mRNA_H-elongata_contig75669.15254.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75669.15254.1
Unique NamemRNA_H-elongata_contig75669.15254.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: D7FNB1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB1_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.200e-29
Identity = 74/120 (61.67%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    1 SLERNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVA---DPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKVKGRGG 351
            S+ R+EGLAGLWSGTAPSLVLVSNPIIQFV YE LKQA G R   R+      +    DPR        S AG  SR GAG  + GL SHEAFLLGA AKTISTL+TYPLQ A+ K R G
Sbjct:  155 SIGRHEGLAGLWSGTAPSLVLVSNPIIQFVVYETLKQALGRRHSHRNGEARRIITQPPDPR--------SAAGGGSRGGAGRPSVGLRSHEAFLLGATAKTISTLVTYPLQLAQAKLRAG 266          
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: A0A835YS89_9STRA (Mitochondrial carrier domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS89_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.870e-15
Identity = 46/112 (41.07%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   10 RNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKVKGR 345
            + +GLAGLW+GT PSLVLV+NPIIQFVAY+ LK+     R  R  +    +                             L +HEAF+LGA+AK ++T++TYPLQ A+ K R
Sbjct:   43 KEDGLAGLWAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVRAARGGAAQAKLQ----------------------------LRAHEAFVLGAIAKALATVLTYPLQLAQSKMR 126          
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: UPI001ED8A215 (peroxisomal membrane protein PMP34 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8A215)

HSP 1 Score: 70.1 bits (170), Expect = 9.080e-12
Identity = 47/111 (42.34%), Postives = 57/111 (51.35%), Query Frame = 1
Query:   19 GLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKVKGRGG 351
            G+  LW+GT PSL+LVSNP IQF AYEALK         RH   P     P  SG +  PS                     AFLLGA+AK ++TLITYP+Q  + + R G
Sbjct:  168 GIPALWAGTVPSLILVSNPAIQFAAYEALK---------RHLLNP-----PGASGRLEQPSAL------------------VAFLLGAIAKAVATLITYPIQLIQTRLRHG 246          
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: UPI000626BF98 (peroxisomal membrane protein PMP34 n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI000626BF98)

HSP 1 Score: 67.4 bits (163), Expect = 8.120e-11
Identity = 42/114 (36.84%), Postives = 57/114 (50.00%), Query Frame = 1
Query:   10 RNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKVKGRGG 351
            + EG+  LW+GT PSL+LVSNP IQF+ YEA+K+  G         + C    P                           P+   FL+GA+AKT++T +TYPLQ A+ K R G
Sbjct:  162 KTEGIQKLWAGTLPSLLLVSNPAIQFMTYEAIKRRIG---------KICGATAP---------------------------PAIVFFLIGAVAKTVATTVTYPLQLAQTKLRHG 239          
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: A0A2R5GLV3_9STRA (Mitochondrial substrate carrier family protein Q n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLV3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.120e-10
Identity = 47/112 (41.96%), Postives = 61/112 (54.46%), Query Frame = 1
Query:    4 LERNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKVK 339
            +   +G A LWSG  PSL+LVSNP +QF +YE LK A    RL+   +      D    G V+  +T    S A  G     L S E  LLGA AK I+T++TYPLQ A+ +
Sbjct:  209 IAERDGAASLWSGLGPSLILVSNPSVQFASYEWLKHALLKFRLKMEPT----TRDLMHIGEVMEGATEDVVSEAVLG---TELSSIEYLLLGATAKLIATVVTYPLQVAQTR 313          
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: H9JQJ4_BOMMO (Uncharacterized protein n=1 Tax=Bombyx mori TaxID=7091 RepID=H9JQJ4_BOMMO)

HSP 1 Score: 64.7 bits (156), Expect = 4.110e-10
Identity = 40/116 (34.48%), Postives = 57/116 (49.14%), Query Frame = 1
Query:    4 LERNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKVKGRGG 351
            L R EG  GLWSGT PSL+LVSNP IQF+ YE+LK+   ++                                       G   ++ +FL+GA AK+++T++TYPLQ  + + R G
Sbjct:   98 LARTEGAKGLWSGTVPSLLLVSNPAIQFMVYESLKRTFMSQ---------------------------------------GSFHTYTSFLVGATAKSVATILTYPLQVIQSRLRAG 174          
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: A0A8K0KL56_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KL56_LADFU)

HSP 1 Score: 65.1 bits (157), Expect = 4.550e-10
Identity = 41/102 (40.20%), Postives = 51/102 (50.00%), Query Frame = 1
Query:   19 GLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQ 324
            G+AGLW+GT PSL+LVSNP IQF  YE LK+   N               P  S  +  PS                     AF+LGAMAK I+T++TYP+Q
Sbjct:  168 GIAGLWAGTVPSLLLVSNPAIQFATYEFLKRRLLN---------------PGLSARIEQPSAL------------------TAFILGAMAKAIATVVTYPVQ 236          
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: A0A7R9ZFS4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZFS4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.380e-10
Identity = 44/109 (40.37%), Postives = 58/109 (53.21%), Query Frame = 1
Query:   10 RNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKV 336
            + EG   LWSGT  SLVLVSNP IQF  YE LK    + R +R           R +G++                G   L + EAF++GA+AK ++T+ITYPLQ A+V
Sbjct:    6 KKEGFGQLWSGTWASLVLVSNPAIQFFLYEQLKIYLVSSRFKRR----------RETGAL----------------GLLSLSAVEAFVVGAVAKGVATIITYPLQLAQV 88          
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: A0A6J2KLI1_BOMMA (peroxisomal membrane protein PMP34-like n=5 Tax=Bombyx TaxID=7090 RepID=A0A6J2KLI1_BOMMA)

HSP 1 Score: 64.7 bits (156), Expect = 6.430e-10
Identity = 40/116 (34.48%), Postives = 57/116 (49.14%), Query Frame = 1
Query:    4 LERNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTISTLITYPLQRAKVKGRGG 351
            L R EG  GLWSGT PSL+LVSNP IQF+ YE+LK+   ++                                       G   ++ +FL+GA AK+++T++TYPLQ  + + R G
Sbjct:  145 LARTEGAKGLWSGTVPSLLLVSNPAIQFMVYESLKRTFMSQ---------------------------------------GSFHTYTSFLVGATAKSVATILTYPLQVIQSRLRAG 221          
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Match: UPI001F03CB0A (peroxisomal membrane protein PMP34-like isoform X1 n=3 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03CB0A)

HSP 1 Score: 64.7 bits (156), Expect = 8.510e-10
Identity = 44/115 (38.26%), Postives = 55/115 (47.83%), Query Frame = 1
Query:   10 RNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSRPCSVADPRTSGSVVHPSTAGASSRAGAGGGAG-GLPSHEAFLLGAMAKTISTLITYPLQRAKVKGRGG 351
            R EGL GLWSGT  SLVL SNP IQF  YE +K+                                          GAG  LPS + F++GA+AKT++T++TYP Q A+ K R G
Sbjct:  187 RTEGLRGLWSGTRASLVLTSNPAIQFTVYETIKRYVR---------------------------------------GAGKDLPSWKYFMIGAIAKTMATILTYPCQVAQCKQRTG 262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75669.15254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNB1_ECTSI2.200e-2961.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YS89_9STRA1.870e-1541.07Mitochondrial carrier domain-containing protein (F... [more]
UPI001ED8A2159.080e-1242.34peroxisomal membrane protein PMP34 n=1 Tax=Ischnur... [more]
UPI000626BF988.120e-1136.84peroxisomal membrane protein PMP34 n=1 Tax=Athalia... [more]
A0A2R5GLV3_9STRA2.120e-1041.96Mitochondrial substrate carrier family protein Q n... [more]
H9JQJ4_BOMMO4.110e-1034.48Uncharacterized protein n=1 Tax=Bombyx mori TaxID=... [more]
A0A8K0KL56_LADFU4.550e-1040.20Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A7R9ZFS4_9STRA6.380e-1040.37Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6J2KLI1_BOMMA6.430e-1034.48peroxisomal membrane protein PMP34-like n=5 Tax=Bo... [more]
UPI001F03CB0A8.510e-1038.26peroxisomal membrane protein PMP34-like isoform X1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75669contigH-elongata_contig75669:2654..3016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue3.1e-25
Seed eggNOG ortholog2880.D7FNB1
KEGG koko:K13354
KEGG TC2.A.29.20.1
KEGG Pathwayko04146,map04146
EggNOG free text desc.Belongs to the allantoicase family
EggNOG OGsCOG4266@1,KOG0769@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.2616432-CDS-H-elongata_contig75669:2653..30161622931162.2616432-CDS-H-elongata_contig75669:2653..3016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75669 2654..3016 -
1691679723.7374964-CDS-H-elongata_contig75669:2653..30161691679723.7374964-CDS-H-elongata_contig75669:2653..3016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75669 2654..3016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75669.15254.1prot_H-elongata_contig75669.15254.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75669 2654..3016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75669.15254.1

>prot_H-elongata_contig75669.15254.1 ID=prot_H-elongata_contig75669.15254.1|Name=mRNA_H-elongata_contig75669.15254.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
SLERNEGLAGLWSGTAPSLVLVSNPIIQFVAYEALKQAAGNRRLRRHSSR
PCSVADPRTSGSVVHPSTAGASSRAGAGGGAGGLPSHEAFLLGAMAKTIS
TLITYPLQRAKVKGRGGGGGG
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mRNA from alignment at H-elongata_contig75669:2654..3016-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75669.15254.1 ID=mRNA_H-elongata_contig75669.15254.1|Name=mRNA_H-elongata_contig75669.15254.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=363bp|location=Sequence derived from alignment at H-elongata_contig75669:2654..3016- (Himanthalia elongata Himel1 dioecious)
TCCCTCGAAAGGAACGAGGGTCTCGCGGGGCTCTGGTCGGGAACGGCCCC GTCTCTAGTCCTGGTGTCAAATCCCATCATACAGTTCGTCGCGTACGAGG CGCTCAAGCAGGCTGCGGGGAACCGTCGCCTCCGCCGACATAGCAGCAGG CCTTGCAGCGTCGCCGATCCCCGGACTTCGGGATCGGTGGTTCACCCGAG CACCGCCGGGGCATCGTCGCGGGCGGGGGCGGGGGGCGGGGCGGGGGGGT TGCCGAGCCACGAGGCGTTTTTGCTTGGGGCGATGGCCAAGACGATCTCG ACGCTTATCACGTATCCGCTGCAGCGGGCCAAGGTTAAGGGGCGAGGGGG GGGGGGCGGGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig75669:2654..3016-

>mRNA_H-elongata_contig75669.15254.1 ID=mRNA_H-elongata_contig75669.15254.1|Name=mRNA_H-elongata_contig75669.15254.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig75669:2654..3016- (Himanthalia elongata Himel1 dioecious)
TCCCTCGAAAGGAACGAGGGTCTCGCGGGGCTCTGGTCGGGAACGGCCCC
GTCTCTAGTCCTGGTGTCAAATCCCATCATACAGTTCGTCGCGTACGAGG
CGCTCAAGCAGGCTGCGGGGAACCGTCGCCTCCGCCGACATAGCAGCAGG
CCTTGCAGCGTCGCCGATCCCCGGACTTCGGGATCGGTGGTTCACCCGAG
CACCGCCGGGGCATCGTCGCGGGCGGGGGCGGGGGGCGGGGCGGGGGGGT
TGCCGAGCCACGAGGCGTTTTTGCTTGGGGCGATGGCCAAGACGATCTCG
ACGCTTATCACGTATCCGCTGCAGCGGGCCAAGGTTAAGGGGCGAGGGGG
GGGGGGCGGGGGCTCCCTCGAAAGGAACGAGGGTCTCGCGGGGCTCTGGT
CGGGAACGGCCCCGTCTCTAGTCCTGGTGTCAAATCCCATCATACAGTTC
GTCGCGTACGAGGCGCTCAAGCAGGCTGCGGGGAACCGTCGCCTCCGCCG
ACATAGCAGCAGGCCTTGCAGCGTCGCCGATCCCCGGACTTCGGGATCGG
TGGTTCACCCGAGCACCGCCGGGGCATCGTCGCGGGCGGGGGCGGGGGGC
GGGGCGGGGGGGTTGCCGAGCCACGAGGCGTTTTTGCTTGGGGCGATGGC
CAAGACGATCTCGACGCTTATCACGTATCCGCTGCAGCGGGCCAAGGTTA
AGGGGCGAGGGGGGGGGGGCGGGGGC
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