prot_H-elongata_contig75182.15198.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig75182.15198.1
Unique Nameprot_H-elongata_contig75182.15198.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length64
Homology
[Close]
BLAST of mRNA_H-elongata_contig75182.15198.1 vs. uniprot
Match: D8LKA1_ECTSI (eIF-2B GDP-GTP exchange factor subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA1_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.040e-14
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 0 
Query:    1 MVSYDCLKRWIKLRRATPKGSPERALFEQKKVQEFVKWLEDSES 44
            MVS DCL+RWI+LRRATP+GSPER LFEQK+VQ FV WLEDSES
Sbjct:  592 MVSEDCLERWIQLRRATPQGSPERGLFEQKEVQAFVAWLEDSES 635
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75182.15198.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKA1_ECTSI2.040e-1481.82eIF-2B GDP-GTP exchange factor subunit epsilon n=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016021MIF4G-like domain superfamilyGENE3D1.25.40.180coord: 1..63
e-value: 6.3E-7
score: 31.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75182contigH-elongata_contig75182:547..1154 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75182.15198.1mRNA_H-elongata_contig75182.15198.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig75182 478..1409 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig75182.15198.1 ID=prot_H-elongata_contig75182.15198.1|Name=mRNA_H-elongata_contig75182.15198.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MVSYDCLKRWIKLRRATPKGSPERALFEQKKVQEFVKWLEDSESEEDDDD
DEEDDDEEDEDND*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016021MIF4-like_sf