mRNA_H-elongata_contig75364.15219.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75364.15219.1
Unique NamemRNA_H-elongata_contig75364.15219.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75364.15219.1 vs. uniprot
Match: D7FLK3_ECTSI (AAA ATPase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK3_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.530e-30
Identity = 79/171 (46.20%), Postives = 98/171 (57.31%), Query Frame = 1 
Query:   13 NVRDPLTEVGVTPTCLRGLKLLSGGWLRLFPA---------SSTTSPAHRGS----LEPHDGEVQANATRGAPVVGLLCRAIAITAASDWCEVNERGESSR--------LSDGEILIPPSVAFNGRLGPFSTHVILRRADAIGVRGSGNMVHHGT-VLHSPPPIACSASVS 459
            ++RDP TEVGVTP CLR L+LLSGGW+R++PA         S+TT PA        L PHD   +    +    +GLLCR +A++  S    V + G+  R        L+D E LIPPSVAFN  LGP+S HVILR A   G         HG  +LHSPP IAC+ASVS
Sbjct:   18 SIRDPFTEVGVTPRCLRRLQLLSGGWVRVYPAATTAATAAASTTTHPAFSSRSPHHLPPHDVSPRPLENQA---IGLLCRVVAVSNGS----VGDSGDDRRGGSGGVRPLADDEALIPPSVAFNAGLGPYSDHVILRWASNSGXXXXXXXXXHGAALLHSPPAIACAASVS 181
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BLAST of mRNA_H-elongata_contig75364.15219.1 vs. uniprot
Match: A0A6H5JDF2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDF2_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.120e-17
Identity = 61/124 (49.19%), Postives = 70/124 (56.45%), Query Frame = 1 
Query:  103 PASSTTSPAHRGSLEPHDGEVQANATRGAPVVGLLCRAIAITAAS-DWCEVNERGESSR---LSDGEILIPPSVAFNGRLGPFSTHVILRRADAIGVRGSGNMVHHGTVL-HSPPPIACSASVS 459
            PA S+ SP HR    PH G       +    +GLLCR +A+   S D    + RG S     L+D E LIPPSVAFN  LGP+S HVILR A   G         HGTVL HSPPPIAC+ASVS
Sbjct:    4 PAFSSRSPHHR---PPHGGSPGPLENQA---IGLLCRVVAVGNGSVDDSGDDRRGGSGSMYALADDEALIPPSVAFNAGLGPYSDHVILRWASNSGGNSGXXNSKHGTVLLHSPPPIACAASVS 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75364.15219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLK3_ECTSI3.530e-3046.20AAA ATPase domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JDF2_9PHAE1.120e-1749.19AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75364contigH-elongata_contig75364:568..1028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog2880.D7FLK3
Preferred namePEX6
KEGG koko:K13339
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
GOsGO:0001302,GO:0001881,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007568,GO:0007569,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016042,GO:0016043,GO:0016054,GO:0016462,GO:0016558,GO:0016562,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017111,GO:0019395,GO:0019752,GO:0023051,GO:0030258,GO:0032502,GO:0032787,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0042579,GO:0042886,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0044743,GO:0045184,GO:0046395,GO:0046907,GO:0046982,GO:0046983,GO:0048869,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055114,GO:0065002,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:1901575
EggNOG free text desc.peroxisome organization
EggNOG OGsCOG0464@1,KOG0736@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.2478807-CDS-H-elongata_contig75364:567..10261622931159.2478807-CDS-H-elongata_contig75364:567..1026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75364 568..1026 +
1691679722.6162724-CDS-H-elongata_contig75364:567..10261691679722.6162724-CDS-H-elongata_contig75364:567..1026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75364 568..1026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75364.15219.1prot_H-elongata_contig75364.15219.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75364 568..1026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75364.15219.1

>prot_H-elongata_contig75364.15219.1 ID=prot_H-elongata_contig75364.15219.1|Name=mRNA_H-elongata_contig75364.15219.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
KDERNVRDPLTEVGVTPTCLRGLKLLSGGWLRLFPASSTTSPAHRGSLEP
HDGEVQANATRGAPVVGLLCRAIAITAASDWCEVNERGESSRLSDGEILI
PPSVAFNGRLGPFSTHVILRRADAIGVRGSGNMVHHGTVLHSPPPIACSA
SVS
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mRNA from alignment at H-elongata_contig75364:568..1028+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75364.15219.1 ID=mRNA_H-elongata_contig75364.15219.1|Name=mRNA_H-elongata_contig75364.15219.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=461bp|location=Sequence derived from alignment at H-elongata_contig75364:568..1028+ (Himanthalia elongata Himel1 dioecious)
AAAGACGAAAGAAACGTCCGCGACCCACTCACGGAGGTGGGCGTTACGCC
AACATGCCTCCGCGGCCTGAAGCTCTTGAGTGGCGGGTGGTTACGACTGT
TCCCTGCCTCCTCCACAACGTCACCCGCGCATCGCGGGTCGCTAGAACCA
CACGACGGCGAAGTCCAAGCCAACGCTACTCGAGGCGCCCCGGTGGTCGG
ACTGCTCTGCCGCGCGATAGCAATCACCGCGGCGAGTGACTGGTGCGAGG
TTAACGAACGGGGTGAGTCTTCACGGCTGAGCGACGGCGAAATCTTAATA
CCTCCGTCAGTCGCGTTCAACGGTCGACTGGGTCCATTTTCTACGCACGT
CATTCTGCGTCGCGCCGATGCAATAGGCGTTCGAGGCAGCGGAAACATGG
TACATCACGGCACGGTGCTCCACAGCCCCCCGCCAATCGCCTGTTCGGCA
TCCGTTTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig75364:568..1028+

>mRNA_H-elongata_contig75364.15219.1 ID=mRNA_H-elongata_contig75364.15219.1|Name=mRNA_H-elongata_contig75364.15219.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig75364:568..1028+ (Himanthalia elongata Himel1 dioecious)
AAAGACGAAAGAAACGTCCGCGACCCACTCACGGAGGTGGGCGTTACGCC
AACATGCCTCCGCGGCCTGAAGCTCTTGAGTGGCGGGTGGTTACGACTGT
TCCCTGCCTCCTCCACAACGTCACCCGCGCATCGCGGGTCGCTAGAACCA
CACGACGGCGAAGTCCAAGCCAACGCTACTCGAGGCGCCCCGGTGGTCGG
ACTGCTCTGCCGCGCGATAGCAATCACCGCGGCGAGTGACTGGTGCGAGG
TTAACGAACGGGGTGAGTCTTCACGGCTGAGCGACGGCGAAATCTTAATA
CCTCCGTCAGTCGCGTTCAACGGTCGACTGGGTCCATTTTCTACGCACGT
CATTCTGCGTCGCGCCGATGCAATAGGCGTTCGAGGCAGCGGAAACATGG
TACATCACGGCACGGTGCTCCACAGCCCCCCGCCAATCGCCTGTTCGGCA
TCCGTTTCGAAAGACGAAAGAAACGTCCGCGACCCACTCACGGAGGTGGG
CGTTACGCCAACATGCCTCCGCGGCCTGAAGCTCTTGAGTGGCGGGTGGT
TACGACTGTTCCCTGCCTCCTCCACAACGTCACCCGCGCATCGCGGGTCG
CTAGAACCACACGACGGCGAAGTCCAAGCCAACGCTACTCGAGGCGCCCC
GGTGGTCGGACTGCTCTGCCGCGCGATAGCAATCACCGCGGCGAGTGACT
GGTGCGAGGTTAACGAACGGGGTGAGTCTTCACGGCTGAGCGACGGCGAA
ATCTTAATACCTCCGTCAGTCGCGTTCAACGGTCGACTGGGTCCATTTTC
TACGCACGTCATTCTGCGTCGCGCCGATGCAATAGGCGTTCGAGGCAGCG
GAAACATGGTACATCACGGCACGGTGCTCCACAGCCCCCCGCCAATCGCC
TGTTCGGCATCCGTTTCG
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