mRNA_H-elongata_contig75672.15257.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75672.15257.1
Unique NamemRNA_H-elongata_contig75672.15257.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75672.15257.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 3.550e-23
Identity = 98/237 (41.35%), Postives = 110/237 (46.41%), Query Frame = 1 
Query:   28 TTRRSSADVVLCSLERLADT-GGVGAGAVATADVRVARSVRWSQVVLDVRGFPTATSTAALASTAALTPFAGGEP-------------------MNWALFSHLAKGATLALAVDDAPASMAASVVAAV------DEKRLAGLSSFALASAVPGPRAALXXXXXXXXXXXXTGACPRT------------------------------GTGGGGVRAELVGMLSGVQLVRRGLAERLL 570
            T RRSS DVVLCSLERLA+  GGV      +AD R+ARSVRWSQVVLDVRG  TA +                                     +NW LFS LAKGA LALA+DDA  +               +E RLAGL SFALASAVPGPRAAL            +G                                   G GG GV AEL G++S V+LVR GLA RLL
Sbjct:  730 TARRSSVDVVLCSLERLAEVDGGV------SADARLARSVRWSQVVLDVRGVSTAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKAGCRFTVNWPLFSSLAKGAALALALDDAGNTXXXXXXXXXXXXVVREENRLAGLVSFALASAVPGPRAALSLGKARATSTATSGGAXXXXXXXXXXXXXXALSXXXXXXXTGGSMAAARGPGGRGVCAELAGIVSAVRLVRPGLAGRLL 960
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75672.15257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHX4_9PHAE3.550e-2341.35SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75672contigH-elongata_contig75672:1487..2731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-05_001030.1
Exons2
Model size633
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.6419823-CDS-H-elongata_contig75672:1486..16421622931162.6419823-CDS-H-elongata_contig75672:1486..1642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75672 1487..1642 +
1691679723.9146364-CDS-H-elongata_contig75672:1486..16421691679723.9146364-CDS-H-elongata_contig75672:1486..1642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75672 1487..1642 +
1622931162.6619794-CDS-H-elongata_contig75672:2255..27291622931162.6619794-CDS-H-elongata_contig75672:2255..2729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75672 2256..2729 +
1691679723.9249887-CDS-H-elongata_contig75672:2255..27291691679723.9249887-CDS-H-elongata_contig75672:2255..2729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75672 2256..2729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75672.15257.1prot_H-elongata_contig75672.15257.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75672 1487..2729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75672.15257.1

>prot_H-elongata_contig75672.15257.1 ID=prot_H-elongata_contig75672.15257.1|Name=mRNA_H-elongata_contig75672.15257.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp
HRSSALPSSTTRRSSADVVLCSLERLADTGGVGAGAVATADVRVARSVRW
SQVVLDVRGFPTATSTAALASTAALTPFAGGEPMNWALFSHLAKGATLAL
AVDDAPASMAASVVAAVDEKRLAGLSSFALASAVPGPRAALALAKARAAS
AGATGACPRTGTGGGGVRAELVGMLSGVQLVRRGLAERLLARPRAAVAAG
AAAAAAGAKG
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mRNA from alignment at H-elongata_contig75672:1487..2731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75672.15257.1 ID=mRNA_H-elongata_contig75672.15257.1|Name=mRNA_H-elongata_contig75672.15257.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1245bp|location=Sequence derived from alignment at H-elongata_contig75672:1487..2731+ (Himanthalia elongata Himel1 dioecious)
CATAGGTCGTCAGCTTTGCCGTCTTCGACCACGCGTCGATCCTCCGCGGA
CGTTGTGCTCTGTTCCCTGGAGCGATTGGCAGACACGGGTGGCGTCGGAG
CGGGAGCCGTGGCGACGGCGGACGTCAGAGTGGCGCGATCGGTTCGCTGG
AGCCAGGTAAAGTTTCGGCGGAGTGAGGTGGTGGATTTGGGTGGTGATGC
GTCAGAATCGGGTAATAATTCCGTGGCGATTCGGATGAAAATTCGTTAAG
ATTCAGTTGCCGACGATTCGGTGGAGTCTGGTTCTAGATCCTCATGGTGT
CTTCATGGTGTCTGGTGATGTTGACGCATCTATTTTCCCTTTGTGTTGCC
TGTGGCAGTTTGTAATAATGGTGACTTCGGTCGATCGTTGCTCGATGGGG
CCCATTATCTAAAGTATATACGTAGTATATTCTAAGATTTTGTCGCGGAA
TTGTTTTTAACGTGCCATCGATGGGTGTCATGGGTTTATTGGTCCATTGG
GAGATCTCAACGAAAGGGTATTTAGCAGGGCTTCGGTACTGTAGTGCAGT
AGCTTAGATCCGCGTCATCATCGTGCGCGGACGGTTGTTGTGTACCCATC
ACTCCTTAGCGTTGCCGTGATCGTGGTCGTGGGTCCGCTCTATACTTTAC
TAGTCATAGTCTGTATAATATTATCAAATCCTCAGCTTATTCAGTCCACC
CCTCTGACGTCAAGTATCCCACCCCCCTCTCCCAAATCTACCTGGCTTAC
GGTATGCCCTCCGAATCAGGTCGTTTTGGACGTGCGAGGATTTCCGACCG
CCACCTCTACCGCTGCCTTGGCGTCTACGGCAGCTTTAACCCCCTTCGCC
GGTGGGGAACCCATGAACTGGGCCCTCTTCTCTCACCTTGCGAAGGGCGC
GACCCTTGCTCTCGCAGTGGACGACGCTCCAGCTTCGATGGCGGCGTCCG
TGGTGGCAGCAGTAGACGAAAAACGCCTCGCAGGATTGTCTTCTTTTGCG
CTGGCCTCCGCCGTCCCTGGCCCACGCGCAGCTCTGGCGCTCGCGAAGGC
TCGAGCAGCCTCAGCTGGCGCAACAGGGGCGTGTCCGAGGACTGGGACTG
GAGGTGGTGGAGTGCGCGCTGAGCTCGTGGGGATGCTGTCCGGGGTTCAA
TTGGTGAGGCGAGGGCTTGCGGAGAGGCTGTTGGCAAGGCCCAGGGCAGC
GGTAGCTGCAGGCGCAGCAGCTGCTGCGGCGGGGGCAAAAGGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig75672:1487..2731+

>mRNA_H-elongata_contig75672.15257.1 ID=mRNA_H-elongata_contig75672.15257.1|Name=mRNA_H-elongata_contig75672.15257.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1260bp|location=Sequence derived from alignment at H-elongata_contig75672:1487..2731+ (Himanthalia elongata Himel1 dioecious)
CATAGGTCGTCAGCTTTGCCGTCTTCGACCACGCGTCGATCCTCCGCGGA
CGTTGTGCTCTGTTCCCTGGAGCGATTGGCAGACACGGGTGGCGTCGGAG
CGGGAGCCGTGGCGACGGCGGACGTCAGAGTGGCGCGATCGGTTCGCTGG
AGCCAGCATAGGTCGTCAGCTTTGCCGTCTTCGACCACGCGTCGATCCTC
CGCGGACGTTGTGCTCTGTTCCCTGGAGCGATTGGCAGACACGGGTGGCG
TCGGAGCGGGAGCCGTGGCGACGGCGGACGTCAGAGTGGCGCGATCGGTT
CGCTGGAGCCAGGTCGTTTTGGACGTGCGAGGATTTCCGACCGCCACCTC
TACCGCTGCCTTGGCGTCTACGGCAGCTTTAACCCCCTTCGCCGGTGGGG
AACCCATGAACTGGGCCCTCTTCTCTCACCTTGCGAAGGGCGCGACCCTT
GCTCTCGCAGTGGACGACGCTCCAGCTTCGATGGCGGCGTCCGTGGTGGC
AGCAGTAGACGAAAAACGCCTCGCAGGATTGTCTTCTTTTGCGCTGGCCT
CCGCCGTCCCTGGCCCACGCGCAGCTCTGGCGCTCGCGAAGGCTCGAGCA
GCCTCAGCTGGCGCAACAGGGGCGTGTCCGAGGACTGGGACTGGAGGTGG
TGGAGTGCGCGCTGAGCTCGTGGGGATGCTGTCCGGGGTTCAATTGGTGA
GGCGAGGGCTTGCGGAGAGGCTGTTGGCAAGGCCCAGGGCAGCGGTAGCT
GCAGGCGCAGCAGCTGCTGCGGCGGGGGCAAAAGGGGTCGTTTTGGACGT
GCGAGGATTTCCGACCGCCACCTCTACCGCTGCCTTGGCGTCTACGGCAG
CTTTAACCCCCTTCGCCGGTGGGGAACCCATGAACTGGGCCCTCTTCTCT
CACCTTGCGAAGGGCGCGACCCTTGCTCTCGCAGTGGACGACGCTCCAGC
TTCGATGGCGGCGTCCGTGGTGGCAGCAGTAGACGAAAAACGCCTCGCAG
GATTGTCTTCTTTTGCGCTGGCCTCCGCCGTCCCTGGCCCACGCGCAGCT
CTGGCGCTCGCGAAGGCTCGAGCAGCCTCAGCTGGCGCAACAGGGGCGTG
TCCGAGGACTGGGACTGGAGGTGGTGGAGTGCGCGCTGAGCTCGTGGGGA
TGCTGTCCGGGGTTCAATTGGTGAGGCGAGGGCTTGCGGAGAGGCTGTTG
GCAAGGCCCAGGGCAGCGGTAGCTGCAGGCGCAGCAGCTGCTGCGGCGGG
GGCAAAAGGG
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