mRNA_H-elongata_contig75661.15249.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75661.15249.1
Unique NamemRNA_H-elongata_contig75661.15249.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig75661.15249.1 vs. uniprot
Match: D7FLD8_ECTSI (Mitochondrial import inner membrane translocase TIM14 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLD8_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.110e-15
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    7 QDSHRRILMINHPDKGGSKYMAAKINEAKEMLLKGRE 117
            +DSHRRILMINHPDKGGSKYMAAKINEAKE+LLKGR+
Sbjct:  173 KDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGRK 209
[Close]
BLAST of mRNA_H-elongata_contig75661.15249.1 vs. uniprot
Match: UPI000CEADFDF (LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 15 n=1 Tax=Salvelinus alpinus TaxID=8036 RepID=UPI000CEADFDF)

HSP 1 Score: 63.2 bits (152), Expect = 7.290e-12
Identity = 26/37 (70.27%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    7 QDSHRRILMINHPDKGGSKYMAAKINEAKEMLLKGRE 117
            +D+HRRI+++NHPDKGGS YMAAKINEAK++L KG++
Sbjct:   65 RDAHRRIMVLNHPDKGGSPYMAAKINEAKDLLDKGQQ 101
[Close]
BLAST of mRNA_H-elongata_contig75661.15249.1 vs. uniprot
Match: A0A835YPD5_9STRA (Mitochondrial import inner membrane translocase TIM14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPD5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.620e-12
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    7 QDSHRRILMINHPDKGGSKYMAAKINEAKEMLLKGRE 117
            +D+HRRILM+NHPD+GGS YMA KIN AKE+LLKG+E
Sbjct:  203 KDAHRRILMLNHPDRGGSTYMAGKINAAKEILLKGKE 239
[Close]
BLAST of mRNA_H-elongata_contig75661.15249.1 vs. uniprot
Match: A0A7S2JUU2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUU2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.430e-11
Identity = 27/37 (72.97%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    7 QDSHRRILMINHPDKGGSKYMAAKINEAKEMLLKGRE 117
            +D+HR+IL++NHPD GGS YMA+KINEAKE+LLKG+E
Sbjct:  200 KDAHRKILILNHPDTGGSTYMASKINEAKELLLKGKE 236
[Close]
BLAST of mRNA_H-elongata_contig75661.15249.1 vs. uniprot
Match: A0A1S3PPB5_SALSA (dnaJ homolog subfamily C member 15 n=2 Tax=Salmo salar TaxID=8030 RepID=A0A1S3PPB5_SALSA)

HSP 1 Score: 63.2 bits (152), Expect = 1.900e-11
Identity = 26/37 (70.27%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    7 QDSHRRILMINHPDKGGSKYMAAKINEAKEMLLKGRE 117
            +D+HRRI+++NHPDKGGS YMAAKINEAK++L KG++
Sbjct:  108 RDAHRRIMVLNHPDKGGSPYMAAKINEAKDLLDKGQQ 144
[Close]
BLAST of mRNA_H-elongata_contig75661.15249.1 vs. uniprot
Match: K8Z3F4_NANGC (Chaperone-domain containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3F4_NANGC)

HSP 1 Score: 64.3 bits (155), Expect = 2.610e-11
Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    7 QDSHRRILMINHPDKGGSKYMAAKINEAKEMLLKGR 114
            +++HRRILM+NHPD GGS Y+A+KINEAKE+LLKGR
Sbjct:  194 KEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGR 229
[Close]
BLAST of mRNA_H-elongata_contig75661.15249.1 vs. uniprot
Match: A0A4W5L9W0_9TELE (DnaJ (Hsp40) homolog, subfamily C, member 15 n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5L9W0_9TELE)

HSP 1 Score: 63.2 bits (152), Expect = 2.740e-11
Identity = 26/37 (70.27%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    7 QDSHRRILMINHPDKGGSKYMAAKINEAKEMLLKGRE 117
            +D+HRRI+++NHPDKGGS YMAAKINEAK++L KG++
Sbjct:  127 RDAHRRIMVLNHPDKGGSPYMAAKINEAKDLLDKGQQ 163
[Close]
BLAST of mRNA_H-elongata_contig75661.15249.1 vs. uniprot
Match: A0A7S2WUN9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUN9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.920e-11
Identity = 27/35 (77.14%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:   13 SHRRILMINHPDKGGSKYMAAKINEAKEMLLKGRE 117
            +HRR+L+ NHPD+GGS YMAAKINEAKE+LLKG+E
Sbjct:  202 AHRRVLIANHPDRGGSPYMAAKINEAKELLLKGKE 236
[Close]
BLAST of mRNA_H-elongata_contig75661.15249.1 vs. uniprot
Match: A0A4P9WA22_9FUNG (J domain-containing protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WA22_9FUNG)

HSP 1 Score: 60.8 bits (146), Expect = 6.350e-11
Identity = 25/36 (69.44%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    7 QDSHRRILMINHPDKGGSKYMAAKINEAKEMLLKGR 114
            +D+HRRI+M+NHPD GGS Y+A+KINEAK++L KGR
Sbjct:   69 KDAHRRIMMLNHPDLGGSPYLASKINEAKDLLEKGR 104
[Close]
BLAST of mRNA_H-elongata_contig75661.15249.1 vs. uniprot
Match: UPI001131872E (mitochondrial import inner membrane translocase subunit TIM14-like n=1 Tax=Salmo trutta TaxID=8032 RepID=UPI001131872E)

HSP 1 Score: 59.7 bits (143), Expect = 9.240e-11
Identity = 24/37 (64.86%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    7 QDSHRRILMINHPDKGGSKYMAAKINEAKEMLLKGRE 117
            +D+HRRI+++NHPDKGGS +MA KINEAK++L KG++
Sbjct:   40 RDAHRRIMVLNHPDKGGSPHMATKINEAKDLLDKGQQ 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75661.15249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLD8_ECTSI2.110e-1591.89Mitochondrial import inner membrane translocase TI... [more]
UPI000CEADFDF7.290e-1270.27LOW QUALITY PROTEIN: dnaJ homolog subfamily C memb... [more]
A0A835YPD5_9STRA7.620e-1275.68Mitochondrial import inner membrane translocase TI... [more]
A0A7S2JUU2_9STRA1.430e-1172.97Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1S3PPB5_SALSA1.900e-1170.27dnaJ homolog subfamily C member 15 n=2 Tax=Salmo s... [more]
K8Z3F4_NANGC2.610e-1175.00Chaperone-domain containing protein n=1 Tax=Nannoc... [more]
A0A4W5L9W0_9TELE2.740e-1170.27DnaJ (Hsp40) homolog, subfamily C, member 15 n=1 T... [more]
A0A7S2WUN9_9STRA2.920e-1177.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4P9WA22_9FUNG6.350e-1169.44J domain-containing protein n=1 Tax=Blyttiomyces h... [more]
UPI001131872E9.240e-1164.86mitochondrial import inner membrane translocase su... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75661contigH-elongata_contig75661:631..750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog2880.D7FLD8
Preferred nameMDJ2
KEGG koko:K09535,ko:K09539
GOsGO:0001405,GO:0001671,GO:0002082,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0006140,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007154,GO:0008047,GO:0008104,GO:0008150,GO:0009267,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010563,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019866,GO:0030150,GO:0030234,GO:0031090,GO:0031323,GO:0031324,GO:0031333,GO:0031667,GO:0031668,GO:0031669,GO:0031966,GO:0031967,GO:0031975,GO:0032781,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0042325,GO:0042326,GO:0042594,GO:0042886,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043457,GO:0043462,GO:0043467,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0045934,GO:0045936,GO:0045980,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0060589,GO:0060590,GO:0062012,GO:0062014,GO:0065002,GO:0065007,GO:0065009,GO:0070585,GO:0070727,GO:0071496,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:0090324,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:1900542,GO:1900543,GO:1901856,GO:1902956,GO:1902957,GO:1903578,GO:1903579,GO:1905446,GO:1905447,GO:1990542
EggNOG free text desc.protein transport
EggNOG OGsCOG2214@1,KOG0723@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.921777-CDS-H-elongata_contig75661:630..7501622931161.921777-CDS-H-elongata_contig75661:630..750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75661 631..750 +
1691679723.611748-CDS-H-elongata_contig75661:630..7501691679723.611748-CDS-H-elongata_contig75661:630..750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75661 631..750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75661.15249.1prot_H-elongata_contig75661.15249.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75661 631..750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75661.15249.1

>prot_H-elongata_contig75661.15249.1 ID=prot_H-elongata_contig75661.15249.1|Name=mRNA_H-elongata_contig75661.15249.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MSQDSHRRILMINHPDKGGSKYMAAKINEAKEMLLKGRE*
back to top

mRNA from alignment at H-elongata_contig75661:631..750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75661.15249.1 ID=mRNA_H-elongata_contig75661.15249.1|Name=mRNA_H-elongata_contig75661.15249.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig75661:631..750+ (Himanthalia elongata Himel1 dioecious)
ATGTCACAGGATTCCCACAGAAGGATTCTAATGATCAATCACCCAGACAA
GGGCGGATCTAAGTACATGGCGGCTAAAATAAACGAGGCGAAGGAGATGC
TCCTAAAGGGAAGAGAGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig75661:631..750+

>mRNA_H-elongata_contig75661.15249.1 ID=mRNA_H-elongata_contig75661.15249.1|Name=mRNA_H-elongata_contig75661.15249.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig75661:631..750+ (Himanthalia elongata Himel1 dioecious)
ATGTCACAGGATTCCCACAGAAGGATTCTAATGATCAATCACCCAGACAA
GGGCGGATCTAAGTACATGGCGGCTAAAATAAACGAGGCGAAGGAGATGC
TCCTAAAGGGAAGAGAGTAGATGTCACAGGATTCCCACAGAAGGATTCTA
ATGATCAATCACCCAGACAAGGGCGGATCTAAGTACATGGCGGCTAAAAT
AAACGAGGCGAAGGAGATGCTCCTAAAGGGAAGAGAGTAG
back to top