prot_H-elongata_contig75269.15209.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig75269.15209.1
Unique Nameprot_H-elongata_contig75269.15209.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length191
Homology
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.920e-29
Identity = 76/196 (38.78%), Postives = 103/196 (52.55%), Query Frame = 0
Query:    1 MKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYIT---PQELSIKYLRTDKGGEFEGEFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIIN--VTREKLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGAMEYAPRSVREHKMTPKGEKYAFMG 191
            MK  S+GGN Y +I  DD++R+  V F+K KSD        + +Y T   P E+ I   RTD GGEF+G+F        I  E TPP TP+YNGVAERALGL+ + A+A   +   +         LWA+A+  AC   N + T S +G KS YE++           PF       +S R+ K  PKGEK  ++G
Sbjct:   32 MKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIA--RTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF-LKPAVFKSRRKAKSQPKGEKGWYLG 224          
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.060e-28
Identity = 75/196 (38.27%), Postives = 101/196 (51.53%), Query Frame = 0
Query:    1 MKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEY---ITPQELSIKYLRTDKGGEFEGEFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIIN--VTREKLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGAMEYAPRSVREHKMTPKGEKYAFMG 191
            M+  S+GGN Y +I  DD TR+  V F+K KSD  AA    + +Y     P E+ +   RTD GGEF+G+F        I  E TPP+TP+YNGVAERALGLL + A+A   +   +         LWA+A+  AC   N + TT   G KSP EL+ G         PF       +S R+ +  P+  K   +G
Sbjct:  205 MQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVA--RTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF-LKPLVFKSRRKARSQPRARKDGTLG 397          
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 7.650e-28
Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 0
Query:    5 SLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYIT---PQELSIKYLRTDKGGEF-EGEFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIINVTRE--KLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGAMEYAPRSV-REHKMTPKGEKYAFMG 191
            SLGG  Y +I  DDYTR+  V F+K KSD   A    + E      P ++ +  +R+D GGEF EGEF R      I  E TP  +P+YNGVAERALGL+++ A+A   +   +         LWA+A+ ++C+  N + TTS    KSPYE+W G         PF  ++ A   V R HK  PK +K  ++G
Sbjct:  748 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 937          
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A0A9WVR3_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WVR3_LYGHE)

HSP 1 Score: 117 bits (294), Expect = 7.680e-28
Identity = 68/194 (35.05%), Postives = 106/194 (54.64%), Query Frame = 0
Query:    1 MKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYITPQELSIKYLRTDKGGEFEG-EFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIINVTREKLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFG--AMEYAPRSVREHKMTPKGEKYAFMG 191
            M+ +S+GG+ Y ++ VDD++R+  V F+  K++    +   I       E  +K LR+D GGEF   + ++KL    I H+ T P +P  NGVAERA+  + EKA +++ + D       +K WA+A+  A  + N+S T +    K+PYE+W+G      HLR FG  AM   P S +  K  PK +   F+G
Sbjct:  143 MEEASIGGSRYFLVLVDDFSRYTHVYFMSNKNEVNGLIEEFISLVERQTEKKMKILRSDGGGEFVNKQLKKKLAAEGIKHQTTVPYSPSQNGVAERAIRSIVEKARSMLADAD-----LPKKFWAEAVATAVYLNNRSPTRANADSKTPYEIWNGTKPNLQHLRVFGCKAMYQVP-SQKRRKWDPKSQTSIFVG 330          
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 7.690e-28
Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 0
Query:    5 SLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYIT---PQELSIKYLRTDKGGEF-EGEFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIINVTRE--KLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGAMEYAPRSV-REHKMTPKGEKYAFMG 191
            SLGG  Y +I  DDYTR+  V F+K KSD   A    + E      P ++ +  +R+D GGEF EGEF R      I  E TP  +P+YNGVAERALGL+++ A+A   +   +         LWA+A+ ++C+  N + TTS    KSPYE+W G         PF  ++ A   V R HK  PK +K  ++G
Sbjct:  583 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 772          
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 7.720e-28
Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 0
Query:    5 SLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYIT---PQELSIKYLRTDKGGEF-EGEFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIINVTRE--KLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGAMEYAPRSV-REHKMTPKGEKYAFMG 191
            SLGG  Y +I  DDYTR+  V F+K KSD   A    + E      P ++ +  +R+D GGEF EGEF R      I  E TP  +P+YNGVAERALGL+++ A+A   +   +         LWA+A+ ++C+  N + TTS    KSPYE+W G         PF  ++ A   V R HK  PK +K  ++G
Sbjct:  596 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 785          
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 7.750e-28
Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 0
Query:    5 SLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYIT---PQELSIKYLRTDKGGEF-EGEFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIINVTRE--KLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGAMEYAPRSV-REHKMTPKGEKYAFMG 191
            SLGG  Y +I  DDYTR+  V F+K KSD   A    + E      P ++ +  +R+D GGEF EGEF R      I  E TP  +P+YNGVAERALGL+++ A+A   +   +         LWA+A+ ++C+  N + TTS    KSPYE+W G         PF  ++ A   V R HK  PK +K  ++G
Sbjct:  739 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 928          
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.270e-27
Identity = 68/157 (43.31%), Postives = 89/157 (56.69%), Query Frame = 0
Query:    1 MKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEY---ITPQELSIKYLRTDKGGEFEGEFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIIN--VTREKLWAQAMLFACDVTNKSVTTSTDGVKSPYELW 152
            M+  S+GGN Y +I  DD TR+  V F+K KSD  AA    + +Y     P E+ +   RTD GGEF+G+F        I  E TPP+TP+YNGVAERALGLL + A+A   +   +         LWA+A+  AC   N + TT   G KSPYEL+
Sbjct:    1 MQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVA--RTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPYELF 155          
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.870e-27
Identity = 76/195 (38.97%), Postives = 103/195 (52.82%), Query Frame = 0
Query:    2 KHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYITPQELS-IKYLRTDKGGEF-EGEFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIIN--VTREKLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGAMEYAPRSV-REHKMTPKGEKYAFMG 191
            +  SLGG  Y +I  DDYTR+  V F+K KSD   A    + E       S +  +R+D GGEF EGEF R      I  E TP  +P+YNGVAERALGL+++ AIA   +   +         LWA+A+ ++C+  N + TTS    KSPYE+W G         PF  ++ A   V R HK  P  +K  ++G
Sbjct:  378 RAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPTAQKCFYLG 570          
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.520e-27
Identity = 77/199 (38.69%), Postives = 104/199 (52.26%), Query Frame = 0
Query:    1 MKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYIT---PQELSIKYLRTDKGGEFEGEFQRKLDMRSITHEHTPPDTPQYNGVAERALG---LLREKAIALMEELDNIIN--VTREKLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGAMEYAPRSVREHKMTPKGEKYAFMG 191
            MK  S+GGN Y +I  DD++R+  V F+K KSD    L   + +Y T   P E+ I   RTD GGEF+G+F        I  E TPP TP+YNGVAERALG   L+ + A+A   +   +         LWA+A+  AC   N + T S +G KS YE++           PF       +S R+ K  PKGEK  ++G
Sbjct:  656 MKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYIA--RTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF-LKPAMLKSRRKAKSQPKGEKGWYVG 851          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAM7_9PHAE6.920e-2938.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE2.060e-2838.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTI6_9PHAE7.650e-2839.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A0A9WVR3_LYGHE7.680e-2835.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JZQ8_9PHAE7.690e-2839.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE7.720e-2839.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE7.750e-2839.18Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5KKB4_9PHAE1.270e-2743.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1N9_9PHAE1.870e-2738.97Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JM30_9PHAE3.520e-2738.69Integrase catalytic domain-containing protein (Fra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..177
e-value: 2.3E-20
score: 74.6
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 6..102
e-value: 2.4E-14
score: 53.5
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..156
score: 17.715
NoneNo IPR availablePANTHERPTHR11439:SF284coord: 1..183
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..183
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 8..163

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75269contigH-elongata_contig75269:1080..1652 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75269.15209.1mRNA_H-elongata_contig75269.15209.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig75269 1080..1667 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig75269.15209.1 ID=prot_H-elongata_contig75269.15209.1|Name=mRNA_H-elongata_contig75269.15209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
MKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYITPQE
LSIKYLRTDKGGEFEGEFQRKLDMRSITHEHTPPDTPQYNGVAERALGLL
REKAIALMEELDNIINVTREKLWAQAMLFACDVTNKSVTTSTDGVKSPYE
LWSGKISTADHLRPFGAMEYAPRSVREHKMTPKGEKYAFMG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf