mRNA_H-elongata_contig75546.15240.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75546.15240.1
Unique NamemRNA_H-elongata_contig75546.15240.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75546.15240.1 vs. uniprot
Match: A0A6H5L2L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.680e-11
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 3 
Query:  333 AIGVREHGFNYAVDRVKQLKADLHPVEAMKHGVYWFWPRA 452
            A+GVREH FN+AV+R K L +DL+P EA+K GVYWFWPRA
Sbjct:   23 ALGVREHDFNFAVERAKNLLSDLYPTEAIKRGVYWFWPRA 62
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BLAST of mRNA_H-elongata_contig75546.15240.1 vs. uniprot
Match: A0A6H5LEY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEY9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.740e-10
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  333 AIGVREHGFNYAVDRVKQLKADLHPVEAMKHGVYWFWPRA 452
            A+GVREH FN AV+R K L + LHP EA+K GVYWFWPRA
Sbjct:  249 ALGVREHAFNSAVERAKNLLSGLHPTEAIKRGVYWFWPRA 288
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BLAST of mRNA_H-elongata_contig75546.15240.1 vs. uniprot
Match: A0A6H5JAR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.090e-10
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 3 
Query:  330 AAIGVREHGFNYAVDRVKQLKADLHPVEAMKHGVYWFWPRA 452
            AA+GVRE  FN+A +R K+L +DL P EA+K GVYWFWPRA
Sbjct:   49 AALGVREQAFNFATERAKKLLSDLQPTEAIKRGVYWFWPRA 89
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BLAST of mRNA_H-elongata_contig75546.15240.1 vs. uniprot
Match: A0A6H5KHT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT7_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.180e-10
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 3 
Query:  330 AAIGVREHGFNYAVDRVKQLKADLHPVEAMKHGVYWFWPRA 452
            AA+ VRE  FN+A +R K+L +DL P EA+KHGVYWFWPRA
Sbjct:  249 AALDVREQAFNFAAERAKKLLSDLQPTEAIKHGVYWFWPRA 289
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BLAST of mRNA_H-elongata_contig75546.15240.1 vs. uniprot
Match: A0A6H5K847_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K847_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.440e-10
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  333 AIGVREHGFNYAVDRVKQLKADLHPVEAMKHGVYWFWPRA 452
            A+GVR+  FN AV+R K L +DLHP EA+K GVYWFWPRA
Sbjct:  410 ALGVRQRAFNSAVERAKNLLSDLHPTEAIKRGVYWFWPRA 449
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BLAST of mRNA_H-elongata_contig75546.15240.1 vs. uniprot
Match: A0A6H5JQ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ62_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.670e-9
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 3 
Query:  321 RPNAAIGVREHGFNYAVDRVKQLKADLHPVEAMKHGVYWFWPRA 452
            R  AA+GVRE  FN+A +  K+L +DL P EA+K GVYWFWPRA
Sbjct:   64 RTAAALGVREQAFNFAAEPAKKLLSDLQPTEAIKRGVYWFWPRA 107
[Close]
BLAST of mRNA_H-elongata_contig75546.15240.1 vs. uniprot
Match: A0A6H5L293_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L293_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.130e-9
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 3 
Query:  330 AAIGVREHGFNYAVDRVKQLKADLHPVEAMKHGVYWFWPRA 452
            AA+GVRE  FN+A +R K++ +D  P EA+K GVYWFWPRA
Sbjct:   88 AALGVREQAFNFAAERAKKMLSDRQPTEAIKRGVYWFWPRA 128
[Close]
BLAST of mRNA_H-elongata_contig75546.15240.1 vs. uniprot
Match: A0A6H5JA27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA27_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 5.370e-9
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 3 
Query:  333 AIGVREHGFNYAVDRVKQLKADLHPVEAMKHGVYWFWPRA 452
            A+G+R+H FN AV+R K   +DL P EA+K GVYWFWPRA
Sbjct:  127 ALGIRQHAFNSAVERAKNSLSDLDPTEAIKRGVYWFWPRA 166
[Close]
BLAST of mRNA_H-elongata_contig75546.15240.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.460e-8
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 3 
Query:  330 AAIGVREHGFNYAVDRVKQLKADLHPVEAMKHGVYWFWPRA 452
            A +GV++  F +AV+R K+L +DL+P EA+K GVYWFWPRA
Sbjct:  225 AVLGVQKRAFTFAVERAKKLLSDLNPTEAIKRGVYWFWPRA 265
[Close]
BLAST of mRNA_H-elongata_contig75546.15240.1 vs. uniprot
Match: A0A6H5J7C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.730e-6
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 3 
Query:  333 AIGVREHGFNYAVDRVKQLKADLHPVEAMKHGVYWFWPRA 452
            A+ VR+H FN AV+R K L +DL P EA+K GVYWF PRA
Sbjct:  127 ALRVRQHAFNSAVERAKNLLSDLDPTEAIKCGVYWFRPRA 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75546.15240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5L2L6_9PHAE3.680e-1170.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LEY9_9PHAE1.740e-1070.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR5_9PHAE2.090e-1065.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHT7_9PHAE3.180e-1065.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K847_9PHAE5.440e-1067.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ62_9PHAE2.670e-961.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L293_9PHAE5.130e-960.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA27_9PHAE5.370e-962.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI10_9PHAE2.460e-858.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7C0_9PHAE1.730e-662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75546contigH-elongata_contig75546:414..1565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size452
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75546.15240.1prot_H-elongata_contig75546.15240.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75546 454..704 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.0345955-UTR-H-elongata_contig75546:413..4531622931161.0345955-UTR-H-elongata_contig75546:413..453Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75546 414..453 -
1691679723.353953-UTR-H-elongata_contig75546:413..4531691679723.353953-UTR-H-elongata_contig75546:413..453Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75546 414..453 -
1622931161.086113-UTR-H-elongata_contig75546:704..8121622931161.086113-UTR-H-elongata_contig75546:704..812Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75546 705..812 -
1691679723.3948402-UTR-H-elongata_contig75546:704..8121691679723.3948402-UTR-H-elongata_contig75546:704..812Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75546 705..812 -
1622931161.0994406-UTR-H-elongata_contig75546:1498..15651622931161.0994406-UTR-H-elongata_contig75546:1498..1565Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75546 1499..1565 -
1691679723.4050004-UTR-H-elongata_contig75546:1498..15651691679723.4050004-UTR-H-elongata_contig75546:1498..1565Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75546 1499..1565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.052066-CDS-H-elongata_contig75546:453..6571622931161.052066-CDS-H-elongata_contig75546:453..657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75546 454..657 -
1691679723.3633113-CDS-H-elongata_contig75546:453..6571691679723.3633113-CDS-H-elongata_contig75546:453..657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75546 454..657 -
1622931161.0703063-CDS-H-elongata_contig75546:671..7041622931161.0703063-CDS-H-elongata_contig75546:671..704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75546 672..704 -
1691679723.381322-CDS-H-elongata_contig75546:671..7041691679723.381322-CDS-H-elongata_contig75546:671..704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75546 672..704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75546.15240.1

>prot_H-elongata_contig75546.15240.1 ID=prot_H-elongata_contig75546.15240.1|Name=mRNA_H-elongata_contig75546.15240.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MQDLEAKASVAKPLSRRRNKTEQRRRLERGKPVTAAALGRDVEEASTVSA
KRRDRGSRARLQLRGGPCQAVESRSPSS*
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mRNA from alignment at H-elongata_contig75546:414..1565-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75546.15240.1 ID=mRNA_H-elongata_contig75546.15240.1|Name=mRNA_H-elongata_contig75546.15240.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1152bp|location=Sequence derived from alignment at H-elongata_contig75546:414..1565- (Himanthalia elongata Himel1 dioecious)
CTGCGGGGTGGCGGAAGGACCCGATCTGGTGTGGTAACGAACGAACCATG
CGAGCAAGAGGTGAGATGTCATTCTCTAGAGACTTCCGCACTATTACTAT
TATTAGTACTATTACTGTATATCGTACCGGTACATCAGTTGGCATTTTGA
ATGTCGCCACTTGTACCCACACTACATCGTTGCCCCCCCCAGCTGTATCG
CTGATCACATTCTGTTACAGCATTACTTTTAACAGTATCACTCTCTCAGC
TGCAATACAATGCGGTAGGGTATCTGAAAATGTTTACCCTAACCCTAGAT
TTGCTGCCCCGGAACATGAAACCCTCTAGGCTGCCGGCAGAATTTACATG
CAGATATTTAACTAATTTTGACTTCTGTAAACGAAAACCATTAAAAAACT
GCTGCTCCAATGAGTGAAGAATGTGTGTCCAACATCACCAATACCATTCG
GATCTAGCATTATTACAACTAAAAAACATATAAACTCATTCCAACCCTCC
GAAGATCCACGCCTTCTTAGCACCATGGGAGGTGTAGTAGTGTAGTAATC
CAGGAGACCAACTAACTATCGCCAGGTTTGAATGTGGACATTTTATCGAC
ATTCAAGCTCAAAATCGTCATTATATATATTCTGCTCTTTAGTTTTACAT
CTTACAAATATAGACTATGGACGAAGTCGAAGTGCTGTGTGCTCCGCTCC
TCGCTGTGTACGCTAAACCCCCCCCCCCAACGTTGCACATATACGACACA
GAGAAAAACCGAAAATCTTCCTCTCTTCGATGGACAGCATGGGGGCGTCA
AACGCGCTGGCATTCATGGAAGCCAAAGGTTCGAAAAGCTGCCAAGGACA
TCCGGCAGCGCATGCAAGATCTGGAGGCTAAGGCGAGCGTGGCAGTTTTG
CTGGAGAGAAGCCATTGAGCAGGCGAAGAAACAAAACGGAACAAAGGAGG
AGATTGGAACGTGGCAAACCGGTTACCGCTGCGGCCTTGGGCAGAGACGT
GGAGGAGGCCTCAACGGTGTCGGCCAAACGCCGCGATCGGGGTTCGCGAG
CACGGCTTCAACTACGCGGTGGACCGTGTCAAGCAGTTGAAAGCCGATCT
CCATCCAGTTGAGGCGATGAAACACGGCGTCTACTGGTTCTGGCCCCGGG
CT
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Coding sequence (CDS) from alignment at H-elongata_contig75546:414..1565-

>mRNA_H-elongata_contig75546.15240.1 ID=mRNA_H-elongata_contig75546.15240.1|Name=mRNA_H-elongata_contig75546.15240.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig75546:414..1565- (Himanthalia elongata Himel1 dioecious)
ATGCAAGATCTGGAGGCTAAGGCGAGCGTGGCAATGCAAGATCTGGAGGC
TAAGGCGAGCGTGGCAAAGCCATTGAGCAGGCGAAGAAACAAAACGGAAC
AAAGGAGGAGATTGGAACGTGGCAAACCGGTTACCGCTGCGGCCTTGGGC
AGAGACGTGGAGGAGGCCTCAACGGTGTCGGCCAAACGCCGCGATCGGGG
TTCGCGAGCACGGCTTCAACTACGCGGTGGACCGTGTCAAGCAGTTGAAA
GCCGATCTCCATCCAGTTGAAAGCCATTGAGCAGGCGAAGAAACAAAACG
GAACAAAGGAGGAGATTGGAACGTGGCAAACCGGTTACCGCTGCGGCCTT
GGGCAGAGACGTGGAGGAGGCCTCAACGGTGTCGGCCAAACGCCGCGATC
GGGGTTCGCGAGCACGGCTTCAACTACGCGGTGGACCGTGTCAAGCAGTT
GAAAGCCGATCTCCATCCAGTTGA
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