mRNA_H-elongata_contig75013.15184.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75013.15184.1
Unique NamemRNA_H-elongata_contig75013.15184.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75013.15184.1 vs. uniprot
Match: D8LPV7_ECTSI (PX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPV7_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.120e-23
Identity = 71/127 (55.91%), Postives = 80/127 (62.99%), Query Frame = 3 
Query:  411 SRPSFGASFLEFRVVTRRXXXXXXRRQHTWTRGSIRGDKIDGSGMGXXXXXXXXXXXXXGDDRSYAVVWRRFTAFRSLHFDIVNMLRGSHLLESLPPLPAKCINPLVNQMGEAFVERRKMVLQTYLR 791
            ++  FG  FLEFRVVT               RG+ R D        XXXXXXXX          +AVVWRRF+AFRSLH D+  ML GSHLL+SLPPLPAKCINPLVNQMG AF+E R+ VLQ YLR
Sbjct:  139 AKDRFGTEFLEFRVVT--------------LRGTRRRDSCGXXXXXXXXXXXXXGCY-------HAVVWRRFSAFRSLHSDVTAMLWGSHLLDSLPPLPAKCINPLVNQMGAAFLESRREVLQAYLR 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75013.15184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPV7_ECTSI1.120e-2355.91PX domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75013contigH-elongata_contig75013:437..1732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog2880.D8LPV7
EggNOG free text desc.PX domain
EggNOG OGs2D5A9@1,2SXWF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-02_004250.1
Exons2
Model size794
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75013.15184.1prot_H-elongata_contig75013.15184.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75013 437..1190 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.7309053-CDS-H-elongata_contig75013:436..5221622931155.7309053-CDS-H-elongata_contig75013:436..522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75013 437..522 -
1691679721.2052543-CDS-H-elongata_contig75013:436..5221691679721.2052543-CDS-H-elongata_contig75013:436..522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75013 437..522 -
1622931155.7516835-CDS-H-elongata_contig75013:1024..11901622931155.7516835-CDS-H-elongata_contig75013:1024..1190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75013 1025..1190 -
1691679721.220238-CDS-H-elongata_contig75013:1024..11901691679721.220238-CDS-H-elongata_contig75013:1024..1190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75013 1025..1190 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.7663324-UTR-H-elongata_contig75013:1190..17321622931155.7663324-UTR-H-elongata_contig75013:1190..1732Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75013 1191..1732 -
1691679721.2275581-UTR-H-elongata_contig75013:1190..17321691679721.2275581-UTR-H-elongata_contig75013:1190..1732Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75013 1191..1732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75013.15184.1

>prot_H-elongata_contig75013.15184.1 ID=prot_H-elongata_contig75013.15184.1|Name=mRNA_H-elongata_contig75013.15184.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MGGGFGGGVGVGAGAGDDRSYAVVWRRFTAFRSLHFDIVNMLRGSHLLES
LPPLPAKCINPLVNQMGEAFVERRKMVLQTYLR*
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mRNA from alignment at H-elongata_contig75013:437..1732-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75013.15184.1 ID=mRNA_H-elongata_contig75013.15184.1|Name=mRNA_H-elongata_contig75013.15184.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1296bp|location=Sequence derived from alignment at H-elongata_contig75013:437..1732- (Himanthalia elongata Himel1 dioecious)
AAAGATCGGACGCCCCTCCTTATGCAGCCTGTCCATTTGTGATCGTTCCC
ACCCCGTCCCCTCTTTCTCGCGTCTTCGACCAGGGGGAGTTAGTAATCAT
TGGACAGGCATTCGTATCATCATCCCTGTCCACATTGGTCTCCTCGTCCT
TAGAGCCTTCCAGTCGTTTCGATGTTCTCACTGCCCGCTTCCTGCATTAG
GCGTTGCTGCGCGAAAGGGACGCCGTAGTCCCAGGATCGACCTCGCTTTC
CGATGATGACGTCATGATGCGCAGTAAGACTCGATGGTGTACGGTTTGGA
GCTTGTTGTAGTTGCTCTTGGTGTAGGGTCATCGGTATTGTTTCGGGAAG
CCCACCCCCTTCCCGCTTCTTTCTGTGGGGGGCTGTCTCGCGGTCGTTTG
GGGTGTCGCCTCTCGCCCCAGCTTCGGCGCCTCGTTTTTGGAGTTTCGGG
TCGTGACACGGAGAGGAGGCGGCGGTGGTGGAAGAAGGCAGCATACGTGG
ACTAGGGGATCGATTCGGGGCGACAAGATCGACGGTTCCGGCATGGGCGG
CGGCTTCGGCGGTGGCGTTGGTGTTGGTGCTGGTGCTGGAGACGATCGGT
CCTACGCCGTGGTGTGGAGACGCTTCACGGCGTTCCGCTCGCTCCACTTC
GACATCGTTAACATGTTGAGGGGGTCTCATCTCTTGGAAAGTCTTCCCCC
GTTGCCAGGTGAGGTTCTCCCCCTCTCCCCCCCCCTGCCAATTTTGCTTA
CCAGTGGTCATAAAATCAAGTCGGGTTTCCATTAAACTTTGCTTCGCGTT
TGGTCAGAGGGTATGGTGCCTGCGATAGATGTGGTGATGGCGATCCTACC
TCAACGGCAAAGAGACATCGGCATTGTGGCGTCGACCGGCTATAACCCTC
AACTTTGATCTACGCTACGGAATGCTCTAAGGAAAAACTGACAGCAGGAC
TGTCCCCATCCCATGCGTGACGATTCTCGTCGAAACGCCCTCGCGGGGTT
GAGGCGGGGGGGGGGTGGGGCTGCTGGGTGGCTGGATGCGTTAAAAGGTG
ACTGCCGACCGGGTCATCCGGTGGTCCGCACCGACGACCGGCTCGAGCTA
CGAGTAATAAGTAGTTGTTTTAGACCCGTCCTCCGATGGAAAAAAATATG
TTTGTTTTTGCGTTTCTGCGTTTTGCGTTTGTTTGTTTTTCTCCCCGCGT
GAACATGCAGCGAAGTGCATCAACCCTCTCGTAAACCAGATGGGAGAAGC
TTTCGTCGAAAGGCGCAAGATGGTGCTGCAGACATATCTCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig75013:437..1732-

>mRNA_H-elongata_contig75013.15184.1 ID=mRNA_H-elongata_contig75013.15184.1|Name=mRNA_H-elongata_contig75013.15184.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig75013:437..1732- (Himanthalia elongata Himel1 dioecious)
ATGGGCGGCGGCTTCGGCGGTGGCGTTGGTGTTGGTGCTGGTGCTGGAGA
CGATCGGTCCTACGCCGTGGTGTGGAGACGCTTCACGGCGTTCCGCTCGC
TCCACTTCGACATCGTTAACATGTTGAGGGGGTCTCATCTCTTGGAAAGT
CTTCCCCCGTTGCCAGATGGGCGGCGGCTTCGGCGGTGGCGTTGGTGTTG
GTGCTGGTGCTGGAGACGATCGGTCCTACGCCGTGGTGTGGAGACGCTTC
ACGGCGTTCCGCTCGCTCCACTTCGACATCGTTAACATGTTGAGGGGGTC
TCATCTCTTGGAAAGTCTTCCCCCGTTGCCAGCGAAGTGCATCAACCCTC
TCGTAAACCAGATGGGAGAAGCTTTCGTCGAAAGGCGCAAGATGGTGCTG
CAGACATATCTCAGGTGACGAAGTGCATCAACCCTCTCGTAAACCAGATG
GGAGAAGCTTTCGTCGAAAGGCGCAAGATGGTGCTGCAGACATATCTCAG
GTGA
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