mRNA_H-elongata_contig75534.15239.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI) HSP 1 Score: 169 bits (427), Expect = 1.840e-46 Identity = 86/103 (83.50%), Postives = 95/103 (92.23%), Query Frame = 1
Query: 1 DKRENLSRLLGEPPLDTGSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
DKR +LSRLL E PLD GSVVVYVWRQ TAEA+ ALL+G+GH+AV+YHGGMEAGARQ+AQ AF RGR+RVVVATVAFGLGVDMR+IRGVVHFDMPKSIENYVQ
Sbjct: 1563 DKRSSLSRLLQEAPLDKGSVVVYVWRQVTAEAVCALLQGDGHNAVAYHGGMEAGARQRAQNAFMRGRSRVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ 1665
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE) HSP 1 Score: 168 bits (426), Expect = 2.520e-46 Identity = 86/103 (83.50%), Postives = 94/103 (91.26%), Query Frame = 1
Query: 1 DKRENLSRLLGEPPLDTGSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
DKR LSRLL E PLD GSVVVYVWRQ TAEA+ ALL+G+GH+AV+YHGGMEAGARQ+AQ AF RGR+RVVVATVAFGLGVDMR+IRGVVHFDMPKSIENYVQ
Sbjct: 1709 DKRSRLSRLLQEAPLDKGSVVVYVWRQVTAEAVCALLQGDGHNAVAYHGGMEAGARQRAQNAFMRGRSRVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ 1811
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: A0A835Z8Q0_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q0_9STRA) HSP 1 Score: 117 bits (292), Expect = 2.860e-28 Identity = 57/102 (55.88%), Postives = 71/102 (69.61%), Query Frame = 1
Query: 4 KRENLSRLLGEPPLDTGSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
KR L L+ +P G+ +VYVWRQ +AE + L+ EGH A +YH GM+AG R K QAAF R R RV+VATVAFGLGVDM +R V+H+D P S+E YVQ
Sbjct: 190 KRRVLRALMAQPAFGDGACIVYVWRQVSAEVVAEFLQSEGHSAAAYHAGMDAGERAKVQAAFMRRRVRVMVATVAFGLGVDMACVRAVIHYDAPSSLEGYVQ 291
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: W7TAC7_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAC7_9STRA) HSP 1 Score: 100 bits (248), Expect = 2.560e-22 Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 1
Query: 4 KRENLSRLLGEPPLDTGSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTR-------GRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
KR ++ LL P D GSV+VYV +Q AE L L EG AV+YH GM+ R AQ A+ R GRARV VAT+AFGLGVD ++R V+H++MPKS+EN VQ
Sbjct: 1232 KRRHILNLLSNAPYDQGSVIVYVRQQKDAEILKDFLVSEGQSAVAYHAGMDMRHRDMAQGAWMRRRITGSGGRARVCVATIAFGLGVDKGDVRAVLHYEMPKSVENLVQ 1340
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: A0A7Y7AW24_9GAMM (RecQ family ATP-dependent DNA helicase (Fragment) n=2 Tax=Oceanospirillaceae TaxID=135620 RepID=A0A7Y7AW24_9GAMM) HSP 1 Score: 97.8 bits (242), Expect = 1.460e-21 Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 1
Query: 1 DKRENLSRLLGEPPLDTGSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
+K L+++LGE G+ +VYV +Q TAE + L+ GH AV+YH G+ + R QA F + R++VAT+AFG+G+D +IR VVHFD+PKSIENY Q
Sbjct: 220 EKLSTLNKILGETQ---GASIVYVTQQKTAEEIAQALQASGHSAVAYHAGLNSDVRSAIQADFMASKTRIIVATIAFGMGIDKSDIRLVVHFDLPKSIENYSQ 319
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: A0A6G0XI93_9STRA (DNA helicase n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI93_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 3.010e-21 Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 1 DKRENLSRLLGEPPLDTGSVVVYVWRQATAEALGALLRGEGH-DAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
D+ L +LL PPL GSV+VYV Q A + LL +G A +YH G++A ++K Q F G+ RVVVAT+AFG+G+D +RGVVH+ MP S+E+YVQ
Sbjct: 578 DRYMALRKLLSTPPLSKGSVIVYVHTQYAASQVAGLLASDGAIKASAYHAGLDADIKEKVQKGFASGKIRVVVATIAFGMGIDKANVRGVVHYHMPSSMEHYVQ 681
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: A0A7S2PT99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PT99_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 3.720e-21 Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 1
Query: 43 LDTGSVVVYVWRQATAEALGALLRGEGHDA--VSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
L TGS+++YVWR+ AEAL + G G + V YHGGM+AG R AQ F RG+AR+ VATVAFGLG+D ++ VVH +P+S E+Y+Q
Sbjct: 88 LQTGSIIIYVWRKRDAEALAEQISGAGVEGGVVFYHGGMDAGQRAVAQGKFMRGKARICVATVAFGLGIDKPDVYAVVHMCIPQSPEHYLQ 178
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: A0A8J1ZBZ7_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1ZBZ7_9DINO) HSP 1 Score: 96.7 bits (239), Expect = 4.180e-21 Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 52 GSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
G ++VYVWR+AT AL LL G G + V YH + A R + Q FT+ R RV+V T+AFG+G+D +I+GV+H+DMPKS+EN+VQ
Sbjct: 1015 GPILVYVWRRATVTALARLLSGRGVNCVGYHSSLAAEDRDRFQKEFTQNRIRVLVTTIAFGMGIDKPDIQGVIHYDMPKSLENFVQ 1100
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: A0A8J1YWN9_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1YWN9_9DINO) HSP 1 Score: 96.7 bits (239), Expect = 4.210e-21 Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 52 GSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
GSV+VYVWR+ T AL LL G G AV YH + A R + Q FT R RV+V T+AFG+G+D +I+GV+H+DMPKS+EN+VQ
Sbjct: 1367 GSVLVYVWRRKTVTALAKLLGGRGVQAVGYHSALSAEDRDRFQKEFTVNRIRVMVTTIAFGMGIDKPDIQGVIHYDMPKSLENFVQ 1452
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: UPI00190543CC (RecQ family ATP-dependent DNA helicase n=1 Tax=Roseibacillus ishigakijimensis TaxID=454146 RepID=UPI00190543CC) HSP 1 Score: 95.9 bits (237), Expect = 7.400e-21 Identity = 45/86 (52.33%), Postives = 63/86 (73.26%), Query Frame = 1
Query: 52 GSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
G+++VYV Q TAE + LL+ GH A +YH GM A AR++ Q+ F R+VVAT+AFG+G+D IRGVVH+++PK++ENYVQ
Sbjct: 240 GALIVYVTLQQTAETVAGLLQRAGHSARAYHAGMRAEAREEVQSGFMNDEVRIVVATIAFGMGIDKGNIRGVVHYNLPKTLENYVQ 325 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig75534.15239.1 >prot_H-elongata_contig75534.15239.1 ID=prot_H-elongata_contig75534.15239.1|Name=mRNA_H-elongata_contig75534.15239.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp DKRENLSRLLGEPPLDTGSVVVYVWRQATAEALGALLRGEGHDAVSYHGGback to top mRNA from alignment at H-elongata_contig75534:1913..2230+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig75534.15239.1 ID=mRNA_H-elongata_contig75534.15239.1|Name=mRNA_H-elongata_contig75534.15239.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig75534:1913..2230+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig75534:1913..2230+ >mRNA_H-elongata_contig75534.15239.1 ID=mRNA_H-elongata_contig75534.15239.1|Name=mRNA_H-elongata_contig75534.15239.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig75534:1913..2230+ (Himanthalia elongata Himel1 dioecious)back to top |