTGTTGCTG
TTCCTGATGATGCTGCGCCCGTCCTACAACGCAGCATTATCACCAACTGT
GCAATACATCCGAAAGCAGTACACATGGCAAAAAATGTTCAATGATATAT
ACTCCGTGGGACACGCTTTGCGATTTCTCGTCGATGCATCTTGCGGCAGA
GGCGCGGGAAGGACCGTGAACCGCTGCACTAGTGTCTAAAAACACAAAGC
GAAATACACATTTACTGTACATGCATTGATACCGAAGACGGAAGAGAGTA
GAAGATAAAAAGGAAAATCTGCCAGCGGACGTTGTGCAACCATTTAATAG
CAACGCTCATGCGATCGTGACGATGCGTTCGCGGATCGCGTTCGGTCGGT
CCAAGCAGGCCCTGAGACAGATGGGTGGCGCGCTCCGAGAAAAGTACGAG
GCCTGGCGGGAACAGCTGAAGGAATGTCTAGCCCACGCCGAGGCCGTTAT
CGACTTCGGGGATGATGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig75686:216..2884+

>mRNA_H-elongata_contig75686.15259.1 ID=mRNA_H-elongata_contig75686.15259.1|Name=mRNA_H-elongata_contig75686.15259.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2886bp|location=Sequence derived from alignment at H-elongata_contig75686:216..2884+ (Himanthalia elongata Himel1 dioecious)
ACTAACTGTAGATTCCGCACTTGGTATTCTGAAGAACCCCCAAAAGTAAA
TACGATGAAAGACTTTAGAAAACCAACCGATTCAACGAGCTGCCGAGGAG
TCCACGATCGACTCTGTCCAGAGCACCGAGCATCATATTTAGGCATGCAA
GCGAATCTAGTCCAGCTGAAACTTGTTGTACCAGTTCTGGTGTTGCTGCT
ATCGCTGGAGGGAACGGGGTTCTTGGTGAAGGCTCCTCGTGGTGGTGTTG
CAGTAGCCCGAACAAGAACTTATTCTTTAACGACAACGGCTATCAGCAGC
ACTGGTATCATGCATCAGAGATGTTGTGGGCTAGGGAGCGTTATCTGTCG
AGCGTATCTCAGTCGCTGCGATTGGAGCACCAAATCTATGATAATGCTAC
GGCCGTTACCACCGCCACCACCACGTGATGGTGGTGGAAACGGATGGGGT
GGTCGCAGGCTGATACTAACTGTAGATTCCGCACTTGGTATTCTGAAGAA
CCCCCAAAAGTAAATACGATGAAAGACTTTAGAAAACCAACCGATTCAAC
GAGCTGCCGAGGAGTCCACGATCGACTCTGTCCAGAGCACCGAGCATCAT
ATTTAGGCATGCAAGCGAATCTAGTCCAGCTGAAACTTGTTGTACCAGTT
CTGGTGTTGCTGCTATCGCTGGAGGGAACGGGGTTCTTGGTGAAGGCTCC
TCGTGGTGGTGTTGCAGTAGCCCGAACAAGAACTTATTCTTTAACGACAA
CGGCTATCAGCAGCACTGGTATCATGCATCAGAGATGTTGTGGGCTAGGG
AGCGTTATCTGTCGAGCGTATCTCAGTCGCTGCGATTGGAGCACCAAATC
TATGATAATGCTACGGCCGTTACCACCGCCACCACCACGTGATGGTGGTG
GAAACGGATGGGGTGGTCGCAGGCTGATGACGGGGTTTGCAGCAACAGCA
GCAGCAGCGACAACACGAGCAGCAACAGAGACATACATTACGAAAAAAAA
TGGATCGGCAGCAAGAGTTTCATCTTCCACCTGGGGGGAAATGAAACTGC
TCCGACCTCTGCCGCGTCCGGCAGCGTCACTGATATGTCCGCACGATGTT
GGCAACGGCATATATGCCACTCGTGTACCTCCTACTGCTTCGTCAAAGAC
AACAATACGGTCAGCGCAGCAAGATCGAAATCGACCTGCCGTCACTAATA
GCAGAAGAAAGAGCAGCAGCAGTAACAGCGACATCATCGACAGTAACATC
GACCGGACGAGGGAAACGTCTGAGGACCATACTATATTCGCGTTATCGAC
AGGCAACTCGGGCCCAGCGGGAGTGGCTGTCGTGCGCGTGTCCGGCCCGC
GGTCTGCGCAGGTCCTGGAGGCTCTCACCAGGAGCCCGGGGAGGCTTGTC
TCCCCACCTCCGACCACGGACGAAGGAGGAGGCGGTGGGTGGGACAGGGA
AGGGGGAAGGAAAGGCCCGCCGTTGCCGGCCCCGAGGCGCGCCGTGGTGC
GGCGCCTATACGATCCTGCCTCGGGGGATCTCTTGGACGAGGCGCTCGTG
CTGTGGATGCCCGGACCTCGCAGGACGGGGTTTGCAGCAACAGCAGCAGC
AGCGACAACACGAGCAGCAACAGAGACATACATTACGAAAAAAAATGGAT
CGGCAGCAAGAGTTTCATCTTCCACCTGGGGGGAAATGAAACTGCTCCGA
CCTCTGCCGCGTCCGGCAGCGTCACTGATATGTCCGCACGATGTTGGCAA
CGGCATATATGCCACTCGTGTACCTCCTACTGCTTCGTCAAAGACAACAA
TACGGTCAGCGCAGCAAGATCGAAATCGACCTGCCGTCACTAATAGCAGA
AGAAAGAGCAGCAGCAGTAACAGCGACATCATCGACAGTAACATCGACCG
GACGAGGGAAACGTCTGAGGACCATACTATATTCGCGTTATCGACAGGCA
ACTCGGGCCCAGCGGGAGTGGCTGTCGTGCGCGTGTCCGGCCCGCGGTCT
GCGCAGGTCCTGGAGGCTCTCACCAGGAGCCCGGGGAGGCTTGTCTCCCC
ACCTCCGACCACGGACGAAGGAGGAGGCGGTGGGTGGGACAGGGAAGGGG
GAAGGAAAGGCCCGCCGTTGCCGGCCCCGAGGCGCGCCGTGGTGCGGCGC
CTATACGATCCTGCCTCGGGGGATCTCTTGGACGAGGCGCTCGTGCTGTG
GATGCCCGGACCTCGCAGCTTCACCGGAGAAGACACGATCGAGCTGCACA
CGCACGGTAGCCGAGCCGTCATCAACGGGGTCCTCGACGCCCTGGGAAGC
CTGCGCAAGCTGGGGGTGCGCATGGCCGAGCGGGGAGAGTTCACACAGCG
GGCCTATGGTAACGGCCGAATGGACCTCACAGGAGTCGAGGGGCTGGCAG
ATCTCATCGCGGCCGACACGGCAGCGCAGAGGAAGCAGCTTCACCGGAGA
AGACACGATCGAGCTGCACACGCACGGTAGCCGAGCCGTCATCAACGGGG
TCCTCGACGCCCTGGGAAGCCTGCGCAAGCTGGGGGTGCGCATGGCCGAG
CGGGGAGAGTTCACACAGCGGGCCTATGGTAACGGCCGAATGGACCTCAC
AGGAGTCGAGGGGCTGGCAGATCTCATCGCGGCCGACACGGCAGCGCAGA
GGAAGCAGCAGGCCCTGAGACAGATGGGTGGCGCGCTCCGAGAAAAGTAC
GAGGCCTGGCGGGAACAGCTGAAGGAATGTCTAGCCCACGCCGAGGCCGT
TATCGACTTCGGGGATGATGAGCAGGCCCTGAGACAGATGGGTGGCGCGC
TCCGAGAAAAGTACGAGGCCTGGCGGGAACAGCTGAAGGAATGTCTAGCC
CACGCCGAGGCCGTTATCGACTTCGGGGATGATGAG
back to top