mRNA_H-elongata_contig75115.15190.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75115.15190.1
Unique NamemRNA_H-elongata_contig75115.15190.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75115.15190.1 vs. uniprot
Match: UPI0008540AC2 (histone H4-like n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008540AC2)

HSP 1 Score: 199 bits (507), Expect = 4.930e-63
Identity = 105/120 (87.50%), Postives = 110/120 (91.67%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*SIVRNSSHAVFFRAIA 360
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG  I     H + +R I+
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGGKFICCKRKHCIDYREIS 120
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BLAST of mRNA_H-elongata_contig75115.15190.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.920e-62
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_H-elongata_contig75115.15190.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 196 bits (499), Expect = 2.720e-62
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_H-elongata_contig75115.15190.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 197 bits (500), Expect = 3.880e-62
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   23 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_H-elongata_contig75115.15190.1 vs. uniprot
Match: B7FX68_PHATC (Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FX68_PHATC)

HSP 1 Score: 196 bits (497), Expect = 5.480e-62
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 103
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BLAST of mRNA_H-elongata_contig75115.15190.1 vs. uniprot
Match: C1MUM2_MICPC (Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1MUM2_MICPC)

HSP 1 Score: 196 bits (497), Expect = 5.480e-62
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_H-elongata_contig75115.15190.1 vs. uniprot
Match: A0A067CU13_SAPPC (Histone H4 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CU13_SAPPC)

HSP 1 Score: 196 bits (497), Expect = 5.480e-62
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVI+DSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIKDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_H-elongata_contig75115.15190.1 vs. uniprot
Match: F0W2L9_9STRA (Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID=F0W2L9_9STRA)

HSP 1 Score: 196 bits (497), Expect = 5.480e-62
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_H-elongata_contig75115.15190.1 vs. uniprot
Match: A0A7S3RVL2_9SPIT (Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3RVL2_9SPIT)

HSP 1 Score: 196 bits (497), Expect = 5.660e-62
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_H-elongata_contig75115.15190.1 vs. uniprot
Match: A0A834TLF9_9FABA (Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A834TLF9_9FABA)

HSP 1 Score: 196 bits (498), Expect = 6.870e-62
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*SI 318
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG S+
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGKSL 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75115.15190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0008540AC24.930e-6387.50histone H4-like n=1 Tax=Nanorana parkeri TaxID=125... [more]
A0A024G0M5_9STRA1.920e-62100.00Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI... [more]
H4_SOLLC2.720e-6299.03Histone H4 n=13 Tax=cellular organisms TaxID=13156... [more]
A0A3L6V663_9STRA3.880e-62100.00Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
B7FX68_PHATC5.480e-6299.03Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 Rep... [more]
C1MUM2_MICPC5.480e-6299.03Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1M... [more]
A0A067CU13_SAPPC5.480e-6299.03Histone H4 n=5 Tax=Saprolegniaceae TaxID=4764 RepI... [more]
F0W2L9_9STRA5.480e-6299.03Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A7S3RVL2_9SPIT5.660e-6299.03Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 Re... [more]
A0A834TLF9_9FABA6.870e-6296.23Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75115contigH-elongata_contig75115:2165..2700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.7
Seed ortholog evalue1.3e-48
Seed eggNOG ortholog157072.XP_008863623.1
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG3467@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size536
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931156.2439463-CDS-H-elongata_contig75115:2164..24761622931156.2439463-CDS-H-elongata_contig75115:2164..2476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75115 2165..2476 +
1691679721.3984277-CDS-H-elongata_contig75115:2164..24761691679721.3984277-CDS-H-elongata_contig75115:2164..2476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75115 2165..2476 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931156.263713-UTR-H-elongata_contig75115:2476..27001622931156.263713-UTR-H-elongata_contig75115:2476..2700Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75115 2477..2700 +
1691679721.4120102-UTR-H-elongata_contig75115:2476..27001691679721.4120102-UTR-H-elongata_contig75115:2476..2700Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75115 2477..2700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75115.15190.1prot_H-elongata_contig75115.15190.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75115 2165..2476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75115.15190.1

>prot_H-elongata_contig75115.15190.1 ID=prot_H-elongata_contig75115.15190.1|Name=mRNA_H-elongata_contig75115.15190.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at H-elongata_contig75115:2165..2700+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75115.15190.1 ID=mRNA_H-elongata_contig75115.15190.1|Name=mRNA_H-elongata_contig75115.15190.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=536bp|location=Sequence derived from alignment at H-elongata_contig75115:2165..2700+ (Himanthalia elongata Himel1 dioecious)
ATGTCTGGACGCGGAAAGGGCGGTAAAGGTTTGGGCAAAGGTGGCGCCAA
GCGCCACCGCAAAGTACTACGCGACAATATCCAGGGTATTACCAAGCCCG
CAATTCGTCGTCTGGCTCGTCGCGGTGGTGTGAAGCGTATATCTGGACTC
ATCTACGAAGAGACCCGCGGCGTGCTTAAGGTGTTCCTTGAAAACGTAAT
CCGCGACTCGGTCACGTACACCGAGCACGCTCGCAGGAAGACCGTAACCG
CCATGGACGTTGTGTACGCTCTCAAACGTCAGGGTCGTACTCTTTATGGC
TTTGGTGGCTAATCGATTGTTCGTAATAGCAGTCATGCTGTTTTTTTTCG
AGCCATCGCGAGCCCCTGTGAAAAAGTGACCAAAACGAACAATAATACCA
AACAACTACTGGTGTTTTTCAACACCACCCCCAAAAGGAAAGAAATATAT
ATCAAATATCAGGGCTTCAAGTGGACGCAGTCGCCACTTTGATGGTACAA
AGGTTAAGAAATTATTTGGGGGCGGTTAATATCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig75115:2165..2700+

>mRNA_H-elongata_contig75115.15190.1 ID=mRNA_H-elongata_contig75115.15190.1|Name=mRNA_H-elongata_contig75115.15190.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig75115:2165..2700+ (Himanthalia elongata Himel1 dioecious)
ATGTCTGGACGCGGAAAGGGCGGTAAAGGTTTGGGCAAAGGTGGCGCCAA
GCGCCACCGCAAAGTACTACGCGACAATATCCAGGGTATTACCAAGCCCG
CAATTCGTCGTCTGGCTCGTCGCGGTGGTGTGAAGCGTATATCTGGACTC
ATCTACGAAGAGACCCGCGGCGTGCTTAAGGTGTTCCTTGAAAACGTAAT
CCGCGACTCGGTCACGTACACCGAGCACGCTCGCAGGAAGACCGTAACCG
CCATGGACGTTGTGTACGCTCTCAAACGTCAGGGTCGTACTCTTTATGGC
TTTGGTGGCTAAATGTCTGGACGCGGAAAGGGCGGTAAAGGTTTGGGCAA
AGGTGGCGCCAAGCGCCACCGCAAAGTACTACGCGACAATATCCAGGGTA
TTACCAAGCCCGCAATTCGTCGTCTGGCTCGTCGCGGTGGTGTGAAGCGT
ATATCTGGACTCATCTACGAAGAGACCCGCGGCGTGCTTAAGGTGTTCCT
TGAAAACGTAATCCGCGACTCGGTCACGTACACCGAGCACGCTCGCAGGA
AGACCGTAACCGCCATGGACGTTGTGTACGCTCTCAAACGTCAGGGTCGT
ACTCTTTATGGCTTTGGTGGCTAA
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