mRNA_H-elongata_contig75660.15248.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75660.15248.1
Unique NamemRNA_H-elongata_contig75660.15248.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75660.15248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75660contigH-elongata_contig75660:2539..3029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size491
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.8823855-CDS-H-elongata_contig75660:2538..30271622931161.8823855-CDS-H-elongata_contig75660:2538..3027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75660 2539..3027 +
1691679723.5982053-CDS-H-elongata_contig75660:2538..30271691679723.5982053-CDS-H-elongata_contig75660:2538..3027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75660 2539..3027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75660.15248.1prot_H-elongata_contig75660.15248.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75660 2539..3027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75660.15248.1

>prot_H-elongata_contig75660.15248.1 ID=prot_H-elongata_contig75660.15248.1|Name=mRNA_H-elongata_contig75660.15248.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
GASGHAYQRIAEIRSFSSKNLSSDGLLIPTQASGHRHSYHGTAASTARWK
GQIILKTNGTASVNEVEQRGGAASVNSFSPRQNSSSLGNSLGELRFIVVQ
FKFRGFNGFREMGRQYGRAQIGRMACVLCRAIQSAMLGVFLPDDADATLT
FIMRPFGEIVGMS
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mRNA from alignment at H-elongata_contig75660:2539..3029+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75660.15248.1 ID=mRNA_H-elongata_contig75660.15248.1|Name=mRNA_H-elongata_contig75660.15248.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=491bp|location=Sequence derived from alignment at H-elongata_contig75660:2539..3029+ (Himanthalia elongata Himel1 dioecious)
GGCGCTTCAGGCCACGCCTACCAGAGGATCGCAGAGATTCGTTCTTTTTC
CTCCAAAAATCTATCGAGCGACGGGCTGCTCATTCCAACGCAAGCGTCAG
GCCACCGTCATTCATATCACGGTACGGCGGCCTCAACAGCGAGATGGAAA
GGTCAAATAATTTTGAAAACCAACGGTACGGCAAGCGTGAACGAGGTAGA
GCAGAGAGGCGGTGCGGCAAGCGTGAACAGTTTTTCGCCGCGGCAGAACA
GCAGCAGCCTTGGTAACAGCCTTGGGGAGCTTCGTTTCATTGTTGTCCAA
TTTAAGTTCAGAGGCTTCAATGGCTTTCGCGAAATGGGGAGACAGTACGG
TAGAGCCCAAATCGGTAGGATGGCTTGTGTTCTGTGTCGAGCTATACAGT
CGGCAATGTTGGGGGTGTTTTTACCCGACGACGCTGACGCTACGCTGACT
TTCATTATGCGTCCTTTTGGGGAGATTGTAGGAATGTCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig75660:2539..3029+

>mRNA_H-elongata_contig75660.15248.1 ID=mRNA_H-elongata_contig75660.15248.1|Name=mRNA_H-elongata_contig75660.15248.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig75660:2539..3029+ (Himanthalia elongata Himel1 dioecious)
GGCGCTTCAGGCCACGCCTACCAGAGGATCGCAGAGATTCGTTCTTTTTC
CTCCAAAAATCTATCGAGCGACGGGCTGCTCATTCCAACGCAAGCGTCAG
GCCACCGTCATTCATATCACGGTACGGCGGCCTCAACAGCGAGATGGAAA
GGTCAAATAATTTTGAAAACCAACGGTACGGCAAGCGTGAACGAGGTAGA
GCAGAGAGGCGGTGCGGCAAGCGTGAACAGTTTTTCGCCGCGGCAGAACA
GCAGCAGCCTTGGTAACAGCCTTGGGGAGCTTCGTTTCATTGTTGTCCAA
TTTAAGTTCAGAGGCTTCAATGGCTTTCGCGAAATGGGGAGACAGTACGG
TAGAGCCCAAATCGGTAGGATGGCTTGTGTTCTGTGTCGAGCTATACAGT
CGGCAATGTTGGGGGTGTTTTTACCCGACGACGCTGACGCTACGCTGACT
TTCATTATGCGTCCTTTTGGGGAGATTGTAGGAATGTCGGGCGCTTCAGG
CCACGCCTACCAGAGGATCGCAGAGATTCGTTCTTTTTCCTCCAAAAATC
TATCGAGCGACGGGCTGCTCATTCCAACGCAAGCGTCAGGCCACCGTCAT
TCATATCACGGTACGGCGGCCTCAACAGCGAGATGGAAAGGTCAAATAAT
TTTGAAAACCAACGGTACGGCAAGCGTGAACGAGGTAGAGCAGAGAGGCG
GTGCGGCAAGCGTGAACAGTTTTTCGCCGCGGCAGAACAGCAGCAGCCTT
GGTAACAGCCTTGGGGAGCTTCGTTTCATTGTTGTCCAATTTAAGTTCAG
AGGCTTCAATGGCTTTCGCGAAATGGGGAGACAGTACGGTAGAGCCCAAA
TCGGTAGGATGGCTTGTGTTCTGTGTCGAGCTATACAGTCGGCAATGTTG
GGGGTGTTTTTACCCGACGACGCTGACGCTACGCTGACTTTCATTATGCG
TCCTTTTGGGGAGATTGTAGGAATGTCG
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