mRNA_H-elongata_contig75534.15239.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75534.15239.1
Unique NamemRNA_H-elongata_contig75534.15239.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.840e-46
Identity = 86/103 (83.50%), Postives = 95/103 (92.23%), Query Frame = 1
Query:    1 DKRENLSRLLGEPPLDTGSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
            DKR +LSRLL E PLD GSVVVYVWRQ TAEA+ ALL+G+GH+AV+YHGGMEAGARQ+AQ AF RGR+RVVVATVAFGLGVDMR+IRGVVHFDMPKSIENYVQ
Sbjct: 1563 DKRSSLSRLLQEAPLDKGSVVVYVWRQVTAEAVCALLQGDGHNAVAYHGGMEAGARQRAQNAFMRGRSRVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ 1665          
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 2.520e-46
Identity = 86/103 (83.50%), Postives = 94/103 (91.26%), Query Frame = 1
Query:    1 DKRENLSRLLGEPPLDTGSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
            DKR  LSRLL E PLD GSVVVYVWRQ TAEA+ ALL+G+GH+AV+YHGGMEAGARQ+AQ AF RGR+RVVVATVAFGLGVDMR+IRGVVHFDMPKSIENYVQ
Sbjct: 1709 DKRSRLSRLLQEAPLDKGSVVVYVWRQVTAEAVCALLQGDGHNAVAYHGGMEAGARQRAQNAFMRGRSRVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ 1811          
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: A0A835Z8Q0_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q0_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.860e-28
Identity = 57/102 (55.88%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    4 KRENLSRLLGEPPLDTGSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
            KR  L  L+ +P    G+ +VYVWRQ +AE +   L+ EGH A +YH GM+AG R K QAAF R R RV+VATVAFGLGVDM  +R V+H+D P S+E YVQ
Sbjct:  190 KRRVLRALMAQPAFGDGACIVYVWRQVSAEVVAEFLQSEGHSAAAYHAGMDAGERAKVQAAFMRRRVRVMVATVAFGLGVDMACVRAVIHYDAPSSLEGYVQ 291          
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: W7TAC7_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAC7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.560e-22
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    4 KRENLSRLLGEPPLDTGSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTR-------GRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
            KR ++  LL   P D GSV+VYV +Q  AE L   L  EG  AV+YH GM+   R  AQ A+ R       GRARV VAT+AFGLGVD  ++R V+H++MPKS+EN VQ
Sbjct: 1232 KRRHILNLLSNAPYDQGSVIVYVRQQKDAEILKDFLVSEGQSAVAYHAGMDMRHRDMAQGAWMRRRITGSGGRARVCVATIAFGLGVDKGDVRAVLHYEMPKSVENLVQ 1340          
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: A0A7Y7AW24_9GAMM (RecQ family ATP-dependent DNA helicase (Fragment) n=2 Tax=Oceanospirillaceae TaxID=135620 RepID=A0A7Y7AW24_9GAMM)

HSP 1 Score: 97.8 bits (242), Expect = 1.460e-21
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    1 DKRENLSRLLGEPPLDTGSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
            +K   L+++LGE     G+ +VYV +Q TAE +   L+  GH AV+YH G+ +  R   QA F   + R++VAT+AFG+G+D  +IR VVHFD+PKSIENY Q
Sbjct:  220 EKLSTLNKILGETQ---GASIVYVTQQKTAEEIAQALQASGHSAVAYHAGLNSDVRSAIQADFMASKTRIIVATIAFGMGIDKSDIRLVVHFDLPKSIENYSQ 319          
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: A0A6G0XI93_9STRA (DNA helicase n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI93_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.010e-21
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 DKRENLSRLLGEPPLDTGSVVVYVWRQATAEALGALLRGEGH-DAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
            D+   L +LL  PPL  GSV+VYV  Q  A  +  LL  +G   A +YH G++A  ++K Q  F  G+ RVVVAT+AFG+G+D   +RGVVH+ MP S+E+YVQ
Sbjct:  578 DRYMALRKLLSTPPLSKGSVIVYVHTQYAASQVAGLLASDGAIKASAYHAGLDADIKEKVQKGFASGKIRVVVATIAFGMGIDKANVRGVVHYHMPSSMEHYVQ 681          
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: A0A7S2PT99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PT99_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.720e-21
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   43 LDTGSVVVYVWRQATAEALGALLRGEGHDA--VSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
            L TGS+++YVWR+  AEAL   + G G +   V YHGGM+AG R  AQ  F RG+AR+ VATVAFGLG+D  ++  VVH  +P+S E+Y+Q
Sbjct:   88 LQTGSIIIYVWRKRDAEALAEQISGAGVEGGVVFYHGGMDAGQRAVAQGKFMRGKARICVATVAFGLGIDKPDVYAVVHMCIPQSPEHYLQ 178          
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: A0A8J1ZBZ7_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1ZBZ7_9DINO)

HSP 1 Score: 96.7 bits (239), Expect = 4.180e-21
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 1
Query:   52 GSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
            G ++VYVWR+AT  AL  LL G G + V YH  + A  R + Q  FT+ R RV+V T+AFG+G+D  +I+GV+H+DMPKS+EN+VQ
Sbjct: 1015 GPILVYVWRRATVTALARLLSGRGVNCVGYHSSLAAEDRDRFQKEFTQNRIRVLVTTIAFGMGIDKPDIQGVIHYDMPKSLENFVQ 1100          
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: A0A8J1YWN9_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1YWN9_9DINO)

HSP 1 Score: 96.7 bits (239), Expect = 4.210e-21
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1
Query:   52 GSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
            GSV+VYVWR+ T  AL  LL G G  AV YH  + A  R + Q  FT  R RV+V T+AFG+G+D  +I+GV+H+DMPKS+EN+VQ
Sbjct: 1367 GSVLVYVWRRKTVTALAKLLGGRGVQAVGYHSALSAEDRDRFQKEFTVNRIRVMVTTIAFGMGIDKPDIQGVIHYDMPKSLENFVQ 1452          
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Match: UPI00190543CC (RecQ family ATP-dependent DNA helicase n=1 Tax=Roseibacillus ishigakijimensis TaxID=454146 RepID=UPI00190543CC)

HSP 1 Score: 95.9 bits (237), Expect = 7.400e-21
Identity = 45/86 (52.33%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   52 GSVVVYVWRQATAEALGALLRGEGHDAVSYHGGMEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIENYVQ 309
            G+++VYV  Q TAE +  LL+  GH A +YH GM A AR++ Q+ F     R+VVAT+AFG+G+D   IRGVVH+++PK++ENYVQ
Sbjct:  240 GALIVYVTLQQTAETVAGLLQRAGHSARAYHAGMRAEAREEVQSGFMNDEVRIVVATIAFGMGIDKGNIRGVVHYNLPKTLENYVQ 325          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75534.15239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8A0_ECTSI1.840e-4683.50DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JFV2_9PHAE2.520e-4683.50DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835Z8Q0_9STRA2.860e-2855.88DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
W7TAC7_9STRA2.560e-2251.38DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A7Y7AW24_9GAMM1.460e-2147.57RecQ family ATP-dependent DNA helicase (Fragment) ... [more]
A0A6G0XI93_9STRA3.010e-2148.08DNA helicase n=2 Tax=Aphanomyces euteiches TaxID=1... [more]
A0A7S2PT99_9STRA3.720e-2152.75Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A8J1ZBZ7_9DINO4.180e-2152.33Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A8J1YWN9_9DINO4.210e-2154.65Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
UPI00190543CC7.400e-2152.33RecQ family ATP-dependent DNA helicase n=1 Tax=Ros... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75534contigH-elongata_contig75534:1913..2230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue8.6e-40
Seed eggNOG ortholog2880.D7G8A0
KEGG koko:K10730,ko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.989582-CDS-H-elongata_contig75534:1912..22301622931160.989582-CDS-H-elongata_contig75534:1912..2230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75534 1913..2230 +
1691679723.3361325-CDS-H-elongata_contig75534:1912..22301691679723.3361325-CDS-H-elongata_contig75534:1912..2230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75534 1913..2230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75534.15239.1prot_H-elongata_contig75534.15239.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75534 1913..2230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75534.15239.1

>prot_H-elongata_contig75534.15239.1 ID=prot_H-elongata_contig75534.15239.1|Name=mRNA_H-elongata_contig75534.15239.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
DKRENLSRLLGEPPLDTGSVVVYVWRQATAEALGALLRGEGHDAVSYHGG
MEAGARQKAQAAFTRGRARVVVATVAFGLGVDMREIRGVVHFDMPKSIEN
YVQVM*
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mRNA from alignment at H-elongata_contig75534:1913..2230+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75534.15239.1 ID=mRNA_H-elongata_contig75534.15239.1|Name=mRNA_H-elongata_contig75534.15239.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig75534:1913..2230+ (Himanthalia elongata Himel1 dioecious)
GACAAGAGGGAAAACCTCTCGAGGCTTCTGGGAGAGCCGCCGCTGGACAC CGGGTCGGTGGTGGTGTACGTCTGGAGGCAGGCCACCGCGGAAGCCCTGG GAGCCCTCCTAAGGGGAGAGGGGCACGACGCCGTGTCCTACCACGGCGGC ATGGAGGCCGGCGCCCGGCAGAAGGCGCAGGCGGCGTTCACGAGGGGTCG GGCGAGGGTGGTGGTGGCCACGGTGGCGTTCGGACTGGGGGTGGACATGA GGGAGATCCGTGGGGTAGTGCACTTCGACATGCCCAAGAGCATCGAGAAC TACGTGCAGGTAATGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig75534:1913..2230+

>mRNA_H-elongata_contig75534.15239.1 ID=mRNA_H-elongata_contig75534.15239.1|Name=mRNA_H-elongata_contig75534.15239.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig75534:1913..2230+ (Himanthalia elongata Himel1 dioecious)
GACAAGAGGGAAAACCTCTCGAGGCTTCTGGGAGAGCCGCCGCTGGACAC
CGGGTCGGTGGTGGTGTACGTCTGGAGGCAGGCCACCGCGGAAGCCCTGG
GAGCCCTCCTAAGGGGAGAGGGGCACGACGCCGTGTCCTACCACGGCGGC
ATGGAGGCCGGCGCCCGGCAGAAGGCGCAGGCGGCGTTCACGAGGGGTCG
GGCGAGGGTGGTGGTGGCCACGGTGGCGTTCGGACTGGGGGTGGACATGA
GGGAGATCCGTGGGGTAGTGCACTTCGACATGCCCAAGAGCATCGAGAAC
TACGTGCAGGTAATGTAGGACAAGAGGGAAAACCTCTCGAGGCTTCTGGG
AGAGCCGCCGCTGGACACCGGGTCGGTGGTGGTGTACGTCTGGAGGCAGG
CCACCGCGGAAGCCCTGGGAGCCCTCCTAAGGGGAGAGGGGCACGACGCC
GTGTCCTACCACGGCGGCATGGAGGCCGGCGCCCGGCAGAAGGCGCAGGC
GGCGTTCACGAGGGGTCGGGCGAGGGTGGTGGTGGCCACGGTGGCGTTCG
GACTGGGGGTGGACATGAGGGAGATCCGTGGGGTAGTGCACTTCGACATG
CCCAAGAGCATCGAGAACTACGTGCAGGTAATGTAG
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