mRNA_H-elongata_contig75528.15237.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75528.15237.1
Unique NamemRNA_H-elongata_contig75528.15237.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75528.15237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75528contigH-elongata_contig75528:1598..2611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size614
Cds size333
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75528.15237.1prot_H-elongata_contig75528.15237.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75528 1598..2332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.8353183-CDS-H-elongata_contig75528:1597..18451622931160.8353183-CDS-H-elongata_contig75528:1597..1845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75528 1598..1845 +
1691679723.2880845-CDS-H-elongata_contig75528:1597..18451691679723.2880845-CDS-H-elongata_contig75528:1597..1845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75528 1598..1845 +
1622931160.8556588-CDS-H-elongata_contig75528:2247..23321622931160.8556588-CDS-H-elongata_contig75528:2247..2332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75528 2248..2332 +
1691679723.2966037-CDS-H-elongata_contig75528:2247..23321691679723.2966037-CDS-H-elongata_contig75528:2247..2332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75528 2248..2332 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.8694246-UTR-H-elongata_contig75528:2332..26111622931160.8694246-UTR-H-elongata_contig75528:2332..2611Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75528 2333..2611 +
1691679723.3056693-UTR-H-elongata_contig75528:2332..26111691679723.3056693-UTR-H-elongata_contig75528:2332..2611Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75528 2333..2611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75528.15237.1

>prot_H-elongata_contig75528.15237.1 ID=prot_H-elongata_contig75528.15237.1|Name=mRNA_H-elongata_contig75528.15237.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
PPAPSRDARDGDGRRAGRKPVPAGAGVPISVSNVWVSRMPRGRVKERRVS
STGEGRSSPSRDGLGLEGSALSAGSTRSNMGARYERLQAMYRRVNRREAV
GPPRRRAGVG*
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mRNA from alignment at H-elongata_contig75528:1598..2611+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75528.15237.1 ID=mRNA_H-elongata_contig75528.15237.1|Name=mRNA_H-elongata_contig75528.15237.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1014bp|location=Sequence derived from alignment at H-elongata_contig75528:1598..2611+ (Himanthalia elongata Himel1 dioecious)
CCGCCAGCACCATCCAGAGATGCCAGAGATGGAGATGGTCGACGCGCGGG
TCGTAAACCCGTGCCGGCGGGGGCTGGCGTTCCAATCAGCGTTTCAAATG
TTTGGGTTTCGAGAATGCCGCGGGGCAGGGTCAAGGAGCGGCGAGTGTCC
TCGACGGGAGAAGGGCGATCCTCACCTTCGCGAGATGGTCTCGGTTTGGA
GGGTAGCGCGCTGTCGGCTGGCAGCACTCGCAGTAACATGGGAGCAAGGT
AATACGAACGCCGCTGTGCTTCTGTAATCCTAGAGAGCATTATAGTAGCT
ACTGTGTGTGTGCTGACTGTGGATCATGTTTTTTACCACAGTTGCGAGAC
AACATATGATTATCAAGATACTATAACTACTGCAGTACAGTATCGCAAAT
GCAAGATAACATTATCAAGTGGATTGAATCGCGCTCAAGCCTGCCTTCTC
TATATCAGATATTGATGACTTTTTGATCAAAGTAATCAAAGTCATCGCAC
GCATTCAATCAAGGCAAAATCGAATCCCACCATTATAAGGAACAAATTCC
TCCCGCTTGAATGTCTAATTATGTCTAACTAAGTATCGCCTCCTCCGTCG
TGACCTTGACTCCGTCCACGTGTTCCATAACATGCCGCGCCATGCCGCAG
ATACGAGCGGTTACAAGCCATGTACAGGAGAGTAAACCGCAGAGAGGCTG
TCGGTCCTCCTCGACGGAGGGCGGGCGTAGGCTGATCGTTTTTGTTTTTG
TTTTACTTGTGTATAAAGTATAAAGACATTTTTGCGCCGAGGCGTTTTAT
TTTTAAGCCACCCTCCAGTACCGTGTACACCTACCTGTCTGTGGAACCCG
AAACTACTCGATATAAAGACTGCTACTCGCATTTAACCCCTTGGGGTGGG
ACTCGAGGACTAATAGGGACTAATAACTCGTAAGACAGAGTGGCTCGATT
CATATTCCAGATTGAGAAAGGAGACAGGAGATTGTGGAGTGAGTTGGAGG
GAGTATATTGTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig75528:1598..2611+

>mRNA_H-elongata_contig75528.15237.1 ID=mRNA_H-elongata_contig75528.15237.1|Name=mRNA_H-elongata_contig75528.15237.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig75528:1598..2611+ (Himanthalia elongata Himel1 dioecious)
CCGCCAGCACCATCCAGAGATGCCAGAGATGGAGATGGTCGACGCGCGGG
TCGTAAACCCGTGCCGGCGGGGGCTGGCGTTCCAATCAGCGTTTCAAATG
TTTGGGTTTCGAGAATGCCGCGGGGCAGGGTCAAGGAGCGGCGAGTGTCC
TCGACGGGAGAAGGGCGATCCTCACCTTCGCGAGATGGTCTCGGTTTGGA
GGGTAGCGCGCTGTCGGCTGGCAGCACTCGCAGTAACATGGGAGCAAGCC
GCCAGCACCATCCAGAGATGCCAGAGATGGAGATGGTCGACGCGCGGGTC
GTAAACCCGTGCCGGCGGGGGCTGGCGTTCCAATCAGCGTTTCAAATGTT
TGGGTTTCGAGAATGCCGCGGGGCAGGGTCAAGGAGCGGCGAGTGTCCTC
GACGGGAGAAGGGCGATCCTCACCTTCGCGAGATGGTCTCGGTTTGGAGG
GTAGCGCGCTGTCGGCTGGCAGCACTCGCAGTAACATGGGAGCAAGATAC
GAGCGGTTACAAGCCATGTACAGGAGAGTAAACCGCAGAGAGGCTGTCGG
TCCTCCTCGACGGAGGGCGGGCGTAGGCTGAATACGAGCGGTTACAAGCC
ATGTACAGGAGAGTAAACCGCAGAGAGGCTGTCGGTCCTCCTCGACGGAG
GGCGGGCGTAGGCTGA
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