mRNA_H-elongata_contig75317.15214.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75317.15214.1
Unique NamemRNA_H-elongata_contig75317.15214.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 1.080e-36
Identity = 75/102 (73.53%), Postives = 86/102 (84.31%), Query Frame = 1
Query:    1 LGAQMTELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 306
            LG Q+TELKRVRAVAQYM+KELQMVPWT+T N+LK  G+ SS A  LL LSG GDPSG GEGFSFL R AEQAK +++LT+SQKI A+RSVQKVTGT+ DLR
Sbjct: 1009 LGTQLTELKRVRAVAQYMYKELQMVPWTLTINYLKRHGITSSPAASLLMLSGMGDPSGCGEGFSFLPRPAEQAKATASLTTSQKIVAERSVQKVTGTNSDLR 1110          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A6H5JVI6_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI6_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 5.020e-36
Identity = 74/102 (72.55%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 LGAQMTELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 306
            LG Q+ ELKRVRAVAQYM+KELQMVPWT+T N+LK  G+ SS A  LL LSG GDPSG GEGFSFL R AEQAK +++LT+SQKI A+RSVQKVTGT+ DLR
Sbjct:  223 LGTQLAELKRVRAVAQYMYKELQMVPWTLTINYLKRHGITSSPAASLLMLSGMGDPSGCGEGFSFLPRPAEQAKATTSLTTSQKIVAERSVQKVTGTNSDLR 324          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: K0T8U3_THAOC (Bromo domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T8U3_THAOC)

HSP 1 Score: 65.5 bits (158), Expect = 3.160e-10
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 1
Query:    1 LGAQMTELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 306
            L  Q  +LKR +++A+++++ELQ+ PW ++ +F+          T  ++L+G GDPSGRGE +SFL  +  +   SSA       A +  ++K+TGT  DLR
Sbjct:  881 LDGQYHDLKRKQSIAKFIYEELQLSPWNLSGDFIDVHKRAIRNQT--MKLTGIGDPSGRGEAYSFLREEGGRGSKSSAAVDG---ALNAQIKKITGTENDLR 977          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: H3GM70_PHYRM (Bromo domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM70_PHYRM)

HSP 1 Score: 64.7 bits (156), Expect = 5.910e-10
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   19 ELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAK----------TSSALTSSQKIAADRSVQKVTGTSGDLR 306
            +L++   VA+Y++++LQ+ PW +T N+++    G      +L+L G GDP+GRGEGFSF+     +AK          T+ + TS++  A  ++V  VTGT+ DLR
Sbjct:  851 KLEKDIQVARYVNEQLQLTPWNLTNNYVECHLQGKGSG--MLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTAESKTSAETTAMQKAVAAVTGTTADLR 954          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A7S2VAC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAC4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.670e-9
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 1
Query:   40 VAQYMHKELQMVPWTITANFLK-HRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 306
            VAQ++H+EL + PW +T  FL  H+    ++ T +++L+G GDPSG GEGFSFL R+ +   + S        A +  V+K+TGT+ DLR
Sbjct:    4 VAQFIHQELLLAPWHLTGEFLDVHK---KAEGTGMMKLTGLGDPSGTGEGFSFL-REVDSKPSKSV----GNAAINAQVKKITGTNDDLR 85          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A7S3XPI2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPI2_HETAK)

HSP 1 Score: 63.2 bits (152), Expect = 1.810e-9
Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = 1
Query:    1 LGAQMTELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQ--AEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 306
            L AQ+ EL+RV  VA+Y+  EL   PW  T +F++    G       LRL+G GDPSG GEGFSF+  +  A +A+ ++AL   +    D  V++VTGT+ DLR
Sbjct:   16 LQAQVRELQRVIEVARYIRTELLWSPWYQTQSFVQVHLQGKESGK--LRLTGVGDPSGVGEGFSFVREEKVAGKAEKANAL---KLTGTDELVKQVTGTTADLR 114          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: M4BEB5_HYAAE (Bromo domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BEB5_HYAAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.050e-9
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   40 VAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTS-----SALTSSQKIAAD-----RSVQKVTGTSGDLR 306
            VA+Y++++LQ+ PW +T N+++    G      +L+L G GDP+GRGEGFSF+     +AK       SA T+  KI+A+     ++V  VTGT+ DLR
Sbjct:  873 VARYINEQLQLTPWNLTNNYVECHLQGKGSG--MLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDSAPTAESKISAETAAVQKAVAAVTGTTADLR 969          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A067DXS5_CITSI (DUF3591 domain-containing protein (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067DXS5_CITSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.550e-9
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1
Query:   37 AVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 306
            A A ++ +ELQ+ PW +++NF+             L ++G GDPSGRG GFS++ R A +A  SSA+   +K+AA+R    VTGT  DLR
Sbjct:  120 AAASHIERELQITPWNLSSNFVACTNQDRENIE-RLEITGVGDPSGRGLGFSYV-RAAPKASVSSAMVK-KKVAANRGGSNVTGTDADLR 206          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A6G0SI53_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SI53_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.770e-9
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   40 VAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAK----------TSSALTSSQKIAADRSVQKVTGTSGDLR 306
            VA+Y++++LQ+ PW +T N+++    G      +L+L G GDP+GRGEGFSF+     +AK          T+ +  S++  A  ++V  VTGT+ DLR
Sbjct:  869 VARYINEQLQLTPWNLTNNYVECHLQGKGSG--MLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTAESKISAESAAVQKAVAAVTGTTADLR 965          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A1Z5JFQ5_FISSO (Transcription initiation factor TFIID subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFQ5_FISSO)

HSP 1 Score: 62.8 bits (151), Expect = 2.790e-9
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   22 LKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 306
            L++   VAQ++ +ELQ+ PW +T  F+     G  + T +++L+G GDPSG GEGFSFL R+A+   + S        A +  ++K+TGT  DLR
Sbjct:  794 LRQKYEVAQFIFEELQLAPWHLTVEFIDVHKKG--EGTGMMKLTGLGDPSGMGEGFSFL-READSKPSKSV----GNAALNSQIKKITGTENDLR 881          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIW7_ECTSI1.080e-3673.53Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JVI6_9PHAE5.020e-3672.55Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
K0T8U3_THAOC3.160e-1036.27Bromo domain-containing protein (Fragment) n=1 Tax... [more]
H3GM70_PHYRM5.910e-1036.79Bromo domain-containing protein n=1 Tax=Phytophtho... [more]
A0A7S2VAC4_9STRA1.670e-942.22Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S3XPI2_HETAK1.810e-943.27Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
M4BEB5_HYAAE2.050e-940.40Bromo domain-containing protein n=1 Tax=Hyaloperon... [more]
A0A067DXS5_CITSI2.550e-942.22DUF3591 domain-containing protein (Fragment) n=1 T... [more]
A0A6G0SI53_9STRA2.770e-937.37Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A1Z5JFQ5_FISSO2.790e-940.00Transcription initiation factor TFIID subunit 1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75317contigH-elongata_contig75317:396..1297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue5.7e-30
Seed eggNOG ortholog2880.D7FIW7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75317.15214.1prot_H-elongata_contig75317.15214.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75317 396..1285 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.5064602-CDS-H-elongata_contig75317:395..5721622931158.5064602-CDS-H-elongata_contig75317:395..572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75317 396..572 -
1691679722.2476592-CDS-H-elongata_contig75317:395..5721691679722.2476592-CDS-H-elongata_contig75317:395..572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75317 396..572 -
1622931158.5261655-CDS-H-elongata_contig75317:1168..12851622931158.5261655-CDS-H-elongata_contig75317:1168..1285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75317 1169..1285 -
1691679722.267983-CDS-H-elongata_contig75317:1168..12851691679722.267983-CDS-H-elongata_contig75317:1168..1285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75317 1169..1285 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.5379403-UTR-H-elongata_contig75317:1285..12971622931158.5379403-UTR-H-elongata_contig75317:1285..1297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75317 1286..1297 -
1691679722.277348-UTR-H-elongata_contig75317:1285..12971691679722.277348-UTR-H-elongata_contig75317:1285..1297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75317 1286..1297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75317.15214.1

>prot_H-elongata_contig75317.15214.1 ID=prot_H-elongata_contig75317.15214.1|Name=mRNA_H-elongata_contig75317.15214.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MTELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDG
DPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR
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mRNA from alignment at H-elongata_contig75317:396..1297-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75317.15214.1 ID=mRNA_H-elongata_contig75317.15214.1|Name=mRNA_H-elongata_contig75317.15214.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=902bp|location=Sequence derived from alignment at H-elongata_contig75317:396..1297- (Himanthalia elongata Himel1 dioecious)
CTAGGCGCTCAGATGACCGAGCTCAAGCGCGTCCGCGCCGTGGCTCAGTA CATGCACAAGGAGTTGCAGATGGTCCCGTGGACCATCACCGCAAACTTCC TGAAGCATCGCGGGATGGGATCCAGCCAGGTGGGTGGGGGACGGGCTGGG GTAGTCGTGGTCATGGTCGTTTTTCCACCTTGTGTCGATGTTGATGTCCA CCTACCACGTATATAATTTCTTTCCCTCTCTCTGCTTGTCTATAGTTTTT TGTTGGATTCTCCCACCTACCGTACCCTACCCTACCATAAATATGTGGTT GTATCTATCAGAATGTGTCTATGTTATTTTTTTGTAGAGTTTTTTTTCTT CTTCACATTTTCAGTAAATTATACCAGAATTTTTCCATGTTATTTTTTTT GTAGATGTTTTTTTCTTCTTCACGTTTTCAGTAAATTATACCAGAATGTG TCCATTTTATTTTTTTTGTATATTTTTTTCTTCTTCTTTACATTTTCAGT AAATTATCTGCACCATACTTGTGTATAATACTAGGGTATGTAATACTGCT GTGTAGTGGTATGTCACGTGGGTGCGTCGCGTCTCTCTCTTAATCTATCT TTTCCAATTTTAACATAAATATGGTTTCGATGCTGAACCTCTTTAAACCC TAATAATGCTTCCAAACGAGGAATGGACTCGTAGATGACAGCCCTGTCCC CCCATGGGCATCGGCACCGCGACAGGCTACGTGTCTCCTGAGGCTGAGCG GTGATGGCGACCCGTCGGGCCGTGGAGAAGGCTTCAGCTTCCTTTTGAGA CAGGCAGAGCAGGCCAAGACGTCGTCGGCGCTTACGTCGAGTCAGAAAAT CGCGGCGGACAGGAGCGTGCAAAAGGTCACCGGGACCAGCGGCGACTTGA GG
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Coding sequence (CDS) from alignment at H-elongata_contig75317:396..1297-

>mRNA_H-elongata_contig75317.15214.1 ID=mRNA_H-elongata_contig75317.15214.1|Name=mRNA_H-elongata_contig75317.15214.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig75317:396..1297- (Himanthalia elongata Himel1 dioecious)
ATGACCGAGCTCAAGCGCGTCCGCGCCGTGGCTCAGTACATGCACAAGGA
GTTGCAGATGGTCCCGTGGACCATCACCGCAAACTTCCTGAAGCATCGCG
GGATGGGATCCAGCCAGATGACCGAGCTCAAGCGCGTCCGCGCCGTGGCT
CAGTACATGCACAAGGAGTTGCAGATGGTCCCGTGGACCATCACCGCAAA
CTTCCTGAAGCATCGCGGGATGGGATCCAGCCAGGCTACGTGTCTCCTGA
GGCTGAGCGGTGATGGCGACCCGTCGGGCCGTGGAGAAGGCTTCAGCTTC
CTTTTGAGACAGGCAGAGCAGGCCAAGACGTCGTCGGCGCTTACGTCGAG
TCAGAAAATCGCGGCGGACAGGAGCGTGCAAAAGGTCACCGGGACCAGCG
GCGACTTGAGGGCTACGTGTCTCCTGAGGCTGAGCGGTGATGGCGACCCG
TCGGGCCGTGGAGAAGGCTTCAGCTTCCTTTTGAGACAGGCAGAGCAGGC
CAAGACGTCGTCGGCGCTTACGTCGAGTCAGAAAATCGCGGCGGACAGGA
GCGTGCAAAAGGTCACCGGGACCAGCGGCGACTTGAGG
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