mRNA_H-elongata_contig750.15180.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig750.15180.1
Unique NamemRNA_H-elongata_contig750.15180.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig750.15180.1 vs. uniprot
Match: D7FYS4_ECTSI (40S ribosomal protein S14 n=3 Tax=Sar TaxID=2698737 RepID=D7FYS4_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 1.260e-95
Identity = 145/148 (97.97%), Postives = 145/148 (97.97%), Query Frame = 1 
Query:    1 KKNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            KK  E KVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL
Sbjct:    4 KKTKEDKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 151
[Close]
BLAST of mRNA_H-elongata_contig750.15180.1 vs. uniprot
Match: M1XK24_9METZ (40S ribosomal protein S14 n=1 Tax=Sycon ciliatum TaxID=27933 RepID=M1XK24_9METZ)

HSP 1 Score: 258 bits (659), Expect = 1.960e-86
Identity = 130/148 (87.84%), Postives = 139/148 (93.92%), Query Frame = 1 
Query:    1 KKNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            +K  EAK EE + LGP+V EGENVFGVAHIFASFNDTFVHITDLSG+ET+ RVTGGMKVKADRDEASPYAAMLAAQDVA RCKE+GITALHIK+RATGGN+TKTPGPGAQSALRALARAGMKIGRIEDVTPIP+D TRRKGGRRGRRL
Sbjct:    7 RKGKEAKKEENIVLGPQVGEGENVFGVAHIFASFNDTFVHITDLSGKETITRVTGGMKVKADRDEASPYAAMLAAQDVAVRCKEVGITALHIKLRATGGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 154
[Close]
BLAST of mRNA_H-elongata_contig750.15180.1 vs. uniprot
Match: A0A7S2HU48_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HU48_9STRA)

HSP 1 Score: 258 bits (660), Expect = 2.290e-86
Identity = 129/147 (87.76%), Postives = 140/147 (95.24%), Query Frame = 1 
Query:    4 KNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            K+ E  VEE  T+G KVA+GEN+FGVAHIFASFNDTFVH+TDLSGRET+VRVTGGMKVKADRDEASPYAAMLAAQDVAA+CK++GITALHIKMRATGGNKTKTPGPGAQSALRALARAG+KIGRIEDVTPIP+DCTRRK GRRGRRL
Sbjct:   23 KDAEQPVEEMTTIGAKVADGENLFGVAHIFASFNDTFVHVTDLSGRETIVRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKDIGITALHIKMRATGGNKTKTPGPGAQSALRALARAGLKIGRIEDVTPIPSDCTRRKSGRRGRRL 169
[Close]
BLAST of mRNA_H-elongata_contig750.15180.1 vs. uniprot
Match: A0A1D1Z556_9ARAE (40S ribosomal protein S14-3 n=2 Tax=Viridiplantae TaxID=33090 RepID=A0A1D1Z556_9ARAE)

HSP 1 Score: 256 bits (655), Expect = 6.970e-86
Identity = 129/143 (90.21%), Postives = 138/143 (96.50%), Query Frame = 1 
Query:   16 AKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            AKVEE ++LGP+V +GE VFGVAHIFASFNDTFVH+TDLSGRET+VRVTGGMKVKADRDE+SPYAAMLAAQDVAA+CKELGITALHIK+RATGGN TKTPGPGAQSALRALARAGMKIGRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:    8 AKVEENISLGPQVRDGEEVFGVAHIFASFNDTFVHVTDLSGRETIVRVTGGMKVKADRDESSPYAAMLAAQDVAAKCKELGITALHIKLRATGGNGTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
[Close]
BLAST of mRNA_H-elongata_contig750.15180.1 vs. uniprot
Match: K3YAJ9_SETIT (Uncharacterized protein n=7 Tax=Magnoliopsida TaxID=3398 RepID=K3YAJ9_SETIT)

HSP 1 Score: 256 bits (655), Expect = 7.200e-86
Identity = 130/148 (87.84%), Postives = 137/148 (92.57%), Query Frame = 1 
Query:    1 KKNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            +K T    EE VTLGP V EGE VFGVAHIFASFNDTF+HITDLSGRETMVR+TGGMKVKADRDE+SPYAAMLAAQDVA RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMKIGRIEDVTP+PTD TRRKGGRRGRRL
Sbjct:    4 RKKTREPKEENVTLGPAVREGEYVFGVAHIFASFNDTFIHITDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 151
[Close]
BLAST of mRNA_H-elongata_contig750.15180.1 vs. uniprot
Match: A0A1U8B504_NELNU (40S ribosomal protein S14-like n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1U8B504_NELNU)

HSP 1 Score: 256 bits (654), Expect = 9.890e-86
Identity = 127/140 (90.71%), Postives = 135/140 (96.43%), Query Frame = 1 
Query:   25 EERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            EE VTLGP V EGENVFGVAHIFASFNDTF+H+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLAAQDVA RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMK+GRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:   11 EENVTLGPTVREGENVFGVAHIFASFNDTFIHVTDLSGRETIVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKVGRIEDVTPIPTDSTRRKGGRRGRRL 150
[Close]
BLAST of mRNA_H-elongata_contig750.15180.1 vs. uniprot
Match: A0A835RMY5_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RMY5_VANPL)

HSP 1 Score: 257 bits (656), Expect = 1.960e-85
Identity = 128/140 (91.43%), Postives = 136/140 (97.14%), Query Frame = 1 
Query:   25 EERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            EE VTLGPKV EGE+VFGVAHIFASFNDTF+H+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLAAQDVA RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMKIGRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:   52 EETVTLGPKVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 191
[Close]
BLAST of mRNA_H-elongata_contig750.15180.1 vs. uniprot
Match: A9P8E9_POPTR (Uncharacterized protein n=8 Tax=fabids TaxID=91835 RepID=A9P8E9_POPTR)

HSP 1 Score: 255 bits (652), Expect = 2.000e-85
Identity = 128/148 (86.49%), Postives = 138/148 (93.24%), Query Frame = 1 
Query:    1 KKNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            K+ T    EE VTLGP V EGE+VFGVAHIFASFNDTF+H+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLAAQDV+ RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMKIGRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:    3 KRRTREPKEENVTLGPTVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
[Close]
BLAST of mRNA_H-elongata_contig750.15180.1 vs. uniprot
Match: A0A0K9PCU6_ZOSMR (30S ribosomal protein S11 n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A0K9PCU6_ZOSMR)

HSP 1 Score: 255 bits (652), Expect = 2.000e-85
Identity = 129/148 (87.16%), Postives = 140/148 (94.59%), Query Frame = 1 
Query:    1 KKNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            +KN E K EE VTLGP V +GE+VFGVAHIFASFNDTF+H+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLAAQDV+ RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMKIGRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:    4 RKNREPK-EENVTLGPSVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSVRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
[Close]
BLAST of mRNA_H-elongata_contig750.15180.1 vs. uniprot
Match: M7Z6I6_TRIUA (40S ribosomal protein S14 n=4 Tax=Triticum TaxID=4564 RepID=M7Z6I6_TRIUA)

HSP 1 Score: 255 bits (652), Expect = 2.060e-85
Identity = 127/148 (85.81%), Postives = 138/148 (93.24%), Query Frame = 1 
Query:    1 KKNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            K+ T    EE VTLGP V EGE+VFGVAHIFASFNDTF+H+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLA+QDVA RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMKIGRIEDVTP+PTD TRRKGGRRGRRL
Sbjct:    4 KRKTREPKEENVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig750.15180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYS4_ECTSI1.260e-9597.9740S ribosomal protein S14 n=3 Tax=Sar TaxID=269873... [more]
M1XK24_9METZ1.960e-8687.8440S ribosomal protein S14 n=1 Tax=Sycon ciliatum T... [more]
A0A7S2HU48_9STRA2.290e-8687.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1D1Z556_9ARAE6.970e-8690.2140S ribosomal protein S14-3 n=2 Tax=Viridiplantae ... [more]
K3YAJ9_SETIT7.200e-8687.84Uncharacterized protein n=7 Tax=Magnoliopsida TaxI... [more]
A0A1U8B504_NELNU9.890e-8690.7140S ribosomal protein S14-like n=10 Tax=Mesangiosp... [more]
A0A835RMY5_VANPL1.960e-8591.43Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A9P8E9_POPTR2.000e-8586.49Uncharacterized protein n=8 Tax=fabids TaxID=91835... [more]
A0A0K9PCU6_ZOSMR2.000e-8587.1630S ribosomal protein S11 n=5 Tax=Mesangiospermae ... [more]
M7Z6I6_TRIUA2.060e-8585.8140S ribosomal protein S14 n=4 Tax=Triticum TaxID=4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig750contigH-elongata_contig750:1192..2785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.0
Seed ortholog evalue1.7e-73
Seed eggNOG ortholog2880.D7FYS4
Preferred nameRPS14
KEGG rclassRC00002,RC02753
KEGG koko:K01000,ko:K02955
KEGG TC9.B.146
KEGG ReactionR05629,R05630
KEGG Pathwayko00550,ko01100,ko01502,ko03010,map00550,map01100,map01502,map03010
KEGG ModuleM00177
GOsGO:0000028,GO:0000122,GO:0000184,GO:0000462,GO:0000956,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030490,GO:0030684,GO:0030686,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032040,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034248,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0042592,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045182,GO:0045184,GO:0045892,GO:0045934,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051252,GO:0051253,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070181,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.mRNA 5'-UTR binding
EggNOG OGsCOG0100@1,KOG0407@2759
EC2.7.8.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01011,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S11
Ec32 orthologEc-19_002330.1
Exons4
Model size447
Cds size447
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig750.15180.1prot_H-elongata_contig750.15180.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig750 1192..2785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.0599256-CDS-H-elongata_contig750:1191..12721622931155.0599256-CDS-H-elongata_contig750:1191..1272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig750 1192..1272 -
1691679720.9088635-CDS-H-elongata_contig750:1191..12721691679720.9088635-CDS-H-elongata_contig750:1191..1272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig750 1192..1272 -
1622931155.079548-CDS-H-elongata_contig750:1783..19001622931155.079548-CDS-H-elongata_contig750:1783..1900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig750 1784..1900 -
1691679720.9221425-CDS-H-elongata_contig750:1783..19001691679720.9221425-CDS-H-elongata_contig750:1783..1900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig750 1784..1900 -
1622931155.0975122-CDS-H-elongata_contig750:2256..23881622931155.0975122-CDS-H-elongata_contig750:2256..2388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig750 2257..2388 -
1691679720.930111-CDS-H-elongata_contig750:2256..23881691679720.930111-CDS-H-elongata_contig750:2256..2388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig750 2257..2388 -
1622931155.1158643-CDS-H-elongata_contig750:2668..27851622931155.1158643-CDS-H-elongata_contig750:2668..2785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig750 2669..2785 -
1691679720.9383314-CDS-H-elongata_contig750:2668..27851691679720.9383314-CDS-H-elongata_contig750:2668..2785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig750 2669..2785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig750.15180.1

>prot_H-elongata_contig750.15180.1 ID=prot_H-elongata_contig750.15180.1|Name=mRNA_H-elongata_contig750.15180.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
KKNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETM
VRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGN
KTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL*
back to top

mRNA from alignment at H-elongata_contig750:1192..2785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig750.15180.1 ID=mRNA_H-elongata_contig750.15180.1|Name=mRNA_H-elongata_contig750.15180.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1594bp|location=Sequence derived from alignment at H-elongata_contig750:1192..2785- (Himanthalia elongata Himel1 dioecious)
AAGAAGAACACCGAGGCGAAGGTGGAGGAGAGGGTCACCCTCGGACCCAA
GGTGGCGGAGGGAGAGAATGTGTTCGGCGTCGCGCACATCTTCGCGTCCT
TCAACGACACCTTCGTGGTGAGTCAGCCAACTCTTCCTACGCCCAGCGTC
GGGAATGTTGCTTGTGTTAGAGCCTTACGACGTTCATTTCTCTCGAGTCT
GCATCGACGAACGATATGGGGATACTGACCGGTTTATGTTGAACATTCAC
TTTCACGATTAAAAAATTGAGCATTTGCTCGGCACCGGCAAACATTTCTT
GGAACACGTCTAACCAGGGTAGCTTGAAACAACGTCGCATCATCGCTAGT
TTCCAATTTGTATCCATCTGCTTCATGTACTCCCGGTGGCGTCGTAGCAC
ATCACGGATCTGTCGGGGAGAGAAACTATGGTCCGAGTAACTGGCGGAAT
GAAGGTGAAAGCTGACCGCGACGAAGCATCGCCCTACGCTGCCATGCTCG
CGGCTCAGGACGTGGCTGCCCGCTGCAAGGTGAGGCAAAGCCGGCAAGGT
TCGTAAGATGAAAGAAAACAAGTGGCTGCTTGGTACAGTCGTCCCTTACG
CCACCGATATTTTTGACGCTGCTGTTGGCTAAATTTTTTCTGTTTTACGG
TTTTCCAACGGTTTTTGTCTTTTGAATAAATGCTTTGGTGGCTTCGTTTT
ACAAGACTTCGAAGAGCAGTAGTTGAGGACAACCACCTTCGTCATCAACC
ACTTGGCGATCGCAGCGATGGGCAGTCGAGAGGCCATTTGCCCCACGGTG
ATGACCGAGGCATACAAGCAACCCCCGTAACGAAAGCCGTGCGCGAGCCA
TGACGTCACTTTTCTCGTGCGCTTGCCGGTTGCAGGAGCTGGGAATCACC
GCCCTGCACATCAAGATGCGCGCTACCGGTGGTAACAAGACCAAGACTCC
TGGCCCCGGCGCGCAGTCCGCCCTCCGCGCTCTTGCTCGTGCTGGCATGA
AGGTAATTTTGCCTTGCGGTGATGACGTAGCAGCAGTACCCGCGGCCGAC
TAATTTCTTATTTGGCGATGTCGTAGATGTAGCAGTAGTCCAGGCGACCG
ACTAGCGTCATCGACGTCCCCCTTCGCGCAAGCACCCGCACCTGCGTCTT
CAATGGCAAGGGTCGGTAAAGGTTCGAACCTGACGATAGTTGGTCCCCTG
GACTAAGAAGTATATAGGATATAGTGTGGATGTTCGGGAGGTTTTAATAA
GTTCATATATATTAAATATAAATGTAAAAGCCTTGGTTGACCACTATTCA
AGAGGGACCGACAAAATAAGGACTCAAGGCACCAGAAGAATTTTGGCAAC
TCGCACGTCTTTACTGGATAGTCGTGATCACGGCATTACGTCTTTCGATC
GATTCAATCAGACCGCTTTTTGCTACGAATGTATAGCACGCACATATGCT
TCACCAAAACTTGTCCCCCACCCCCTATCCCCTTCTTCACCGCCCCTCCC
GGATGTTGTCAAGATTGGCCGCATTGAAGATGTGACTCCGATTCCCACAG
ACTGTACGCGCCGGAAGGGTGGACGCCGTGGTCGGCGTCTCTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig750:1192..2785-

>mRNA_H-elongata_contig750.15180.1 ID=mRNA_H-elongata_contig750.15180.1|Name=mRNA_H-elongata_contig750.15180.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig750:1192..2785- (Himanthalia elongata Himel1 dioecious)
AAGAAGAACACCGAGGCGAAGGTGGAGGAGAGGGTCACCCTCGGACCCAA
GGTGGCGGAGGGAGAGAATGTGTTCGGCGTCGCGCACATCTTCGCGTCCT
TCAACGACACCTTCGTGAAGAAGAACACCGAGGCGAAGGTGGAGGAGAGG
GTCACCCTCGGACCCAAGGTGGCGGAGGGAGAGAATGTGTTCGGCGTCGC
GCACATCTTCGCGTCCTTCAACGACACCTTCGTGCACATCACGGATCTGT
CGGGGAGAGAAACTATGGTCCGAGTAACTGGCGGAATGAAGGTGAAAGCT
GACCGCGACGAAGCATCGCCCTACGCTGCCATGCTCGCGGCTCAGGACGT
GGCTGCCCGCTGCAAGCACATCACGGATCTGTCGGGGAGAGAAACTATGG
TCCGAGTAACTGGCGGAATGAAGGTGAAAGCTGACCGCGACGAAGCATCG
CCCTACGCTGCCATGCTCGCGGCTCAGGACGTGGCTGCCCGCTGCAAGGA
GCTGGGAATCACCGCCCTGCACATCAAGATGCGCGCTACCGGTGGTAACA
AGACCAAGACTCCTGGCCCCGGCGCGCAGTCCGCCCTCCGCGCTCTTGCT
CGTGCTGGCATGAAGGAGCTGGGAATCACCGCCCTGCACATCAAGATGCG
CGCTACCGGTGGTAACAAGACCAAGACTCCTGGCCCCGGCGCGCAGTCCG
CCCTCCGCGCTCTTGCTCGTGCTGGCATGAAGATTGGCCGCATTGAAGAT
GTGACTCCGATTCCCACAGACTGTACGCGCCGGAAGGGTGGACGCCGTGG
TCGGCGTCTCTGAATTGGCCGCATTGAAGATGTGACTCCGATTCCCACAG
ACTGTACGCGCCGGAAGGGTGGACGCCGTGGTCGGCGTCTCTGA
back to top