prot_H-elongata_contig75402.15225.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig75402.15225.1
Unique Nameprot_H-elongata_contig75402.15225.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length84
Homology
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BLAST of mRNA_H-elongata_contig75402.15225.1 vs. uniprot
Match: A0A6H5KHT0_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHT0_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.850e-15
Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 0 
Query:    1 MDLTMRSRLVLVGRNGSGKSTLLRLIAAAAGVEGVGATAAGEGGDKAAGLVPSKGSIVRNYNARVGLTT 69
            MD T RSR+VLVGRNGSGKSTLLRLIAAA    G GA  A  GGD    L P++GSIVRN+NARVGL T
Sbjct:  549 MDFTRRSRVVLVGRNGSGKSTLLRLIAAAT-EAGSGALGAATGGDD--NLAPTRGSIVRNFNARVGLFT 614
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75402.15225.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHT0_9PHAE3.850e-1569.57ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003959ATPase, AAA-type, corePFAMPF13304AAA_21coord: 10..63
e-value: 7.2E-7
score: 29.3
NoneNo IPR availableGENE3D3.40.50.300coord: 1..77
e-value: 1.7E-7
score: 33.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75402contigH-elongata_contig75402:378..961 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75402.15225.1mRNA_H-elongata_contig75402.15225.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig75402 316..961 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig75402.15225.1 ID=prot_H-elongata_contig75402.15225.1|Name=mRNA_H-elongata_contig75402.15225.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MDLTMRSRLVLVGRNGSGKSTLLRLIAAAAGVEGVGATAAGEGGDKAAGL
VPSKGSIVRNYNARVGLTTPIDFECPRARCSTC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003959ATPase_AAA_core
IPR027417P-loop_NTPase