mRNA_H-elongata_contig75112.15188.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig75112.15188.1 vs. uniprot
Match: D8LDV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDV9_ECTSI) HSP 1 Score: 240 bits (612), Expect = 6.840e-77 Identity = 110/168 (65.48%), Postives = 136/168 (80.95%), Query Frame = 1
Query: 1 VIFAEALAETALETGCILAFVGAMSYLSDSY-ANPELSEVAKLSLWVGTVFLSGAATAGPRRWLETSQLFKVDRPISEQWYAKLRKPWWNPPNWLFPVMWVPLKILQVFACYEMWDKLKDRSFLSPPLVVFALYKSLGDVWNKVFFERRSLNIGTAIISLYFSTLLVG 501
V+ EAL ETALE+G I+ FVGA YL+ Y ++ + SEVA+L+LW VF+SGAATAGP++WLE SQLF +D PI + WY LRKP WNPPNW+FP+MW+PLKILQVFACYEMWDKL+ RS ++ P+VV+ +YKSLGDVWNKVFFERR L +GT +ISLY+ TLL G
Sbjct: 94 VVLVEALVETALESGLIVGFVGAAEYLAARYLSDTKFSEVARLALWTAAVFVSGAATAGPKKWLEKSQLFNIDVPIGKDWYTNLRKPRWNPPNWVFPIMWIPLKILQVFACYEMWDKLETRSCVALPVVVYTVYKSLGDVWNKVFFERRRLKMGTVVISLYYLTLLAG 261
BLAST of mRNA_H-elongata_contig75112.15188.1 vs. uniprot
Match: A0A835YIB6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIB6_9STRA) HSP 1 Score: 104 bits (260), Expect = 3.210e-23 Identity = 56/169 (33.14%), Postives = 81/169 (47.93%), Query Frame = 1
Query: 61 VGAMSYLSDSYANPELSEVAKLSLWVGTVFLSGAATAGPRRWLETS-----------------------QLFKVDRPISEQWYAKLRKPWWNPPNWLFPVMWVPLKILQVFACYEMWDKLKD------RSFLSPPLVVFALYKSLGDVWNKVFFERRSLNIGTAIISLY 480
V A+S D+ + L+ L W VF SG + P R+ E Q VD P+ + WY LRKP W PP+++FP+ W+PLK +Q+FA +WDKL S L P+ +F + K++GD WNKV+F R L +G ++ Y
Sbjct: 216 VAAVSPKMDAASADALATGLGLMAWGAVVFGSGFLSVLPGRYREKCSAAASLXXXXXXXXXXXXXXXXVQALSVDYPLQKNWYRMLRKPRWTPPDFVFPMAWIPLKTMQMFALSLLWDKLPPGKKLIGNSLLDSPVALFVVNKAIGDTWNKVWFGRHQLGLGVTVVGAY 384
BLAST of mRNA_H-elongata_contig75112.15188.1 vs. uniprot
Match: A0A7S0IPT2_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IPT2_9EUKA) HSP 1 Score: 97.8 bits (242), Expect = 5.480e-22 Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 1
Query: 208 KVDRPISEQWYAKLRKPWWNPPNWLFPVMWVPLKILQVFACYEMWDKLKDRSFLSPPLVVFALYKSLGDVWNKVFFERRSLNIGTAIISLYFSTL 492
K D +S +WY K+ KP WNPP WLFPVMW+PLK+ Q W L + F SP ++ F ++ +LGDVWN FF ++ + G +I ++ L
Sbjct: 102 KPDETLSPEWYGKVVKPSWNPPAWLFPVMWIPLKLAQTVGAGIAWRALDHKVFRSPAIIAFVMHLTLGDVWNSQFFVKQRILTGLLVIYSFWGVL 196
BLAST of mRNA_H-elongata_contig75112.15188.1 vs. uniprot
Match: A0A5J4Z779_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z779_PORPP) HSP 1 Score: 97.8 bits (242), Expect = 1.400e-21 Identity = 45/126 (35.71%), Postives = 78/126 (61.90%), Query Frame = 1
Query: 103 ELSEVAKLSLWVGTVFLSGAATAGPRRWLETSQLFKVDRPISEQWYAKLRKPWWNPPNWLFPVMWVPLKILQVFACYEMWDKLKDRSFLSPPLV--VFALYKSLGDVWNKVFFERRSLNIGTAIIS 474
+L + LW+ F S P W++ Q+++ RP+ +WY+KL+KP W+PPN+ FP++WVP+++L+ +W+ L+ R+ LSPPL+ +FA+ S D+WN+VFF + + G ++S
Sbjct: 78 QLFSMWSFVLWMTVAFGSSFILHLPSMWMKRVQIYRPVRPLDPEWYSKLKKPIWHPPNFCFPLLWVPVRVLRSIGSSLLWEALR-RNPLSPPLMLPIFAMVWS--DIWNQVFFVQHDMVGGIGVMS 200
BLAST of mRNA_H-elongata_contig75112.15188.1 vs. uniprot
Match: R1FSF7_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FSF7_EMIHU) HSP 1 Score: 96.3 bits (238), Expect = 2.270e-21 Identity = 55/155 (35.48%), Postives = 84/155 (54.19%), Query Frame = 1
Query: 31 ALETGCILAFVGAMSYLSDSYANPELSEVAKLSLWVGTVFLSGAATAGPRRWLETSQLFKVDRPISEQWYAKLRKPWWNPPNWLFPVMWVPLKILQVFACYEMWDKLKDRSFLSPPLVVFALYKSLGDVWNKVFFERRSLNIGTAIISLYFSTLL 495
A+ET +LAF+ A + + S A+ E S+ W+G + R + + +S +WY KL KP WNPP WLFPVMW+P+K+ Q A W L R+F + P+V+F L+ SLGD+WN FF ++ G +I +++ L+
Sbjct: 55 AMETILLLAFLRAAAEVV-SRASGERSK-----FWIGQLAWVVVVQGSSRL---QGYMQSNTQTLSPEWYDKLVKPNWNPPAWLFPVMWIPIKLAQTAAAGITWRALGHRTFSAAPVVMFLLHLSLGDIWNVQFFLKQRKLTGLLVIYTFWAALI 200
BLAST of mRNA_H-elongata_contig75112.15188.1 vs. uniprot
Match: A0A8J9RG94_9CHLO (Probable translocator protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RG94_9CHLO) HSP 1 Score: 90.5 bits (223), Expect = 1.060e-19 Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 235 WYAKLRKPWWNPPNWLFPVMWVPLKILQVFACYEMWDKL-KDRSFLSPPLVVFALYKSLGDVWNKVFFERRSL 450
WY KLRKP WNPPNW+FP +W+PLKILQ A + +W D+ ++ PL +F ++ LG+ WN VFF RR +
Sbjct: 51 WYPKLRKPSWNPPNWVFPAVWIPLKILQSAALWLVWKSAGSDKESVAVPLTIFGVHALLGNQWNVVFFGRRDM 123
BLAST of mRNA_H-elongata_contig75112.15188.1 vs. uniprot
Match: I0Z092_COCSC (TspO/MBR-related protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z092_COCSC) HSP 1 Score: 88.6 bits (218), Expect = 5.880e-19 Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 235 WYAKLRKPWWNPPNWLFPVMWVPLKILQVFACYEMWDKL-KDRSFLSPPLVVFALYKSLGDVWNKVFFERRSL 450
WY KL+KP WNPP+W+FP +W+PLKILQ A + +W D++ +S PL +F ++ LG+ WN VFF RR +
Sbjct: 51 WYPKLKKPSWNPPSWVFPAVWIPLKILQSAALWLVWKSAGADKASISIPLAIFGVHALLGNQWNVVFFGRRDM 123
BLAST of mRNA_H-elongata_contig75112.15188.1 vs. uniprot
Match: A0A7S3UZZ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZZ5_HETAK) HSP 1 Score: 90.5 bits (223), Expect = 1.190e-18 Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 235 WYAKLRKPWWNPPNWLFPVMWVPLKILQVFACYEMWDKLKDRSFLSPPLVVFALYKSLGDVWNKVFFERRSLNIG-TAIISLYFS 486
WY L KP WNPP+WLFPVMW+PLK LQV +W + R + P ++ F Y++LGD+WN +FF++R + G AI +LY S
Sbjct: 181 WYRGLAKPAWNPPDWLFPVMWIPLKTLQVAGAALVWRAV-GRRWAHPAVLAFLGYQALGDLWNALFFDQRRIGFGLVAIYALYAS 264
BLAST of mRNA_H-elongata_contig75112.15188.1 vs. uniprot
Match: A0A7S3PBU0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBU0_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 4.070e-18 Identity = 51/134 (38.06%), Postives = 74/134 (55.22%), Query Frame = 1
Query: 100 PELSEVAKLSLWVGTVFLSGAATAGPRRWLETSQLFKVDR-PISEQWYAKLRKPWWNPPNWLFPVMWVPL-KILQVFACYEMWDKLKDRSFLSPPLVVFALYKSLGDVWNKVFFERRSLNIGTAIISLYFSTLL 495
PEL V+ L++ +G+ A G + T QL + + P WY+ L+KPWWNPP WLFP+MW+ + K Q + + K+ D F PL F + +LGD WNKVFF + G A+IS+++ LL
Sbjct: 116 PEL--VSALAVTLGSSLFGSLAEGGLS--VATRQLLEPNMTPGDPIWYSNLKKPWWNPPGWLFPIMWLLIVKPTQAWGIARVL-KVSDEKFPWLPLGAFTGHLALGDAWNKVFFGMQCTGRGAALISVFYGALL 244
BLAST of mRNA_H-elongata_contig75112.15188.1 vs. uniprot
Match: A0A5J4Y7V0_9CHLO (TspO and MBR related protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y7V0_9CHLO) HSP 1 Score: 85.5 bits (210), Expect = 8.250e-18 Identity = 40/99 (40.40%), Postives = 53/99 (53.54%), Query Frame = 1
Query: 154 SGAATAGPRRWLETSQLFKVDRPISEQWYAKLRKPWWNPPNWLFPVMWVPLKILQVFACYEMWDKLKDRSFLSPPLVVFALYKSLGDVWNKVFFERRSL 450
+GA G +R + T + WY LRKP W PPNW+FP MW+PLKI Q A + +W D+ L+ PL VF +LG+ WN VF R +
Sbjct: 30 AGAVVFGVQRLVPT---------MDPNWYRNLRKPEWTPPNWVFPAMWIPLKIAQSVAVWLVWKSRADKQELALPLTVFGASLALGNWWNVVFMGRHQM 119 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75112.15188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig75112.15188.1 >prot_H-elongata_contig75112.15188.1 ID=prot_H-elongata_contig75112.15188.1|Name=mRNA_H-elongata_contig75112.15188.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp VIFAEALAETALETGCILAFVGAMSYLSDSYANPELSEVAKLSLWVGTVFback to top mRNA from alignment at H-elongata_contig75112:746..2932- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig75112.15188.1 ID=mRNA_H-elongata_contig75112.15188.1|Name=mRNA_H-elongata_contig75112.15188.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2187bp|location=Sequence derived from alignment at H-elongata_contig75112:746..2932- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig75112:746..2932- >mRNA_H-elongata_contig75112.15188.1 ID=mRNA_H-elongata_contig75112.15188.1|Name=mRNA_H-elongata_contig75112.15188.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig75112:746..2932- (Himanthalia elongata Himel1 dioecious)back to top |