mRNA_H-elongata_contig75234.15206.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75234.15206.1
Unique NamemRNA_H-elongata_contig75234.15206.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75234.15206.1 vs. uniprot
Match: D8LLR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR4_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 4.680e-25
Identity = 65/134 (48.51%), Postives = 81/134 (60.45%), Query Frame = 1 
Query:   19 PSNPTVNDDMLRWMSLPSR-------SSLGDDAGAS--SSPSGRSFHCVVFHGGSCYVTGGSDGNRKFGDMWRFPARESPPPLTTLAARALASNLAVLDGGDGSGAVESSIYLQDGVGKPQHAGRIGFLKNTTE 393
            P+   V  + L W+SLPS        ++  ++AG +  SSP+GRSFHC  FHGG+CY+TGGSDG RKFGDMWRF ARE+PPPLTTLAARA  S       G G G V  +     G GK +  G  G L+   +
Sbjct:  211 PAAVPVVGEKLSWVSLPSGQGGSAAFAANAEEAGRATPSSPTGRSFHCAFFHGGACYITGGSDGARKFGDMWRFCARETPPPLTTLAARAFVSGATARRNGGGRGRVGGA----GGDGKCELGGLPGELREALQ 340
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BLAST of mRNA_H-elongata_contig75234.15206.1 vs. uniprot
Match: A0A6H5JG58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG58_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.430e-24
Identity = 65/134 (48.51%), Postives = 82/134 (61.19%), Query Frame = 1 
Query:   19 PSNPTVNDDMLRWMSLPS----RSSLGDDAGAS-----SSPSGRSFHCVVFHGGSCYVTGGSDGNRKFGDMWRFPARESPPPLTTLAARALASNLAVLDGGDGSGAVESSIYLQDGVGKPQHAGRIGFLKNTTE 393
            P+   +  + L W+SLPS     ++   + GA+     S+P+GRSFHC  FHGG+CYVTGGSDG RKFGDMWRF ARE+PPPLTTLAARA  S       G G G+V  +     G GK + AG  G L+   +
Sbjct:  605 PAAVPMVGEKLSWVSLPSDQRGSAAFATNTGAAGRATPSAPTGRSFHCAFFHGGACYVTGGSDGARKFGDMWRFCARETPPPLTTLAARAFVSGATARRNGGGRGSVGGA----GGDGKCELAGLPGELREALQ 734
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BLAST of mRNA_H-elongata_contig75234.15206.1 vs. uniprot
Match: A0A836CMQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMQ1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.260e-10
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:  109 SPSGRSFHCVVFHGGSCYVTGGSDGNRKFGDMWRFPARESPPPLTTLAARALASN 273
            SPS RSFH  VF  G  Y+  GS+G+ KF D+WR+  RE+PPPL TLAARA+ +N
Sbjct:  234 SPSARSFHGSVFTRGCIYILSGSNGSEKFADVWRYAVRETPPPLLTLAARAVLAN 288
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BLAST of mRNA_H-elongata_contig75234.15206.1 vs. uniprot
Match: A0A836CLJ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLJ1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.200e-8
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:  109 SPSGRSFHCVVFHGGSCYVTGGSDGNRKFGDMWRFP-ARESPPPLTTLAARAL 264
            SPS RSFH  +F  GS YV  GS+G+ KF D+WR+   R++PPPL TLAARAL
Sbjct:  343 SPSARSFHGSIFSAGSVYVFSGSNGSEKFSDVWRYQQVRQTPPPLLTLAARAL 395
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BLAST of mRNA_H-elongata_contig75234.15206.1 vs. uniprot
Match: A0A7S2UZD9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.010e-6
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:  112 PSGRSFHCVVFHGGSCYVTGGSDGNRKFGDMWRFPARESPPPLTTLAARALASN 273
            P+ R+FHC  F  G+ Y+ GGSDG  +  D+WR+   E+P PLT LA  AL  N
Sbjct:  336 PAPRAFHCSCFFEGAIYIFGGSDGESRHCDVWRYTLEENPLPLTELALAALGKN 389
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75234.15206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LLR4_ECTSI4.680e-2548.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG58_9PHAE2.430e-2448.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CMQ1_9STRA5.260e-1058.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CLJ1_9STRA1.200e-860.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UZD9_9STRA4.010e-648.15Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75234contigH-elongata_contig75234:1768..2568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue6.5e-22
Seed eggNOG ortholog2880.D8LLR4
KEGG koko:K20285
EggNOG free text desc.nitrile biosynthetic process
EggNOG OGsKOG0379@1,KOG0379@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size778
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75234.15206.1prot_H-elongata_contig75234.15206.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75234 1813..2273 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.6482406-UTR-H-elongata_contig75234:1767..18121622931157.6482406-UTR-H-elongata_contig75234:1767..1812Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75234 1768..1812 +
1691679721.934743-UTR-H-elongata_contig75234:1767..18121691679721.934743-UTR-H-elongata_contig75234:1767..1812Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75234 1768..1812 +
1622931157.7106588-UTR-H-elongata_contig75234:2273..25681622931157.7106588-UTR-H-elongata_contig75234:2273..2568Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75234 2274..2568 +
1691679721.9701712-UTR-H-elongata_contig75234:2273..25681691679721.9701712-UTR-H-elongata_contig75234:2273..2568Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75234 2274..2568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.6689088-CDS-H-elongata_contig75234:1812..21041622931157.6689088-CDS-H-elongata_contig75234:1812..2104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75234 1813..2104 +
1691679721.9466279-CDS-H-elongata_contig75234:1812..21041691679721.9466279-CDS-H-elongata_contig75234:1812..2104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75234 1813..2104 +
1622931157.6869764-CDS-H-elongata_contig75234:2127..22731622931157.6869764-CDS-H-elongata_contig75234:2127..2273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75234 2128..2273 +
1691679721.959679-CDS-H-elongata_contig75234:2127..22731691679721.959679-CDS-H-elongata_contig75234:2127..2273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75234 2128..2273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75234.15206.1

>prot_H-elongata_contig75234.15206.1 ID=prot_H-elongata_contig75234.15206.1|Name=mRNA_H-elongata_contig75234.15206.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MLRWMSLPSRSSLGDDAGASSSPSGRSFHCVVFHGGSCYVTGGSDGNRKF
GDMWRFPARESPPPLTTLAARALASNLAVLDGGDGSGAVESSIYLQDGVG
KPQHAGRIGFLKNTTESEESVQGARMNFRLLQDRRLVAVDDVETN*
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mRNA from alignment at H-elongata_contig75234:1768..2568+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75234.15206.1 ID=mRNA_H-elongata_contig75234.15206.1|Name=mRNA_H-elongata_contig75234.15206.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=801bp|location=Sequence derived from alignment at H-elongata_contig75234:1768..2568+ (Himanthalia elongata Himel1 dioecious)
CGAGGTCTTCAGGAACGCCCTTCCAACCCCACCGTGAACGACGACATGTT
GCGGTGGATGTCGCTGCCCAGCAGGTCGAGCCTTGGAGACGACGCCGGTG
CGTCTTCCTCTCCTTCGGGGCGGTCGTTCCACTGCGTGGTGTTCCACGGA
GGCTCGTGCTACGTTACCGGAGGGTCGGACGGCAACCGCAAGTTCGGGGA
CATGTGGAGGTTTCCCGCCCGCGAGAGCCCTCCGCCGCTGACAACATTGG
CGGCGCGAGCTTTGGCTTCGAACCTGGCTGTGTTGGACGGCGGCGATGGT
AGCGGCGCCGTGGAATCATCGATATATTTGCAGGACGGTGTGCCCACGGA
GATTCGAGAGGCGTTGGCAAACCTCAACATGCAGGCAGAATTGGTTTTCT
GAAGAATACGACGGAAAGCGAGGAAAGCGTTCAAGGCGCCAGGATGAATT
TTCGGTTGTTGCAAGATCGGAGACTGGTGGCAGTGGATGATGTCGAAACG
AACTGAGGCTTTCATAGAGGCGTCGGAAAAGAACAGTGGAAATGGTTTAA
CACGGAACGGCGGGGTGGGGAGGATTGGTGCCTTTCTTCTGAAGATTTTG
AAGCAATCTCTATGATGGCATTCGACACCGTAAAGATGTGAACTAAACAT
CTGGAGTACTGGTGGTAAGACAGCCAGCCTGGTCAGAGCATTGATGGAAT
AAAAAGTTGTACTGGTATTGGTAAAGGAGGCCTTGGTTTGGCCCAGAAGG
CAAAGAGGGTCGCAATTGTATTCGAGGCACCACTTAACCTTCTCACGTCT
T
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Coding sequence (CDS) from alignment at H-elongata_contig75234:1768..2568+

>mRNA_H-elongata_contig75234.15206.1 ID=mRNA_H-elongata_contig75234.15206.1|Name=mRNA_H-elongata_contig75234.15206.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig75234:1768..2568+ (Himanthalia elongata Himel1 dioecious)
ATGTTGCGGTGGATGTCGCTGCCCAGCAGGTCGAGCCTTGGAGACGACGC
CGGTGCGTCTTCCTCTCCTTCGGGGCGGTCGTTCCACTGCGTGGTGTTCC
ACGGAGGCTCGTGCTACGTTACCGGAGGGTCGGACGGCAACCGCAAGTTC
GGGGACATGTGGAGGTTTCCCGCCCGCGAGAGCCCTCCGCCGCTGACAAC
ATTGGCGGCGCGAGCTTTGGCTTCGAACCTGGCTGTGTTGGACGGCGGCG
ATGGTAGCGGCGCCGTGGAATCATCGATATATTTGCAGGACGATGTTGCG
GTGGATGTCGCTGCCCAGCAGGTCGAGCCTTGGAGACGACGCCGGTGCGT
CTTCCTCTCCTTCGGGGCGGTCGTTCCACTGCGTGGTGTTCCACGGAGGC
TCGTGCTACGTTACCGGAGGGTCGGACGGCAACCGCAAGTTCGGGGACAT
GTGGAGGTTTCCCGCCCGCGAGAGCCCTCCGCCGCTGACAACATTGGCGG
CGCGAGCTTTGGCTTCGAACCTGGCTGTGTTGGACGGCGGCGATGGTAGC
GGCGCCGTGGAATCATCGATATATTTGCAGGACGGCGTTGGCAAACCTCA
ACATGCAGGCAGAATTGGTTTTCTGAAGAATACGACGGAAAGCGAGGAAA
GCGTTCAAGGCGCCAGGATGAATTTTCGGTTGTTGCAAGATCGGAGACTG
GTGGCAGTGGATGATGTCGAAACGAACTGAGCGTTGGCAAACCTCAACAT
GCAGGCAGAATTGGTTTTCTGAAGAATACGACGGAAAGCGAGGAAAGCGT
TCAAGGCGCCAGGATGAATTTTCGGTTGTTGCAAGATCGGAGACTGGTGG
CAGTGGATGATGTCGAAACGAACTGA
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