mRNA_H-elongata_contig75402.15225.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75402.15225.1
Unique NamemRNA_H-elongata_contig75402.15225.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75402.15225.1 vs. uniprot
Match: A0A6H5KHT0_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHT0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.130e-15
Identity = 49/74 (66.22%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    1 MDLTMRSRLVLVGRNGSGKSTLLRLIAAAAGVEGVGATAAGEGGDKAAGLVPSKGSIVRNYNARVGLTTPIDFE 222
            MD T RSR+VLVGRNGSGKSTLLRLIAAA    G GA  A  GGD    L P++GSIVRN+NARVGL T    E
Sbjct:  549 MDFTRRSRVVLVGRNGSGKSTLLRLIAAAT-EAGSGALGAATGGDD--NLAPTRGSIVRNFNARVGLFTQHHAE 619
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BLAST of mRNA_H-elongata_contig75402.15225.1 vs. uniprot
Match: D7FMB9_ECTSI (ABC transporter related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMB9_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.050e-7
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 3 
Query:  171 RKELQRTSRSHHADRLRMSESALQHMLRVFQGMEGINQAELRRQLGEL 314
            R + QR  R HH + L MS+S LQ M R+F  +EGIN+AELRRQLGEL
Sbjct:   55 RPKFQRARRQHHVETLLMSDSPLQQMRRIFGNVEGINEAELRRQLGEL 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75402.15225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHT0_9PHAE6.130e-1566.22ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D7FMB9_ECTSI1.050e-760.42ABC transporter related n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75402contigH-elongata_contig75402:316..961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2880.D7G0X5
KEGG koko:K06158
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0488@1,KOG0062@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionABC transporter-like
Ec32 orthologEc-17_003550.1
Exons2
Model size314
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75402.15225.1prot_H-elongata_contig75402.15225.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75402 378..961 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.783728-UTR-H-elongata_contig75402:315..3771622931159.783728-UTR-H-elongata_contig75402:315..377Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75402 316..377 -
1691679722.8193629-UTR-H-elongata_contig75402:315..3771691679722.8193629-UTR-H-elongata_contig75402:315..377Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75402 316..377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.8073905-CDS-H-elongata_contig75402:377..4291622931159.8073905-CDS-H-elongata_contig75402:377..429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75402 378..429 -
1691679722.82886-CDS-H-elongata_contig75402:377..4291691679722.82886-CDS-H-elongata_contig75402:377..429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75402 378..429 -
1622931159.8236814-CDS-H-elongata_contig75402:761..9611622931159.8236814-CDS-H-elongata_contig75402:761..961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75402 762..961 -
1691679722.8365874-CDS-H-elongata_contig75402:761..9611691679722.8365874-CDS-H-elongata_contig75402:761..961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75402 762..961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75402.15225.1

>prot_H-elongata_contig75402.15225.1 ID=prot_H-elongata_contig75402.15225.1|Name=mRNA_H-elongata_contig75402.15225.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MDLTMRSRLVLVGRNGSGKSTLLRLIAAAAGVEGVGATAAGEGGDKAAGL
VPSKGSIVRNYNARVGLTTPIDFECPRARCSTC*
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mRNA from alignment at H-elongata_contig75402:316..961-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75402.15225.1 ID=mRNA_H-elongata_contig75402.15225.1|Name=mRNA_H-elongata_contig75402.15225.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=646bp|location=Sequence derived from alignment at H-elongata_contig75402:316..961- (Himanthalia elongata Himel1 dioecious)
ATGGACCTGACGATGAGGAGCCGCCTGGTCCTGGTTGGCCGAAACGGCTC
TGGGAAAAGCACTCTCCTGCGGTTGATCGCTGCAGCCGCGGGGGTTGAGG
GGGTTGGAGCTACGGCAGCCGGTGAGGGGGGCGACAAGGCTGCGGGGCTC
GTGCCGTCAAAGGGAAGCATCGTAAGGAACTACAACGCACGAGTCGGTCT
GTTCACGCAGGTGAGGCTAGGCCACACACGGCGTTATCGTTACCGTTACC
GTTACCGTTACCGGCGTGGTAGCCTTCATTGTGTTGCTAGCGAGGGTTAA
CATGCTTTTTTTTTTAAGTGCTCGGAACTGGGGGTGGATTCTATTTGGAA
GATAATGTAGTAGCTGTTAGACCAGTCGAAAGATAATTCGTCATTCGATA
CGCTGAGGTCGATCACAGGATGCCAGGCGTAAAATAGCGCACCAACTAAC
ACTAATGTGGATTTCCCGATTTGTTTTCGGTTGTTCGCTCTTTCCGCCTT
ACTAATTTGGCTGCACTGAATGGGACACCCAGCACCACGCCGATAGACTT
CGAATGTCCGAGAGCGCGCTGCAGCACATGCTAAGGGTGTTCCAAGGCAT
GGAAGGCATCAATCAAGCAGAGCTCCGTCGTCAGCTGGGTGAGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig75402:316..961-

>mRNA_H-elongata_contig75402.15225.1 ID=mRNA_H-elongata_contig75402.15225.1|Name=mRNA_H-elongata_contig75402.15225.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig75402:316..961- (Himanthalia elongata Himel1 dioecious)
ATGGACCTGACGATGAGGAGCCGCCTGGTCCTGGTTGGCCGAAACGGCTC
TGGGAAAAGCACTCTCCTGCGGTTGATCGCTGCAGCCGCGGGGGTTGAGG
GGGTTGGAGCTACGGCAGCCGGTGAGGGGGGCGACAAGGCTGCGGGGCTC
GTGCCGTCAAAGGGAAGCATCGTAAGGAACTACAACGCACGAGTCGGTCT
ATGGACCTGACGATGAGGAGCCGCCTGGTCCTGGTTGGCCGAAACGGCTC
TGGGAAAAGCACTCTCCTGCGGTTGATCGCTGCAGCCGCGGGGGTTGAGG
GGGTTGGAGCTACGGCAGCCGGTGAGGGGGGCGACAAGGCTGCGGGGCTC
GTGCCGTCAAAGGGAAGCATCGTAAGGAACTACAACGCACGAGTCGGTCT
CACCACGCCGATAGACTTCGAATGTCCGAGAGCGCGCTGCAGCACATGCT
AACACCACGCCGATAGACTTCGAATGTCCGAGAGCGCGCTGCAGCACATG
CTAA
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