mRNA_H-elongata_contig119746.1522.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119746.1522.1
Unique NamemRNA_H-elongata_contig119746.1522.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig119746.1522.1 vs. uniprot
Match: A0A6H5KRV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV2_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 5.650e-17
Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 3 
Query:  183 WLDNMEKQLGQTEGLYFLDKMTVADIAVANRVRTLKCGVYDGIPQSIIGAYPKLVALTESILAEPKIAEFMAK 401
            WL NMEKQL  T+G +F DKMTVADI +A R+  ++ GV DGIP +I  +YP L A+ +++++EPK+A F+AK
Sbjct:  130 WLSNMEKQLSSTDGTFFFDKMTVADIMIACRLHPMRNGVLDGIPTTIADSYPSLCAMCDAVVSEPKVAAFLAK 202
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BLAST of mRNA_H-elongata_contig119746.1522.1 vs. uniprot
Match: B1N8E8_9PHAE (Glutathione S-transferase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E8_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.370e-15
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 3 
Query:  183 WLDNMEKQLGQTEGLYFLDKMTVADIAVANRVRTLKCGVYDGIPQSII-GAYPKLVALTESILAEPKIAEFMAK 401
            WL N+EKQL  TEG+YF +KM+VADI +  R++TL+ G Y+G+P +I   +YP L AL +SI+ EPKIA F+AK
Sbjct:  130 WLANVEKQLAATEGIYFAEKMSVADIMITTRLKTLRDGNYNGVPTTIFDSSYPNLNALYDSIVGEPKIAAFIAK 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119746.1522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRV2_9PHAE5.650e-1753.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B1N8E8_9PHAE1.370e-1555.41Glutathione S-transferase 3 n=1 Tax=Laminaria digi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119746contigH-elongata_contig119746:2..1939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1202
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119746.1522.1prot_H-elongata_contig119746.1522.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119746 106..1156 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929701.255245-UTR-H-elongata_contig119746:1..1051622929701.255245-UTR-H-elongata_contig119746:1..105Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119746 2..105 +
1691679124.3885257-UTR-H-elongata_contig119746:1..1051691679124.3885257-UTR-H-elongata_contig119746:1..105Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119746 2..105 +
1622929701.3213375-UTR-H-elongata_contig119746:1156..19391622929701.3213375-UTR-H-elongata_contig119746:1156..1939Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119746 1157..1939 +
1691679124.4205718-UTR-H-elongata_contig119746:1156..19391691679124.4205718-UTR-H-elongata_contig119746:1156..1939Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119746 1157..1939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929701.2870922-CDS-H-elongata_contig119746:105..2431622929701.2870922-CDS-H-elongata_contig119746:105..243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119746 106..243 +
1691679124.3966856-CDS-H-elongata_contig119746:105..2431691679124.3966856-CDS-H-elongata_contig119746:105..243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119746 106..243 +
1622929701.3045325-CDS-H-elongata_contig119746:979..11561622929701.3045325-CDS-H-elongata_contig119746:979..1156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119746 980..1156 +
1691679124.4113803-CDS-H-elongata_contig119746:979..11561691679124.4113803-CDS-H-elongata_contig119746:979..1156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119746 980..1156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119746.1522.1

>prot_H-elongata_contig119746.1522.1 ID=prot_H-elongata_contig119746.1522.1|Name=mRNA_H-elongata_contig119746.1522.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MRYSNSFDAHVFSSFLTYRCRSMGYSWLDNMEKQLGQTEGLYFLDKMTVA
DIAVANRVRTLKCGVYDGIPQSIIGAYPKLVALTESILAEPKIAEFMAKA
GTSK*
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mRNA from alignment at H-elongata_contig119746:2..1939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119746.1522.1 ID=mRNA_H-elongata_contig119746.1522.1|Name=mRNA_H-elongata_contig119746.1522.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1938bp|location=Sequence derived from alignment at H-elongata_contig119746:2..1939+ (Himanthalia elongata Himel1 dioecious)
TCGTTGTTCTCAGTGGATATTGGGATAGATAGCCACAGGAAGCTGTGTGA
TGTAAAACGTGGTGCTTCCTATGCTGCATCCGTTGGCGCCATTTGCTGCA
GATTATGCGCTATTCAAATTCGTTTGATGCTCACGTGTTTTCCTCTTTCC
TGACCTATCGCTGCCGATCCATGGGCTACAGTTGGCTTGATAACATGGAA
AAGCAGCTGGGGCAGACAGAGGGTCTTTACTTTCTCGATAAGGTGGGATA
ACGTATATTAGAACAATGAATTGTATATACTGTATATAAGTATGAAGAGG
GCACTTGCAACAAAGTAAGGAGAACAAGACAATGGAGAGTAGAGTTCTAT
TGAAGATCTCGAGGGTTTATTTGGGCATTGAACATGAATTCAGGGTGTTG
AGCATGAGTTAGCCGAGACGTATCATCCTTATTCATTACGCAATATCCAA
ATACACTGCCAACATATATAAGATACGTTATGATAATTTCATCTACCGGT
AATCAACAGGTCCGCATATTATGTCTCTCTGAGTTTACCGGTAATCAACA
GGTTTACCGGCTAACGTTGAACCTATTAATATCACTAGATTGCTATTGTA
GTTTTAACATGAATTTATTGACCATTGTATGAGATCTTCGATCTTCCAAT
AGCGCATAAACGGGCGTGATTGTTTGTAGGTATTATTTATAACGTGCAAG
ACTATCACCTATAATAGTTGGAAGAGAAGCCACTTAATCATGATGGTGTT
TCAATGGATTACAACAAACATCGGTCTCGTTTCGTCTTTTGACAAGGAGT
TGAATCATATAATTATTTGCGTCGGTGGCCACATGACTCAATTGCGTACT
GTACCTCGAAGTAAAAAAACACTCCACTGCCGTCACAAAATGATTGCTAT
TTTTGTCGGGTAAATCTTACCTTCTTCCCCTGCATATCGGCGTGATGCCT
TCTCATTTCGTTTCCGTCTTATCGGAAGATGACCGTGGCTGACATTGCGG
TCGCGAACCGCGTGAGGACGCTCAAGTGCGGTGTCTATGATGGTATTCCC
CAAAGCATCATCGGCGCATACCCGAAGTTGGTGGCCCTTACTGAATCCAT
ATTGGCCGAGCCTAAGATCGCAGAGTTCATGGCCAAGGCCGGAACCTCGA
AGTGATTTGAAATCTCGTTACCGATTGACGCTTTGTTGCGCACGAGTAAA
GGCTGTGGCTTTTGTGCGAAATGTTTATGTATACCCGAACGTGCAGCGAT
GGTGTGGATGAGGTGTCTGACATATGGTTTTCTCATAATTTCAGCTTTTA
TGTTTTTGCAGTGTGGGCGGGGGTGGACTTGACCGACGGTCACAGTTAGT
AGGGACATGTGTGCATCCGGCGCGAGCTTTCTGGCTCATTTCGTTTGCTT
TGACCACTTCTATATTCATCCAGAGTTCATGTGTTTATTCTTAGAAAAAT
GTATGAATGTTCGGAGGAGTTGATTGAATTCGTATGTTTTTTAGAAAAAT
AAGCTCGTGGTTCATGAAAAGTAACTAGAAATGTCTAGGACATTTTGTAC
TCTTCCATATAGCGTAGTTGAGCGTGTCAATTAGCGGTTAGTACAAATCT
TACTTCGGAGATCGGTTGCTGTAGCCACGAGGTCGATATTTGTTACCTTG
GCACCTGAGGCCATGGACCCATGCCGTCTTCGGTGTTTCTAGAACGGTAG
GGCAACCGCACTACACCCGTTAGGCAAAGGTTAAGATTTCCCATTGCCTC
TCCCTTTCCCTGTTTCGAACTGTGTGGGGCCTCAGATGGCCAACTCCCCC
AAAGATCTCAGAAGCAGGAGGGACACCGCATTATCCACCTCCGGGACCAT
GTTACCAATCGTTACATGAAGTTAAAAATACTTGGCCACGGGATTCTCCA
CGAGGAAATCGCAGGCTCAAACGGAACCGATATGGAAT
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Coding sequence (CDS) from alignment at H-elongata_contig119746:2..1939+

>mRNA_H-elongata_contig119746.1522.1 ID=mRNA_H-elongata_contig119746.1522.1|Name=mRNA_H-elongata_contig119746.1522.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig119746:2..1939+ (Himanthalia elongata Himel1 dioecious)
ATGCGCTATTCAAATTCGTTTGATGCTCACGTGTTTTCCTCTTTCCTGAC
CTATCGCTGCCGATCCATGGGCTACAGTTGGCTTGATAACATGGAAAAGC
AGCTGGGGCAGACAGAGGGTCTTTACTTTCTCGATAAGATGCGCTATTCA
AATTCGTTTGATGCTCACGTGTTTTCCTCTTTCCTGACCTATCGCTGCCG
ATCCATGGGCTACAGTTGGCTTGATAACATGGAAAAGCAGCTGGGGCAGA
CAGAGGGTCTTTACTTTCTCGATAAGATGACCGTGGCTGACATTGCGGTC
GCGAACCGCGTGAGGACGCTCAAGTGCGGTGTCTATGATGGTATTCCCCA
AAGCATCATCGGCGCATACCCGAAGTTGGTGGCCCTTACTGAATCCATAT
TGGCCGAGCCTAAGATCGCAGAGTTCATGGCCAAGGCCGGAACCTCGAAG
TGAATGACCGTGGCTGACATTGCGGTCGCGAACCGCGTGAGGACGCTCAA
GTGCGGTGTCTATGATGGTATTCCCCAAAGCATCATCGGCGCATACCCGA
AGTTGGTGGCCCTTACTGAATCCATATTGGCCGAGCCTAAGATCGCAGAG
TTCATGGCCAAGGCCGGAACCTCGAAGTGA
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