mRNA_H-elongata_contig75269.15209.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.880e-31 Identity = 79/201 (39.30%), Postives = 107/201 (53.23%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYIT---PQELSIKYLRTDKGGEFEGEFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIIN--VTREKLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGAMEYAPRSVREHKMTPKGEKYAFMG 588
D+GG MK S+GGN Y +I DD++R+ V F+K KSD + +Y T P E+ I RTD GGEF+G+F I E TPP TP+YNGVAERALGL+ + A+A + + LWA+A+ AC N + T S +G KS YE++ PF +S R+ K PKGEK ++G
Sbjct: 27 DLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIA--RTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF-LKPAVFKSRRKAKSQPKGEKGWYLG 224
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A0A9WVR3_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WVR3_LYGHE) HSP 1 Score: 125 bits (314), Expect = 1.240e-30 Identity = 72/199 (36.18%), Postives = 110/199 (55.28%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYITPQELSIKYLRTDKGGEFEG-EFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIINVTREKLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFG--AMEYAPRSVREHKMTPKGEKYAFMG 588
DV GPM+ +S+GG+ Y ++ VDD++R+ V F+ K++ + I E +K LR+D GGEF + ++KL I H+ T P +P NGVAERA+ + EKA +++ + D +K WA+A+ A + N+S T + K+PYE+W+G HLR FG AM P S + K PK + F+G
Sbjct: 138 DVCGPMEEASIGGSRYFLVLVDDFSRYTHVYFMSNKNEVNGLIEEFISLVERQTEKKMKILRSDGGGEFVNKQLKKKLAAEGIKHQTTVPYSPSQNGVAERAIRSIVEKARSMLADAD-----LPKKFWAEAVATAVYLNNRSPTRANADSKTPYEIWNGTKPNLQHLRVFGCKAMYQVP-SQKRRKWDPKSQTSIFVG 330
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 123 bits (309), Expect = 4.550e-30 Identity = 77/201 (38.31%), Postives = 105/201 (52.24%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEY---ITPQELSIKYLRTDKGGEFEGEFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIIN--VTREKLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGAMEYAPRSVREHKMTPKGEKYAFMG 588
++GG M+ S+GGN Y +I DD TR+ V F+K KSD AA + +Y P E+ + RTD GGEF+G+F I E TPP+TP+YNGVAERALGLL + A+A + + LWA+A+ AC N + TT G KSP EL+ G PF +S R+ + P+ K +G
Sbjct: 200 NLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVA--RTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF-LKPLVFKSRRKARSQPRARKDGTLG 397
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.610e-29 Identity = 80/204 (39.22%), Postives = 108/204 (52.94%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYIT---PQELSIKYLRTDKGGEFEGEFQRKLDMRSITHEHTPPDTPQYNGVAERALG---LLREKAIALMEELDNIIN--VTREKLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGAMEYAPRSVREHKMTPKGEKYAFMG 588
D+GG MK S+GGN Y +I DD++R+ V F+K KSD L + +Y T P E+ I RTD GGEF+G+F I E TPP TP+YNGVAERALG L+ + A+A + + LWA+A+ AC N + T S +G KS YE++ PF +S R+ K PKGEK ++G
Sbjct: 651 DLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYIA--RTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF-LKPAMLKSRRKAKSQPKGEKGWYVG 851
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A1Y1NAZ7_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1NAZ7_PHOPY) HSP 1 Score: 124 bits (311), Expect = 1.960e-29 Identity = 78/199 (39.20%), Postives = 110/199 (55.28%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYITPQELSIKYLRTDKGGEFEG-EFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIINVTREKLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGA--MEYAPRSVREHKMTPKGEKYAFMG 588
D+ GPM+ SLGG Y + F+DDY+R V FVK K +T + Q ++IK LRTD GGE+ G +FQ L I H+ T TP+ NG+AER L EKA LM + +N+ + LWA+A AC + N+S++ K+PYE+W+GK HLR +G+ M + PR+ R K K K+ +G
Sbjct: 238 DICGPMETVSLGGARYFLTFIDDYSRMCFVYFVKTKDETFEKFKNFKTLVENQQNVTIKVLRTDNGGEYCGKDFQAYLKDAGIIHQRTNSHTPEQNGLAERFNRTLVEKAKCLMFD-ENV----SKSLWAEACNTACYLKNRSISAGIS--KTPYEIWTGKKPNVSHLRVYGSVVMVHVPRANRR-KWDHKSVKHILVG 428
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A1Y1N668_PHOPY (Uncharacterized protein (Fragment) n=3 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N668_PHOPY) HSP 1 Score: 124 bits (311), Expect = 2.110e-29 Identity = 78/199 (39.20%), Postives = 110/199 (55.28%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYITPQELSIKYLRTDKGGEFEG-EFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIINVTREKLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGA--MEYAPRSVREHKMTPKGEKYAFMG 588
D+ GPM+ SLGG Y + F+DDY+R V FVK K +T + Q ++IK LRTD GGE+ G +FQ L I H+ T TP+ NG+AER L EKA LM + +N+ + LWA+A AC + N+S++ K+PYE+W+GK HLR +G+ M + PR+ R K K K+ +G
Sbjct: 471 DICGPMETVSLGGARYFLTFIDDYSRMCFVYFVKTKDETFEKFKNFKTLVENQQNVTIKVLRTDNGGEYCGKDFQAYLKDAGIIHQRTNSHTPEQNGLAERFNRTLVEKAKCLMFD-ENV----SKSLWAEACNTACYLKNRSISAGIS--KTPYEIWTGKKPNVSHLRVYGSVVMVHVPRANRR-KWDHKSVKHILVG 661
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A1Y1N932_PHOPY (Uncharacterized protein (Fragment) n=3 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N932_PHOPY) HSP 1 Score: 124 bits (311), Expect = 2.180e-29 Identity = 78/199 (39.20%), Postives = 110/199 (55.28%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYITPQELSIKYLRTDKGGEFEG-EFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIINVTREKLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGA--MEYAPRSVREHKMTPKGEKYAFMG 588
D+ GPM+ SLGG Y + F+DDY+R V FVK K +T + Q ++IK LRTD GGE+ G +FQ L I H+ T TP+ NG+AER L EKA LM + +N+ + LWA+A AC + N+S++ K+PYE+W+GK HLR +G+ M + PR+ R K K K+ +G
Sbjct: 471 DICGPMETVSLGGARYFLTFIDDYSRMCFVYFVKTKDETFEKFKNFKTLVENQQNVTIKVLRTDNGGEYCGKDFQAYLKDAGIIHQRTNSHTPEQNGLAERFNRTLVEKAKCLMFD-ENV----SKSLWAEACNTACYLKNRSISAGIS--KTPYEIWTGKKPNVSHLRVYGSVVMVHVPRANRR-KWDHKSVKHILVG 661
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 124 bits (310), Expect = 3.040e-29 Identity = 78/203 (38.42%), Postives = 109/203 (53.69%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYIT---PQELSIKYLRTDKGGEF-EGEFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIINVTRE--KLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGAMEYAPRSV-REHKMTPKGEKYAFMG 588
D+ G + SLGG Y +I DDYTR+ V F+K KSD A + E P ++ + +R+D GGEF EGEF R I E TP +P+YNGVAERALGL+++ A+A + + LWA+A+ ++C+ N + TTS KSPYE+W G PF ++ A V R HK PK +K ++G
Sbjct: 739 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 937
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 124 bits (310), Expect = 3.050e-29 Identity = 78/203 (38.42%), Postives = 109/203 (53.69%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYIT---PQELSIKYLRTDKGGEF-EGEFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIINVTRE--KLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGAMEYAPRSV-REHKMTPKGEKYAFMG 588
D+ G + SLGG Y +I DDYTR+ V F+K KSD A + E P ++ + +R+D GGEF EGEF R I E TP +P+YNGVAERALGL+++ A+A + + LWA+A+ ++C+ N + TTS KSPYE+W G PF ++ A V R HK PK +K ++G
Sbjct: 574 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 772
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 124 bits (310), Expect = 3.060e-29 Identity = 78/203 (38.42%), Postives = 109/203 (53.69%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYIT---PQELSIKYLRTDKGGEF-EGEFQRKLDMRSITHEHTPPDTPQYNGVAERALGLLREKAIALMEELDNIINVTRE--KLWAQAMLFACDVTNKSVTTSTDGVKSPYELWSGKISTADHLRPFGAMEYAPRSV-REHKMTPKGEKYAFMG 588
D+ G + SLGG Y +I DDYTR+ V F+K KSD A + E P ++ + +R+D GGEF EGEF R I E TP +P+YNGVAERALGL+++ A+A + + LWA+A+ ++C+ N + TTS KSPYE+W G PF ++ A V R HK PK +K ++G
Sbjct: 587 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF--LKPAVYKVKRTHKSEPKAQKCFYLG 785 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75269.15209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig75269.15209.1 >prot_H-elongata_contig75269.15209.1 ID=prot_H-elongata_contig75269.15209.1|Name=mRNA_H-elongata_contig75269.15209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp MKHSSLGGNSYVVIFVDDYTRFKVVKFVKRKSDTTAALLSLIVEYITPQEback to top mRNA from alignment at H-elongata_contig75269:1080..1667- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig75269.15209.1 ID=mRNA_H-elongata_contig75269.15209.1|Name=mRNA_H-elongata_contig75269.15209.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=588bp|location=Sequence derived from alignment at H-elongata_contig75269:1080..1667- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig75269:1080..1667- >mRNA_H-elongata_contig75269.15209.1 ID=mRNA_H-elongata_contig75269.15209.1|Name=mRNA_H-elongata_contig75269.15209.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig75269:1080..1667- (Himanthalia elongata Himel1 dioecious)back to top |