mRNA_H-elongata_contig74989.15178.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74989.15178.1
Unique NamemRNA_H-elongata_contig74989.15178.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74989.15178.1 vs. uniprot
Match: D8LGR2_ECTSI (Ribosomal protein L25, Ctc-form n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGR2_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 3.190e-30
Identity = 54/80 (67.50%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    1 RLKTHQHIHLPDNPEKVPRWLYLDLEFVQSGSKLRVSDIIIPDGIRFFRGNESDMWNEIVCTIKGRKMLSY--SGGTDEE 234
            RLKTHQHI LP++PE VP+WLYLDLEFV+SGSKLRVSD+++P+GI   R NE  MWNE+VCTIKGRK+ +   S G DE+
Sbjct:  206 RLKTHQHILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGILLHRANEPGMWNEVVCTIKGRKVFASGDSAGDDED 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74989.15178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGR2_ECTSI3.190e-3067.50Ribosomal protein L25, Ctc-form n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74989contigH-elongata_contig74989:68..1183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog description50S ribosomal protein L25
Ec32 orthologEc-07_005340.1
Exons3
Model size252
Cds size252
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74989.15178.1prot_H-elongata_contig74989.15178.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74989 68..1183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.7873797-CDS-H-elongata_contig74989:67..1661622931154.7873797-CDS-H-elongata_contig74989:67..166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74989 68..166 +
1691679720.8276393-CDS-H-elongata_contig74989:67..1661691679720.8276393-CDS-H-elongata_contig74989:67..166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74989 68..166 +
1622931154.8059227-CDS-H-elongata_contig74989:735..7981622931154.8059227-CDS-H-elongata_contig74989:735..798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74989 736..798 +
1691679720.8354046-CDS-H-elongata_contig74989:735..7981691679720.8354046-CDS-H-elongata_contig74989:735..798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74989 736..798 +
1622931154.822541-CDS-H-elongata_contig74989:1093..11831622931154.822541-CDS-H-elongata_contig74989:1093..1183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74989 1094..1183 +
1691679720.8431609-CDS-H-elongata_contig74989:1093..11831691679720.8431609-CDS-H-elongata_contig74989:1093..1183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74989 1094..1183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74989.15178.1

>prot_H-elongata_contig74989.15178.1 ID=prot_H-elongata_contig74989.15178.1|Name=mRNA_H-elongata_contig74989.15178.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
RLKTHQHIHLPDNPEKVPRWLYLDLEFVQSGSKLRVSDIIIPDGIRFFRG
NESDMWNEIVCTIKGRKMLSYSGGTDEENEDKE*
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mRNA from alignment at H-elongata_contig74989:68..1183+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74989.15178.1 ID=mRNA_H-elongata_contig74989.15178.1|Name=mRNA_H-elongata_contig74989.15178.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1116bp|location=Sequence derived from alignment at H-elongata_contig74989:68..1183+ (Himanthalia elongata Himel1 dioecious)
AGGTTAAAAACTCACCAACACATCCACCTGCCCGACAACCCCGAGAAGGT
GCCCAGGTGGCTGTACCTCGACTTGGAGTTCGTGCAGTCAGGAAGTAAGG
TCTGTAAAACGCGGCGTTCCAATCTCATCCATGCATCTCCAACGTATTGG
GTTTGTCGCGGAGGTTGCTTGAGAGTCCTTCATCGGCTCCTCCGGGGACC
GGGGAGAGGGGTTACCAATAATAAGTGGGTGCGGTTTCAGGAGGAGTTAC
TGGAGCGTTTAATCTTCTACCGTGGACGCATTGGTGTGTTTCGGAGGCGG
CTGTAGCACGCCGCAAGCCGACGAGTGTGTGGGCATGTTCTCGCTCTGAG
GCTCAGCCCATCCCTTCGTCTTCTGGGGGCGTCGTGCACCTTGCGCATCA
AAAAAACTGATTGCGACTCTCGATGATCAGTCGAAGCCTTTAGAGCCCCG
CCTGAATCAATCAACCCGCGGGGAGGAAAATAGGAGGCCCTGTCATAGAT
CTCCGCTAAGAAGTCGATGTCGACTGTCACGCGTTCGACGCCCCCTATTC
GTCGTCTTTCATTTATCCTCCCACCTTCCAATCCACTTTCCTATCCCACC
CTTGGCCTCTCTTTCTTTCTTTAACGCCGCCATCATCTGGTGCTGCCCGG
CGGGGCGCAACCCTACAGCTTCGAGTGAGCGACATCATCATCCCGGATGG
TATTCGCTTCTTCCGTGGAAATGAATCTGACGTGAGTCCGTGCGCGTGAA
ATGTGTCGTCAGTACCGTACCATTCTTCCGGCCCTAGATGATCGAGATTA
TCTTAGGGTGTGTTGGAACGTGTTGTCCAAGGGACGGAGTGAAGCTCGTG
ACCGCTCGAAAGTTCCCTCAGTAGAGATGGGAAGGCACGCAATTGCATTC
ACACACACCACCACCACGAAAAGCGGTCAGCGTAGGGTTAGTTGATTATC
GTTGCACAACTCAAACTTTGGCATTTCGTGCTCATTTGTCGGGCGGGGTT
GCGCCGGTTGCGCCGCTTGCGTGCAGATGTGGAACGAGATTGTGTGCACG
ATCAAGGGGAGGAAGATGCTTTCCTATTCGGGCGGTACTGACGAGGAAAA
CGAAGACAAGGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig74989:68..1183+

>mRNA_H-elongata_contig74989.15178.1 ID=mRNA_H-elongata_contig74989.15178.1|Name=mRNA_H-elongata_contig74989.15178.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig74989:68..1183+ (Himanthalia elongata Himel1 dioecious)
AGGTTAAAAACTCACCAACACATCCACCTGCCCGACAACCCCGAGAAGGT
GCCCAGGTGGCTGTACCTCGACTTGGAGTTCGTGCAGTCAGGAAGTAAGA
GGTTAAAAACTCACCAACACATCCACCTGCCCGACAACCCCGAGAAGGTG
CCCAGGTGGCTGTACCTCGACTTGGAGTTCGTGCAGTCAGGAAGTAAGCT
TCGAGTGAGCGACATCATCATCCCGGATGGTATTCGCTTCTTCCGTGGAA
ATGAATCTGACCTTCGAGTGAGCGACATCATCATCCCGGATGGTATTCGC
TTCTTCCGTGGAAATGAATCTGACATGTGGAACGAGATTGTGTGCACGAT
CAAGGGGAGGAAGATGCTTTCCTATTCGGGCGGTACTGACGAGGAAAACG
AAGACAAGGAGTGAATGTGGAACGAGATTGTGTGCACGATCAAGGGGAGG
AAGATGCTTTCCTATTCGGGCGGTACTGACGAGGAAAACGAAGACAAGGA
GTGA
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