mRNA_H-elongata_contig75614.15244.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75614.15244.1
Unique NamemRNA_H-elongata_contig75614.15244.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75614.15244.1 vs. uniprot
Match: D8LTN1_ECTSI (Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN1_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 5.460e-43
Identity = 74/81 (91.36%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:    1 ERLAAVAQEGGVKLTFFHGKGGTVSRGGNPAVYEAIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAVNTLDIYTAGVLHY 243
            ERLAAVA+E GVKLTFFHGKGGTVSRGGNPA+Y+AIMAQPRGT+NGHFRVTEQGEMITQNFGHPGIAVNTLDIYT+G+LHY
Sbjct:  625 ERLAAVAEEAGVKLTFFHGKGGTVSRGGNPALYQAIMAQPRGTLNGHFRVTEQGEMITQNFGHPGIAVNTLDIYTSGILHY 705
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BLAST of mRNA_H-elongata_contig75614.15244.1 vs. uniprot
Match: A0A097IUC8_9PHAE (Phosphoenolpyruvate carboxylase n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A097IUC8_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.020e-42
Identity = 73/81 (90.12%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:    1 ERLAAVAQEGGVKLTFFHGKGGTVSRGGNPAVYEAIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAVNTLDIYTAGVLHY 243
            E+LAAVA+E G++LTFFHGKGGTVSRGGNPA+Y+AIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAVNTLDIYTAG+LHY
Sbjct:  625 EKLAAVAEEAGIRLTFFHGKGGTVSRGGNPALYKAIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAVNTLDIYTAGILHY 705
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BLAST of mRNA_H-elongata_contig75614.15244.1 vs. uniprot
Match: A0A097IUD4_9PHAE (Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum TaxID=3015 RepID=A0A097IUD4_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 4.840e-42
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    1 ERLAAVAQEGGVKLTFFHGKGGTVSRGGNPAVYEAIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAVNTLDIYTAGVLHY 243
            ERLA VA++ GV+LTFFHGKGGTVSRGGNPA+YEAIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAVNTLD YTAG+LHY
Sbjct:  626 ERLAGVAEDAGVQLTFFHGKGGTVSRGGNPALYEAIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAVNTLDTYTAGILHY 706
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BLAST of mRNA_H-elongata_contig75614.15244.1 vs. uniprot
Match: A0A0A0V6T3_SACJA (Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A0A0V6T3_SACJA)

HSP 1 Score: 154 bits (388), Expect = 1.230e-41
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    1 ERLAAVAQEGGVKLTFFHGKGGTVSRGGNPAVYEAIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAVNTLDIYTAGVLHY 243
            ERLAAVA+   V+LTFFHGKGGTVSRGGNPA+Y+AIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIA+NTLDIYTAGVLHY
Sbjct:  625 ERLAAVAEASDVRLTFFHGKGGTVSRGGNPALYQAIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAINTLDIYTAGVLHY 705
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BLAST of mRNA_H-elongata_contig75614.15244.1 vs. uniprot
Match: A0A835YNR8_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.720e-31
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 1 
Query:    1 ERLAAVAQEGGVKLTFFHGKGGTVSRGGNPAVYEAIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAVNTLDIYTAGVL 237
            ERLA++A+   V+LTFFHGKGGTVSRGGNPA+Y+AI AQP GT+ G FRVTEQGEMITQNFG+ GIA  TLDIYTAGVL
Sbjct:  588 ERLASLAKAYNVQLTFFHGKGGTVSRGGNPALYQAITAQPPGTIQGRFRVTEQGEMITQNFGNAGIAERTLDIYTAGVL 666
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BLAST of mRNA_H-elongata_contig75614.15244.1 vs. uniprot
Match: A0A7S4VL67_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VL67_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.780e-30
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 ERLAAVAQEGGVKLTFFHGKGGTVSRGGNPAVYEAIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAVNTLDIYTAGVL 237
            E++  VA + GV+LTFFHGKGGTV RGGNPA+Y AI++ P  T+NG FRVTEQGEMITQNFG+P IA  TLDIYTA VL
Sbjct:   15 EKMVKVAAKHGVELTFFHGKGGTVGRGGNPALYRAILSHPPNTINGRFRVTEQGEMITQNFGNPAIAERTLDIYTAAVL 93
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BLAST of mRNA_H-elongata_contig75614.15244.1 vs. uniprot
Match: A0A7R9VXP4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VXP4_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.230e-30
Identity = 55/79 (69.62%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:    1 ERLAAVAQEGGVKLTFFHGKGGTVSRGGNPAVYEAIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAVNTLDIYTAGVL 237
            E +A VA   G++LTFFHGKGGTV RGGNPA+Y AI++ P  T+NG FRVTEQGEMITQNFG P IA  +LDIYTA VL
Sbjct:  117 EAMAKVAASSGIELTFFHGKGGTVGRGGNPALYRAILSHPPNTINGRFRVTEQGEMITQNFGSPAIAERSLDIYTAAVL 195
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BLAST of mRNA_H-elongata_contig75614.15244.1 vs. uniprot
Match: A0A7S2A7E1_TRICV (Phosphoenolpyruvate carboxylase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7E1_TRICV)

HSP 1 Score: 119 bits (297), Expect = 2.380e-29
Identity = 56/79 (70.89%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:    1 ERLAAVAQEGGVKLTFFHGKGGTVSRGGNPAVYEAIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAVNTLDIYTAGVL 237
            E ++ VA+E G++LTFFHGKGGTV RGGNPA+Y AI++ P  T+NG FRVTEQGEMITQNFG+P IA  TLDIYTA VL
Sbjct:  542 ESMSKVAEEAGIELTFFHGKGGTVGRGGNPALYRAILSHPPRTINGRFRVTEQGEMITQNFGNPAIAERTLDIYTAAVL 620
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BLAST of mRNA_H-elongata_contig75614.15244.1 vs. uniprot
Match: A0A7S4UUF1_9STRA (Phosphoenolpyruvate carboxylase n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UUF1_9STRA)

HSP 1 Score: 117 bits (293), Expect = 8.310e-29
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 ERLAAVAQEGGVKLTFFHGKGGTVSRGGNPAVYEAIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAVNTLDIYTAGVL 237
            E++  VA + GV+LTFFHGKGGTV RGGNPA+Y AI++ P  T+NG FRVTEQGEMITQNFG+P IA  TLDIYTA VL
Sbjct:  692 EKMVKVAAKHGVELTFFHGKGGTVGRGGNPALYRAILSHPPNTINGRFRVTEQGEMITQNFGNPAIAERTLDIYTAAVL 770
[Close]
BLAST of mRNA_H-elongata_contig75614.15244.1 vs. uniprot
Match: A0A7S2CUJ2_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CUJ2_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.130e-28
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:    1 ERLAAVAQEGGVKLTFFHGKGGTVSRGGNPAVYEAIMAQPRGTVNGHFRVTEQGEMITQNFGHPGIAVNTLDIYTAGVLHYR 246
            E+LAA A + G+ LTFFHGKGGTVSRGG+P+VY AI AQP  TVNG FR+TEQGE+ITQN+ HP IA   LD+YTA +L+ R
Sbjct:  631 EKLAAAASKHGINLTFFHGKGGTVSRGGDPSVYRAIAAQPHDTVNGRFRITEQGEVITQNYAHPAIAKRHLDVYTAALLNER 712
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75614.15244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTN1_ECTSI5.460e-4391.36Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus... [more]
A0A097IUC8_9PHAE1.020e-4290.12Phosphoenolpyruvate carboxylase n=2 Tax=Scytosipho... [more]
A0A097IUD4_9PHAE4.840e-4290.12Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum ... [more]
A0A0A0V6T3_SACJA1.230e-4190.12Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina... [more]
A0A835YNR8_9STRA5.720e-3177.22Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema ... [more]
A0A7S4VL67_9STRA5.780e-3070.89Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7R9VXP4_9STRA6.230e-3069.62Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2A7E1_TRICV2.380e-2970.89Phosphoenolpyruvate carboxylase n=1 Tax=Trieres ch... [more]
A0A7S4UUF1_9STRA8.310e-2970.89Phosphoenolpyruvate carboxylase n=4 Tax=Ditylum br... [more]
A0A7S2CUJ2_9STRA1.130e-2867.07Phosphoenolpyruvate carboxylase n=1 Tax=Dictyocha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75614contigH-elongata_contig75614:1144..2783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue1.5e-36
Seed eggNOG ortholog2880.D8LTN1
KEGG rclassRC02741
KEGG koko:K01595
KEGG ReactionR00345
KEGG Pathwayko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200
KEGG ModuleM00168,M00170,M00171,M00172,M00173,M00346,M00374
EggNOG free text desc.phosphoenolpyruvate carboxylase activity
EggNOG OGs2QPVS@2759,COG2352@1
EC4.1.1.31
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.5263844-CDS-H-elongata_contig75614:1143..12451622931161.5263844-CDS-H-elongata_contig75614:1143..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75614 1144..1245 +
1691679723.509139-CDS-H-elongata_contig75614:1143..12451691679723.509139-CDS-H-elongata_contig75614:1143..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75614 1144..1245 +
1622931161.5464454-CDS-H-elongata_contig75614:2636..27831622931161.5464454-CDS-H-elongata_contig75614:2636..2783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75614 2637..2783 +
1691679723.5195417-CDS-H-elongata_contig75614:2636..27831691679723.5195417-CDS-H-elongata_contig75614:2636..2783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75614 2637..2783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75614.15244.1prot_H-elongata_contig75614.15244.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75614 1144..2783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75614.15244.1

>prot_H-elongata_contig75614.15244.1 ID=prot_H-elongata_contig75614.15244.1|Name=mRNA_H-elongata_contig75614.15244.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
ERLAAVAQEGGVKLTFFHGKGGTVSRGGNPAVYEAIMAQPRGTVNGHFRV
TEQGEMITQNFGHPGIAVNTLDIYTAGVLHYR*
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mRNA from alignment at H-elongata_contig75614:1144..2783+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75614.15244.1 ID=mRNA_H-elongata_contig75614.15244.1|Name=mRNA_H-elongata_contig75614.15244.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1640bp|location=Sequence derived from alignment at H-elongata_contig75614:1144..2783+ (Himanthalia elongata Himel1 dioecious)
GAGAGGCTTGCGGCAGTCGCACAAGAGGGAGGCGTGAAGCTAACGTTCTT
CCACGGGAAGGGCGGGACTGTCAGTCGCGGTGGAAACCCCGCGGTATACG
AGGTGAGAGAGAAACTCGAGCAGTTATAAAAATATGAAATATATAAATGT
GCCGGTGTCTTAACGACGGCACCAAGATGATTCAAGATGGGTGCTTCCAA
TATCCAACTTTAGCTGCAATTGGCCAATGTAATGTCGCCAGCACGTTCGA
CTACACCAAGAACTGAATTAATGTTGAAACCAGCTCCCGGCCCCATCCAG
GGTAGGTATTTTAAGCTTTAAATCCCTGTCGTCCAACTTTGGTCGGTCCC
TTCCGCCGATCATTAGCCTTTGTTGCATACTGTAGCGAAAATGGAGTACC
ATAAATAAACGGATGACAGCTAGGGCCACAGCTGCGAGATAGCATGCGGC
GGCCGGGTGTTGCGCCCTCCCGGCGCGTGACATTAATATCACTATTATAG
AAGGGGTAGGGAACTGTAGACAGGAAAGCGATGTAGAAGACAGATGCTAC
TCTCGCATTGGTTCTCAATGGTAGGGATCAATAATATTTTCTACAAAAAC
CTCTGATCAGACGTGACAAAAGGGAATATTCTTTACTGTTTAGTGTCTTT
TGTGTTCTAACATCGAAATTACTTGTACTATTTTTCCGACTTGGAGGTGC
AATTTCAATTTCGAAGTTGGATATTTAAGCTCCCGCTAAGACACGGCCTT
GTTGGCTGATGTTGAGCACGGTAGTGATTAGTGCAATTTTTTTAATTGTG
TATTTTAAAAATGATATGCGCATAGTCTAGAGCCTCTATTTTTTGTTTGT
TTTGTATTTCTTTAATTTGACATTTACTTCATAGTTTAACCTTTTAATAC
TAAAAATATACTTTTTCAAACATTTTTTTCCCGTCACTTCTTGGTTCTGT
TACCTTTTTCTTCTTTTTATTTCTCGGGTTTATTTTTACATTTTTACTAC
CACCCCTGAGACAAGCTTGTCACATACTGGAGGTGGTTTTTGGCAGAACG
CCTCCCTCGGGGAAGGGGGGAAGGGGGCAGGGAGATCACCGCGCGATATT
CCCGGCAATCACCGCGGTACTCCCTACTAATAACAAGACTTATACTAATC
CCTGTAACATAGTCAACACAAAGTGTTGGTTCGACGGCCAAGGTTCGAAA
TCCCACAACATCCAGTATTTGAGATTTGAAAATTGGTGAAAGAAATCAAA
TGCAATGCAAACGCGCGTGCGCATGATTAACCCCCATCCTGAGCACGCCT
CCGTTCTACCTCCCGAGGACGCGTGGTGAAAGACGCCACCCCCCTCTCCC
TTTATCTCCTCATCCTGGCATAATTAAATAAAATCGTCTGCGTTCTACCC
GCGTGTGCCTTTTCTTTCTTTTTTTTGCCACTCTCTCCTTTCTCCTCGTT
ACCCCCTCCCCCCGGGGGTTTTACGATGTAATTCGGCGTGAAGGCTATCA
TGGCCCAGCCCAGAGGAACGGTGAACGGCCACTTCCGTGTGACCGAACAG
GGAGAGATGATCACGCAAAACTTTGGACACCCTGGAATCGCGGTGAACAC
GCTGGACATTTACACCGCCGGGGTTTTGCACTACCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig75614:1144..2783+

>mRNA_H-elongata_contig75614.15244.1 ID=mRNA_H-elongata_contig75614.15244.1|Name=mRNA_H-elongata_contig75614.15244.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig75614:1144..2783+ (Himanthalia elongata Himel1 dioecious)
GAGAGGCTTGCGGCAGTCGCACAAGAGGGAGGCGTGAAGCTAACGTTCTT
CCACGGGAAGGGCGGGACTGTCAGTCGCGGTGGAAACCCCGCGGTATACG
AGGAGAGGCTTGCGGCAGTCGCACAAGAGGGAGGCGTGAAGCTAACGTTC
TTCCACGGGAAGGGCGGGACTGTCAGTCGCGGTGGAAACCCCGCGGTATA
CGAGGCTATCATGGCCCAGCCCAGAGGAACGGTGAACGGCCACTTCCGTG
TGACCGAACAGGGAGAGATGATCACGCAAAACTTTGGACACCCTGGAATC
GCGGTGAACACGCTGGACATTTACACCGCCGGGGTTTTGCACTACCGGTG
AGCTATCATGGCCCAGCCCAGAGGAACGGTGAACGGCCACTTCCGTGTGA
CCGAACAGGGAGAGATGATCACGCAAAACTTTGGACACCCTGGAATCGCG
GTGAACACGCTGGACATTTACACCGCCGGGGTTTTGCACTACCGGTGA
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