prot_H-elongata_contig75022.15186.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig75022.15186.1
Unique Nameprot_H-elongata_contig75022.15186.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length259
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75022.15186.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006564Zinc finger, PMZ-typeSMARTSM0057526again6coord: 189..216
e-value: 0.002
score: 25.0
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 190..212
e-value: 9.6E-5
score: 22.0
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 170..214
score: 9.99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75022contigH-elongata_contig75022:23..2883 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75022.15186.1mRNA_H-elongata_contig75022.15186.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig75022 23..2884 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig75022.15186.1 ID=prot_H-elongata_contig75022.15186.1|Name=mRNA_H-elongata_contig75022.15186.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp
VQTYRCLQHYLKNAPAIGADLVNNAYNAARAPSEAQFHSFMGRVQREKPA
TYNHLMNVLPLSLWTHHACKQGTRIGDTVTSNNVESLINMVGAEVRDKMP
LLMVESIVDQIASKCAAYAKTGSTSGELYTPHAVKTFDTERTLSNGLVAT
DYGGDTFKVESFGGVHPGSNTVDLKLGTPGTSEEGNHTMKCTCSFPARHG
IPCRHVLAAAKHLSKMDVARQLIDKGYKAEKYRAAYGNSSFRIRPPSLPT
LVIDPTLFP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006564Znf_PMZ
IPR007527Znf_SWIM