mRNA_H-elongata_contig75527.15236.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75527.15236.1
Unique NamemRNA_H-elongata_contig75527.15236.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75527.15236.1 vs. uniprot
Match: D8LDK8_ECTSI (Putative lipase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK8_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.980e-23
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = 2 
Query:    2 AGKRAQEHMWDATHYTEAFVAANDDMKAVVFRGTKDIADWFTNLKLLQTKCPVEWNIPDVDGGLHEGFNEAVSTVWEATPSMHETIK 262
            A + A+   +DA   TEAFVAANDDM AVVFRGTK++ DW TNL +    C  +W  PD  G +HEGFNE V +VWE   +M + IK
Sbjct:   55 ADEAAKRSSFDAIQDTEAFVAANDDMVAVVFRGTKELTDWATNLDISPRDCAEQWEAPDAVGAVHEGFNEGVDSVWEVRGNMRKVIK 141
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BLAST of mRNA_H-elongata_contig75527.15236.1 vs. uniprot
Match: A0A6H5JMK4_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMK4_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.400e-21
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 2 
Query:    5 GKRAQEHMWDATHYTEAFVAANDDMKAVVFRGTKDIADWFTNLKLLQTKCPVEWNIPDVDGGLHEGFNEAVSTVWEATPSMHET 256
            G+ A+++ +   H T+AFVAA+DD+ AVVFRGT  IADW+TN K+   KCP EW +P   G +H GF++AV TVW +TPS   T
Sbjct:  148 GEEARKNPFGNLHDTDAFVAASDDIIAVVFRGTMGIADWYTNAKVQPKKCPQEWRVPPPGGTVHTGFDDAVGTVWLSTPSGQPT 231
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BLAST of mRNA_H-elongata_contig75527.15236.1 vs. uniprot
Match: A0A6H5KWV7_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWV7_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.860e-14
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 2 
Query:   26 MWDATHYTEAFVAANDDMKAVVFRGTKDIADWFTNLKLLQTKCPVEWNIPDVDGGLHEGFNEAVSTVWE---ATPSMHETIKK 265
            +WD    TEAFVAANDD+  VVFRG+ ++ DW TN  L++   P +W +  +   +H+GF++AV TVW    A PS    I K
Sbjct:  119 IWDRIQDTEAFVAANDDVILVVFRGSSELTDWTTNFNLVRRLVPSDWLLDGLGCDVHQGFDDAVETVWNPGSAHPSGMRNIIK 201
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BLAST of mRNA_H-elongata_contig75527.15236.1 vs. uniprot
Match: A0A1V4AQB0_9BACT (Lipase_3 domain-containing protein n=1 Tax=Candidatus Brocadia caroliniensis TaxID=1004156 RepID=A0A1V4AQB0_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 3.040e-6
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 2 
Query:   47 TEAFVAANDDMKAVVFRGTKDIADWFTNLKLLQTKCPVEWNIPDVDGGLHEGFNEAVSTVW 229
            T+AF+A N +M  + FRGT  + DW T++ +     P        DG +HEGF+ A+S+VW
Sbjct:   57 TQAFIAGNQEMLMLAFRGTASLKDWMTDINIDLINGP--------DGKVHEGFSMAISSVW 109
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BLAST of mRNA_H-elongata_contig75527.15236.1 vs. uniprot
Match: A0A2E0ATF5_9BACT (Lipase_3 domain-containing protein n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0ATF5_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 4.690e-6
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 2 
Query:   47 TEAFVAANDDMKAVVFRGTKD--IADWFTNLKLLQTKCPVEWNIPDVDGGLHEGFNEAVSTVW 229
            T+AFVAANDD+  V FRGT+   +ADW T+L L   + P+        G +H GF +++S +W
Sbjct:   55 TQAFVAANDDLVVVAFRGTEPTTLADWITDLSLDLMRGPL-------GGEVHSGFYDSLSNIW 110
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BLAST of mRNA_H-elongata_contig75527.15236.1 vs. uniprot
Match: A0A355CND3_9CYAN (Lipase_3 domain-containing protein n=3 Tax=unclassified Microcoleaceae TaxID=2053578 RepID=A0A355CND3_9CYAN)

HSP 1 Score: 50.8 bits (120), Expect = 2.480e-5
Identity = 23/61 (37.70%), Postives = 38/61 (62.30%), Query Frame = 2 
Query:   47 TEAFVAANDDMKAVVFRGTKDIADWFTNLKLLQTKCPVEWNIPDVDGGLHEGFNEAVSTVW 229
            TE  +  +D+   + FRGT+++ DW TNLKLL+T     W +    G +HEGF +++ ++W
Sbjct:  253 TEGLMVGDDEKIIIAFRGTENLTDWQTNLKLLKTS----WKV----GMVHEGFYKSLDSLW 305
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BLAST of mRNA_H-elongata_contig75527.15236.1 vs. uniprot
Match: UPI0016886C83 (Lipase family protein n=2 Tax=Leptolyngbya sp. FACHB-261 TaxID=2692806 RepID=UPI0016886C83)

HSP 1 Score: 49.3 bits (116), Expect = 8.240e-5
Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 2 
Query:   47 TEAFVAANDDMKAVVFRGTKDIADWFTNLKLL---QTKCPVEWNIPDVDGGLHEGFNEAVSTVW 229
            T+AFVAAND +  + FRGT D  DW TN+ +    +TK           G +HEGF EA+  VW
Sbjct:   97 TQAFVAANDQIVVLSFRGTTDRNDWATNIGVAFKEETKI----------GKVHEGFLEALDCVW 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75527.15236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LDK8_ECTSI3.980e-2352.87Putative lipase n=2 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JMK4_9PHAE1.400e-2152.38Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KWV7_9PHAE1.860e-1444.58Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A1V4AQB0_9BACT3.040e-639.34Lipase_3 domain-containing protein n=1 Tax=Candida... [more]
A0A2E0ATF5_9BACT4.690e-642.86Lipase_3 domain-containing protein n=2 Tax=Plancto... [more]
A0A355CND3_9CYAN2.480e-537.70Lipase_3 domain-containing protein n=3 Tax=unclass... [more]
UPI0016886C838.240e-543.75Lipase family protein n=2 Tax=Leptolyngbya sp. FAC... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75527contigH-elongata_contig75527:1716..2092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue3.1e-18
Seed eggNOG ortholog2880.D8LDK8
GOsGO:0005575,GO:0005576,GO:0005615,GO:0044421
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75527.15236.1prot_H-elongata_contig75527.15236.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75527 1716..2067 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.75621-CDS-H-elongata_contig75527:1715..17811622931160.75621-CDS-H-elongata_contig75527:1715..1781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75527 1716..1781 -
1691679723.2541032-CDS-H-elongata_contig75527:1715..17811691679723.2541032-CDS-H-elongata_contig75527:1715..1781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75527 1716..1781 -
1622931160.768596-CDS-H-elongata_contig75527:1893..20671622931160.768596-CDS-H-elongata_contig75527:1893..2067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75527 1894..2067 -
1691679723.2719839-CDS-H-elongata_contig75527:1893..20671691679723.2719839-CDS-H-elongata_contig75527:1893..2067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75527 1894..2067 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.7840354-UTR-H-elongata_contig75527:2067..20921622931160.7840354-UTR-H-elongata_contig75527:2067..2092Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75527 2068..2092 -
1691679723.2800622-UTR-H-elongata_contig75527:2067..20921691679723.2800622-UTR-H-elongata_contig75527:2067..2092Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75527 2068..2092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75527.15236.1

>prot_H-elongata_contig75527.15236.1 ID=prot_H-elongata_contig75527.15236.1|Name=mRNA_H-elongata_contig75527.15236.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MWDATHYTEAFVAANDDMKAVVFRGTKDIADWFTNLKLLQTKCPVEWNIP
DVDGGLHEGFNEAVSTVWEATPSMHETIKK
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mRNA from alignment at H-elongata_contig75527:1716..2092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75527.15236.1 ID=mRNA_H-elongata_contig75527.15236.1|Name=mRNA_H-elongata_contig75527.15236.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=377bp|location=Sequence derived from alignment at H-elongata_contig75527:1716..2092- (Himanthalia elongata Himel1 dioecious)
GGCAGGAAAGAGGGCTCAGGAGCACATGTGGGATGCCACCCATTACACGG
AGGCGTTCGTCGCAGCGAACGACGACATGAAAGCTGTCGTTTTCCGCGGC
ACCAAAGATATAGCCGACTGGTTCACCAACCTCAAACTACTACAAACGAA
GTGCCCAGTCGAGTGGAATATCCCCGACGTCGACGGGGGCCTACATGAGG
TAAGAGCAGACGGCGTGCTTTCGTGAAAATCTTCCTATCTCGGACCATTC
TCGCCCACAGTAGCGTTAATTACAGCTGACTAGTCAAACAAATTCGGTCA
AACCAATCCAGGGCTTCAATGAAGCCGTCAGCACCGTGTGGGAGGCCACA
CCAAGCATGCACGAGACGATCAAGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig75527:1716..2092-

>mRNA_H-elongata_contig75527.15236.1 ID=mRNA_H-elongata_contig75527.15236.1|Name=mRNA_H-elongata_contig75527.15236.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig75527:1716..2092- (Himanthalia elongata Himel1 dioecious)
ATGTGGGATGCCACCCATTACACGGAGGCGTTCGTCGCAGCGAACGACGA
CATGAAAGCTGTCGTTTTCCGCGGCACCAAAGATATAGCCGACTGGTTCA
CCAACCTCAAACTACTACAAACGAAGTGCCCAGTCGAGTGGAATATCCCC
GACGTCGACGGGGGCCTACATGAGATGTGGGATGCCACCCATTACACGGA
GGCGTTCGTCGCAGCGAACGACGACATGAAAGCTGTCGTTTTCCGCGGCA
CCAAAGATATAGCCGACTGGTTCACCAACCTCAAACTACTACAAACGAAG
TGCCCAGTCGAGTGGAATATCCCCGACGTCGACGGGGGCCTACATGAGGG
CTTCAATGAAGCCGTCAGCACCGTGTGGGAGGCCACACCAAGCATGCACG
AGACGATCAAGAAGGGCTTCAATGAAGCCGTCAGCACCGTGTGGGAGGCC
ACACCAAGCATGCACGAGACGATCAAGAAG
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