mRNA_H-elongata_contig75192.15200.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig75192.15200.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE) HSP 1 Score: 167 bits (423), Expect = 9.710e-44 Identity = 89/195 (45.64%), Postives = 125/195 (64.10%), Query Frame = 1
Query: 301 SRQAYDPAERQWRVVRMITAYLSKTKDLRLVLAKDSNQQLSVCVDANYANKDNDRRSVS*VAVMVGGTVLNGSTTTQHCVTLSTSEAEYVAMAQGAKAALFTKAVIDFLQSKLVNETIDLFEDNQGAIVTTENPISEGRTKHIDFFYHFIRELVECKVLSIQ*TESSNQYVDILTKPLGLETFARHR*FLMNLPE 885
+R A+ PAER W+ + I AYL +T+DL + + S L V VDA+YA+ + DRRSVS +A VGGTV++ + TQ V+LS++EAEY+A +G K ALF +AV+ F+ + +I + EDNQGA+ +NP+S R+KHID YHFIR L +SI+ +S Q+ D+LTK + HR LMNLPE
Sbjct: 188 ARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFVSTSEQHADVLTKAHSKSSLQYHRRKLMNLPE 381
BLAST of mRNA_H-elongata_contig75192.15200.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE) HSP 1 Score: 169 bits (428), Expect = 8.850e-43 Identity = 90/195 (46.15%), Postives = 127/195 (65.13%), Query Frame = 1
Query: 301 SRQAYDPAERQWRVVRMITAYLSKTKDLRLVLAKDSNQQLSVCVDANYANKDNDRRSVS*VAVMVGGTVLNGSTTTQHCVTLSTSEAEYVAMAQGAKAALFTKAVIDFLQSKLVNETIDLFEDNQGAIVTTENPISEGRTKHIDFFYHFIRELVECKVLSIQ*TESSNQYVDILTKPLGLETFARHR*FLMNLPE 885
+R A+ PAER W+ + I AYL +T+DL + + S L+V VDA+YA+ + DRRSVS +A VGGTV++ + TQ V+LS++EAEY+A +G K ALF +AV+ F+ + +I + EDNQGA+ +NP+S R+KHID YHFIR L +SI+ +S Q+ D+LTK L + HR LMNLPE
Sbjct: 403 ARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 596
BLAST of mRNA_H-elongata_contig75192.15200.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE) HSP 1 Score: 169 bits (428), Expect = 1.160e-41 Identity = 90/195 (46.15%), Postives = 127/195 (65.13%), Query Frame = 1
Query: 301 SRQAYDPAERQWRVVRMITAYLSKTKDLRLVLAKDSNQQLSVCVDANYANKDNDRRSVS*VAVMVGGTVLNGSTTTQHCVTLSTSEAEYVAMAQGAKAALFTKAVIDFLQSKLVNETIDLFEDNQGAIVTTENPISEGRTKHIDFFYHFIRELVECKVLSIQ*TESSNQYVDILTKPLGLETFARHR*FLMNLPE 885
+R A+ PAER W+ + I AYL +T+DL + + S L+V VDA+YA+ + DRRSVS +A VGGTV++ + TQ V+LS++EAEY+A +G K ALF +AV+ F+ + +I + EDNQGA+ +NP+S R+KHID YHFIR L +SI+ +S Q+ D+LTK L + HR LMNLPE
Sbjct: 1382 ARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 1575
BLAST of mRNA_H-elongata_contig75192.15200.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE) HSP 1 Score: 169 bits (427), Expect = 1.410e-41 Identity = 90/195 (46.15%), Postives = 126/195 (64.62%), Query Frame = 1
Query: 301 SRQAYDPAERQWRVVRMITAYLSKTKDLRLVLAKDSNQQLSVCVDANYANKDNDRRSVS*VAVMVGGTVLNGSTTTQHCVTLSTSEAEYVAMAQGAKAALFTKAVIDFLQSKLVNETIDLFEDNQGAIVTTENPISEGRTKHIDFFYHFIRELVECKVLSIQ*TESSNQYVDILTKPLGLETFARHR*FLMNLPE 885
+R A+ PAER W+ + I AYL +T+DL + + S L V VDA+YA+ + DRRSVS +A VGGTV++ + TQ V+LS++EAEY+A +G K ALF +AV+ F+ + +I + EDNQGA+ +NP+S R+KHID YHFIR L +SI+ +S Q+ D+LTK L + HR LMNLPE
Sbjct: 1002 ARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 1195
BLAST of mRNA_H-elongata_contig75192.15200.1 vs. uniprot
Match: A0A6H5KGI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI0_9PHAE) HSP 1 Score: 161 bits (408), Expect = 1.560e-41 Identity = 85/195 (43.59%), Postives = 124/195 (63.59%), Query Frame = 1
Query: 301 SRQAYDPAERQWRVVRMITAYLSKTKDLRLVLAKDSNQQLSVCVDANYANKDNDRRSVS*VAVMVGGTVLNGSTTTQHCVTLSTSEAEYVAMAQGAKAALFTKAVIDFLQSKLVNETIDLFEDNQGAIVTTENPISEGRTKHIDFFYHFIRELVECKVLSIQ*TESSNQYVDILTKPLGLETFARHR*FLMNLPE 885
+R A+ PA+R W ++ I YL T+DL + + S L+V VDA+YA+ + D+RSV+ +A VGGTV++ + TQ ++LS++EAEY+A +G K ALF +AV+ F+ + +I + EDNQGAI +NP+S GRTKHID YHFI L +S++ ++ Q+ D+LTK L HR LMNLPE
Sbjct: 193 ARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DKRSVTGMATTVGGTVVSHGSKTQSILSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIHGLFRSGDISVKFVPTTEQHADLLTKALSRANLQYHRRKLMNLPE 386
BLAST of mRNA_H-elongata_contig75192.15200.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE) HSP 1 Score: 169 bits (427), Expect = 1.650e-41 Identity = 90/195 (46.15%), Postives = 126/195 (64.62%), Query Frame = 1
Query: 301 SRQAYDPAERQWRVVRMITAYLSKTKDLRLVLAKDSNQQLSVCVDANYANKDNDRRSVS*VAVMVGGTVLNGSTTTQHCVTLSTSEAEYVAMAQGAKAALFTKAVIDFLQSKLVNETIDLFEDNQGAIVTTENPISEGRTKHIDFFYHFIRELVECKVLSIQ*TESSNQYVDILTKPLGLETFARHR*FLMNLPE 885
+R A+ PAER W+ + I AYL +T+DL + + S L V VDA+YA+ + DRRSVS +A VGGTV++ + TQ V+LS++EAEY+A +G K ALF +AV+ F+ + +I + EDNQGA+ +NP+S R+KHID YHFIR L +SI+ +S Q+ D+LTK L + HR LMNLPE
Sbjct: 1705 ARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 1898
BLAST of mRNA_H-elongata_contig75192.15200.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE) HSP 1 Score: 157 bits (397), Expect = 2.560e-41 Identity = 86/195 (44.10%), Postives = 121/195 (62.05%), Query Frame = 1
Query: 301 SRQAYDPAERQWRVVRMITAYLSKTKDLRLVLAKDSNQQLSVCVDANYANKDNDRRSVS*VAVMVGGTVLNGSTTTQHCVTLSTSEAEYVAMAQGAKAALFTKAVIDFLQSKLVNETIDLFEDNQGAIVTTENPISEGRTKHIDFFYHFIRELVECKVLSIQ*TESSNQYVDILTKPLGLETFARHR*FLMNLPE 885
+R A+ PA+R W ++ I YL T+DL + + S L+V VDA+YA+ + DRRSVS +A VGGTV++ + TQ V+LS +EAEY+A G K ALF +AV F+ + +I + EDNQGAI +NP+S GRTKHID +HFIR L +S++ ++ Q+ D+LTK L + HR NLPE
Sbjct: 65 ARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYIAAEDGVKEALFVRAVQSFVVPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRASLQYHRRKPTNLPE 258
BLAST of mRNA_H-elongata_contig75192.15200.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE) HSP 1 Score: 167 bits (423), Expect = 3.120e-41 Identity = 89/195 (45.64%), Postives = 126/195 (64.62%), Query Frame = 1
Query: 301 SRQAYDPAERQWRVVRMITAYLSKTKDLRLVLAKDSNQQLSVCVDANYANKDNDRRSVS*VAVMVGGTVLNGSTTTQHCVTLSTSEAEYVAMAQGAKAALFTKAVIDFLQSKLVNETIDLFEDNQGAIVTTENPISEGRTKHIDFFYHFIRELVECKVLSIQ*TESSNQYVDILTKPLGLETFARHR*FLMNLPE 885
+R A+ PA+R W ++ I YL T+DL + + S L+V VDA+YA+ + DRRSVS +A VGGTV++ + TQ V+LS++EAEY+A +G K ALF +AV+ F+ + +I + EDNQGAI +NP+S GRTKHID YHFIR L +S++ ++ Q+ D+LTK L + HR LMNLPE
Sbjct: 661 ARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 854
BLAST of mRNA_H-elongata_contig75192.15200.1 vs. uniprot
Match: A0A6H5JQH8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH8_9PHAE) HSP 1 Score: 156 bits (395), Expect = 4.230e-41 Identity = 87/206 (42.23%), Postives = 126/206 (61.17%), Query Frame = 1
Query: 268 AEHCLCG*GSSSRQAYDPAERQWRVVRMITAYLSKTKDLRLVLAKDSNQQLSVCVDANYANKDNDRRSVS*VAVMVGGTVLNGSTTTQHCVTLSTSEAEYVAMAQGAKAALFTKAVIDFLQSKLVNETIDLFEDNQGAIVTTENPISEGRTKHIDFFYHFIRELVECKVLSIQ*TESSNQYVDILTKPLGLETFARHR*FLMNLPE 885
AE + G S+R A+ P +R W V++ I YL T DL + + S L+V VDA+YA+ DRRS+S +A VGGTV++ + TQ V+LS++EAEY+A +G K ALF + V+ F+ + +I + E NQGAI +NP+S GRTKHID +HFIR L ++++ ++ Q+ D+LTK L + HR LM LPE
Sbjct: 48 AERAIYGLKQSARHAHAPTKRHWDVIQKILVYLKGTSDLGITYQRRSGLGLAVYVDASYADTK-DRRSMSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRDVLSFVAPEPSGSSIQVLEGNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRPGDIAVKFVPTTEQHADLLTKGLSRASLQYHRRKLMILPE 252
BLAST of mRNA_H-elongata_contig75192.15200.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE) HSP 1 Score: 167 bits (423), Expect = 4.770e-41 Identity = 87/193 (45.08%), Postives = 122/193 (63.21%), Query Frame = 1
Query: 304 RQAYDPAERQWRVVRMITAYLSKTKDLRLVLAKDSNQQLSVCVDANYANKDNDRRSVS*VAVMVGGTVLNGSTTTQHCVTLSTSEAEYVAMAQGAKAALFTKAVIDFLQSKLVNETIDLFEDNQGAIVTTENPISEGRTKHIDFFYHFIRELVECKVLSIQ*TESSNQYVDILTKPLGLETFARHR*FLMNLP 882
R A+ P R W+ + I +YL+ T DL + + S L V VDA+YA++D RRSV+ +AV VGGTV++ ++ TQ V+LSTSEAEY+A +G K ALF +AV+ F+ + I + EDNQGAI +NP S R+KHID +HFIREL + +S++ + Q+ D+LTK LG HR LMN+P
Sbjct: 1053 RNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNIP 1245 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75192.15200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig75192.15200.1 >prot_H-elongata_contig75192.15200.1 ID=prot_H-elongata_contig75192.15200.1|Name=mRNA_H-elongata_contig75192.15200.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp MVGGTVLNGSTTTQHCVTLSTSEAEYVAMAQGAKAALFTKAVIDFLQSKLback to top mRNA from alignment at H-elongata_contig75192:308..1701+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig75192.15200.1 ID=mRNA_H-elongata_contig75192.15200.1|Name=mRNA_H-elongata_contig75192.15200.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1394bp|location=Sequence derived from alignment at H-elongata_contig75192:308..1701+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig75192:308..1701+ >mRNA_H-elongata_contig75192.15200.1 ID=mRNA_H-elongata_contig75192.15200.1|Name=mRNA_H-elongata_contig75192.15200.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig75192:308..1701+ (Himanthalia elongata Himel1 dioecious)back to top |