mRNA_H-elongata_contig74976.15175.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74976.15175.1
Unique NamemRNA_H-elongata_contig74976.15175.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74976.15175.1 vs. uniprot
Match: A0A6H5KMW9_9PHAE (Vacuolar protein sorting-associated protein 35 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMW9_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 4.330e-80
Identity = 125/132 (94.70%), Postives = 130/132 (98.48%), Query Frame = 1
Query:   22 QVLDELRHLEDFFTTQNKQARQPMVGLYEQAQACTMVLPRLYLLNTVGACYIFSKEAPARDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDAGSPYEGEGGMVDDSVEFVLENFVEANKLWVRMHGQ 417
            +VLDELRHLEDFFT+QN+QARQPMVGLYEQAQACTMVLPRLYLLNTVGACYI S+EAPARDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDAGSPYEG+GG VDDSVEFVLENFVEANKLWVRMHGQ
Sbjct:   64 KVLDELRHLEDFFTSQNRQARQPMVGLYEQAQACTMVLPRLYLLNTVGACYILSQEAPARDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDAGSPYEGDGGSVDDSVEFVLENFVEANKLWVRMHGQ 195          
BLAST of mRNA_H-elongata_contig74976.15175.1 vs. uniprot
Match: F0YQH4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQH4_AURAN)

HSP 1 Score: 174 bits (440), Expect = 1.100e-52
Identity = 87/132 (65.91%), Postives = 101/132 (76.52%), Query Frame = 1
Query:   22 QVLDELRHLEDFFTTQNKQARQPMVGLYEQAQACTMVLPRLYLLNTVGACYIFSKEAPARDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDAGSPYEGEGGMVDDSVEFVLENFVEANKLWVRMHGQ 417
            +VLDEL HL+DFF+       Q    LYE+AQAC  VLPRLYLL TVGA YI S++APA+DIL DL+EM KGVQHPMRGLFLRNY +   +DKLPDAGS YEG GG V D+V+FVL+NF E N+LWVRM  Q
Sbjct:   66 KVLDELHHLDDFFSGLCASGTQAS-ELYEKAQACGDVLPRLYLLITVGAVYIKSRQAPAKDILNDLVEMAKGVQHPMRGLFLRNYLAQACKDKLPDAGSEYEGHGGDVSDAVDFVLQNFSETNRLWVRMQNQ 196          
BLAST of mRNA_H-elongata_contig74976.15175.1 vs. uniprot
Match: W7TDU3_9STRA (Vacuolar protein sorting-associated protein 35 n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDU3_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.210e-50
Identity = 91/133 (68.42%), Postives = 107/133 (80.45%), Query Frame = 1
Query:   22 QVLDELRHLEDFFTTQNKQARQPMVGLYEQAQACTMVLPRLYLLNTVGACYIFSKEAPARDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDAGSPYEGE-GGMVDDSVEFVLENFVEANKLWVRMHGQ 417
            +VLDELR++ED+FT   KQ + P+V LYE+ Q+C  VLPRLYLL TV   YI S EAPARDILKDL+EM+KGVQHPMRGLFLRNY S V+RDKLPD G+PYEGE GG V D+ EF+L+NF EAN+LW RM  Q
Sbjct:   64 KVLDELRYVEDYFTGLQKQGK-PVVELYEKVQSCGNVLPRLYLLITVAGVYIKSLEAPARDILKDLVEMSKGVQHPMRGLFLRNYLSQVSRDKLPDVGTPYEGEEGGSVQDAYEFILQNFSEANRLWCRMQQQ 195          
BLAST of mRNA_H-elongata_contig74976.15175.1 vs. uniprot
Match: A0A7S0EY21_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EY21_9EUKA)

HSP 1 Score: 169 bits (427), Expect = 5.140e-50
Identity = 83/129 (64.34%), Postives = 98/129 (75.97%), Query Frame = 1
Query:   31 DELRHLEDFFTTQNKQARQPMVGLYEQAQACTMVLPRLYLLNTVGACYIFSKEAPARDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDAGSPYEGEGGMVDDSVEFVLENFVEANKLWVRMHGQ 417
            DELRH+E FF  + K+ R+ M+ LYE  Q    VLPRLYLL +VG+ YI SKEAP++D+LKDL+EM +GVQHPMRGLFLRNY S  ++DKLPD GS YEG GG V DSV F+L NF E NKLWVRM  Q
Sbjct:   90 DELRHMEAFFEAEQKRGRR-MLELYELVQHAGNVLPRLYLLLSVGSVYIMSKEAPSKDVLKDLVEMCRGVQHPMRGLFLRNYLSQTSKDKLPDVGSEYEGAGGDVGDSVSFILSNFNEMNKLWVRMQHQ 217          
BLAST of mRNA_H-elongata_contig74976.15175.1 vs. uniprot
Match: A0A482RTR6_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTR6_9ARCH)

HSP 1 Score: 164 bits (415), Expect = 8.720e-49
Identity = 77/132 (58.33%), Postives = 101/132 (76.52%), Query Frame = 1
Query:   22 QVLDELRHLEDFFTTQNKQARQPMVGLYEQAQACTMVLPRLYLLNTVGACYIFSKEAPARDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDAGSPYEGEGGMVDDSVEFVLENFVEANKLWVRMHGQ 417
            ++ DELR LE++    ++  +  +V +YEQ Q+C  V+PRLYLL  VG  YI SKEAPA+DILKDL+EM KGVQHPMRGLFLRNY + V++++LPD GSPYEG GG + D+  F+L+NFVE N+LWVR+  Q
Sbjct:   64 KIQDELRELEEYLLALSRNGKS-VVEIYEQVQSCANVVPRLYLLCCVGGVYITSKEAPAKDILKDLIEMIKGVQHPMRGLFLRNYLTLVSKNRLPDTGSPYEGIGGNIHDACSFLLQNFVETNRLWVRLQTQ 194          
BLAST of mRNA_H-elongata_contig74976.15175.1 vs. uniprot
Match: A0A1Y1I153_KLENI (Vacuolar protein sorting-associated protein 35 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I153_KLENI)

HSP 1 Score: 174 bits (441), Expect = 4.520e-48
Identity = 85/132 (64.39%), Postives = 102/132 (77.27%), Query Frame = 1
Query:   22 QVLDELRHLEDFFTTQNKQARQPMVGLYEQAQACTMVLPRLYLLNTVGACYIFSKEAPARDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDAGSPYEGEGGMVDDSVEFVLENFVEANKLWVRMHGQ 417
            Q  DELRHLE FF  ++K+ R     LYE  Q    +LPRLYLL TVG+ YI SKEAPA+DILKDL+EM++GVQHP+RGLFLR+Y S +++DKLPD GS YEGEGG + D+VEFVL+NF E NKLWVRM  Q
Sbjct:   69 QTFDELRHLEAFFQEESKRGRSN-ADLYELVQHAGNILPRLYLLITVGSVYIRSKEAPAKDILKDLVEMSRGVQHPIRGLFLRSYLSQISKDKLPDTGSDYEGEGGTIHDAVEFVLQNFTEMNKLWVRMQHQ 199          
BLAST of mRNA_H-elongata_contig74976.15175.1 vs. uniprot
Match: A0A7S4B0S6_CHRCT (Vacuolar protein sorting-associated protein 35 n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B0S6_CHRCT)

HSP 1 Score: 171 bits (432), Expect = 7.310e-47
Identity = 86/131 (65.65%), Postives = 100/131 (76.34%), Query Frame = 1
Query:   25 VLDELRHLEDFFTTQNKQARQPMVGLYEQAQACTMVLPRLYLLNTVGACYIFSKEAPARDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDAGSPYEGEGGMVDDSVEFVLENFVEANKLWVRMHGQ 417
            V  ELRHLED+F+ ++K  R+ M  +YE  Q    VLPRLYLL TVG+ YI SKEAPA+D+LKDL+EM +GVQHPMRGLFLRNY S  ++DKLPDAGS YEG GG V D+V FVL NF E NKLWVRM  Q
Sbjct:   68 VTGELRHLEDYFSAEHKTGRR-MQEMYELVQHSGNVLPRLYLLLTVGSVYIKSKEAPAKDVLKDLVEMCRGVQHPMRGLFLRNYLSQASKDKLPDAGSEYEGSGGAVADAVSFVLTNFGEMNKLWVRMQHQ 197          
BLAST of mRNA_H-elongata_contig74976.15175.1 vs. uniprot
Match: A0A2K1L3R3_PHYPA (Vacuolar protein sorting-associated protein 35 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L3R3_PHYPA)

HSP 1 Score: 170 bits (431), Expect = 1.260e-46
Identity = 83/128 (64.84%), Postives = 99/128 (77.34%), Query Frame = 1
Query:   34 ELRHLEDFFTTQNKQARQPMVGLYEQAQACTMVLPRLYLLNTVGACYIFSKEAPARDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDAGSPYEGEGGMVDDSVEFVLENFVEANKLWVRMHGQ 417
            EL+ LE FF  + K+ R P   LYE  Q    +LPRLYLL TVG+ YI S EAPA+D+LKDL+EM +GVQHP+RGLFLRNY + ++RDKLPDAGSP+EGEGG V D+VEFVL+NF E NKLWVRM  Q
Sbjct:   89 ELQRLEIFFQDETKRGRTP-ADLYELVQHAGNILPRLYLLCTVGSVYIMSNEAPAKDVLKDLVEMIRGVQHPIRGLFLRNYLTQISRDKLPDAGSPFEGEGGKVIDAVEFVLQNFTEMNKLWVRMQHQ 215          
BLAST of mRNA_H-elongata_contig74976.15175.1 vs. uniprot
Match: A0A7S3H9X6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9X6_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.320e-46
Identity = 79/129 (61.24%), Postives = 101/129 (78.29%), Query Frame = 1
Query:   22 QVLDELRHLEDFFTTQNKQARQPMVGLYEQAQACTMVLPRLYLLNTVGACYIFSKEAPARDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDAGSPYEGEGGMVDDSVEFVLENFVEANKLWVRM 408
            ++LDELR LE++ ++  +  R  MV +YEQ Q CT V+PRLYLL  VG  YI SKEAPA+DILKDL+E+ KGVQHPMRGLFLRNY + V++ KLPD GSPYEG GG + D+  F+L+NF+E N+LWVR+
Sbjct:   66 RILDELRELEEYLSSLQRSGRS-MVEIYEQVQCCTNVVPRLYLLCCVGGVYITSKEAPAKDILKDLIEVIKGVQHPMRGLFLRNYLTLVSKGKLPDVGSPYEGVGGSIQDAYSFLLQNFIETNRLWVRL 193          
BLAST of mRNA_H-elongata_contig74976.15175.1 vs. uniprot
Match: A0A7S2XXV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXV8_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.320e-46
Identity = 87/138 (63.04%), Postives = 99/138 (71.74%), Query Frame = 1
Query:   22 QVLDELRHLEDFFTTQNKQARQPMVGLYEQAQACTMVLPRLYLLNTVGACYIFSKEAPARDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDKLPDAGSPYEGE------GGMVDDSVEFVLENFVEANKLWVRMHGQ 417
            +V DELR+LED+F    +Q R PM  LYEQ Q C  VLPRLYLL TVG CYI SKEAPA+ +L DLLEMTKGVQHPM GLFLR+Y +H TRDKLPD GS Y         G  V D+ EFVL+NF EAN+LWVR+  Q
Sbjct:   69 KVSDELRYLEDYFEGLRRQGR-PMERLYEQVQGCGNVLPRLYLLITVGGCYIKSKEAPAKTVLADLLEMTKGVQHPMWGLFLRHYLAHQTRDKLPDVGSEYADPEDPACGGSGVADAYEFVLQNFQEANRLWVRLQHQ 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74976.15175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMW9_9PHAE4.330e-8094.70Vacuolar protein sorting-associated protein 35 n=2... [more]
F0YQH4_AURAN1.100e-5265.91Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
W7TDU3_9STRA1.210e-5068.42Vacuolar protein sorting-associated protein 35 n=4... [more]
A0A7S0EY21_9EUKA5.140e-5064.34Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A482RTR6_9ARCH8.720e-4958.33Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A1Y1I153_KLENI4.520e-4864.39Vacuolar protein sorting-associated protein 35 n=1... [more]
A0A7S4B0S6_CHRCT7.310e-4765.65Vacuolar protein sorting-associated protein 35 n=1... [more]
A0A2K1L3R3_PHYPA1.260e-4664.84Vacuolar protein sorting-associated protein 35 n=2... [more]
A0A7S3H9X6_9STRA1.320e-4661.24Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2XXV8_9STRA1.320e-4663.04Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74976contigH-elongata_contig74976:996..2118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score263.8
Seed ortholog evalue4.4e-68
Seed eggNOG ortholog2880.D8LQA0
KEGG koko:K18468
KEGG Pathwayko04144,map04144
EggNOG free text desc.negative regulation of late endosome to lysosome transport
EggNOG OGsKOG1107@1,KOG1107@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size417
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74976.15175.1prot_H-elongata_contig74976.15175.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74976 996..2118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.419436-CDS-H-elongata_contig74976:995..11191622931154.419436-CDS-H-elongata_contig74976:995..1119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74976 996..1119 -
1691679720.6881382-CDS-H-elongata_contig74976:995..11191691679720.6881382-CDS-H-elongata_contig74976:995..1119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74976 996..1119 -
1622931154.4357076-CDS-H-elongata_contig74976:1407..14991622931154.4357076-CDS-H-elongata_contig74976:1407..1499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74976 1408..1499 -
1691679720.7017164-CDS-H-elongata_contig74976:1407..14991691679720.7017164-CDS-H-elongata_contig74976:1407..1499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74976 1408..1499 -
1622931154.4532232-CDS-H-elongata_contig74976:1917..21181622931154.4532232-CDS-H-elongata_contig74976:1917..2118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74976 1918..2118 -
1691679720.7154942-CDS-H-elongata_contig74976:1917..21181691679720.7154942-CDS-H-elongata_contig74976:1917..2118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74976 1918..2118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74976.15175.1

>prot_H-elongata_contig74976.15175.1 ID=prot_H-elongata_contig74976.15175.1|Name=mRNA_H-elongata_contig74976.15175.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MNCIVLWQVLDELRHLEDFFTTQNKQARQPMVGLYEQAQACTMVLPRLYL
LNTVGACYIFSKEAPARDILKDLLEMTKGVQHPMRGLFLRNYFSHVTRDK
LPDAGSPYEGEGGMVDDSVEFVLENFVEANKLWVRMHGQ
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mRNA from alignment at H-elongata_contig74976:996..2118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74976.15175.1 ID=mRNA_H-elongata_contig74976.15175.1|Name=mRNA_H-elongata_contig74976.15175.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1123bp|location=Sequence derived from alignment at H-elongata_contig74976:996..2118- (Himanthalia elongata Himel1 dioecious)
ATGAACTGCATCGTGTTATGGCAGGTGCTAGATGAACTGCGTCACCTCGA AGACTTCTTCACCACTCAGAACAAACAGGCTCGTCAGCCAATGGTTGGCC TCTACGAGCAGGCTCAGGCATGTACCATGGTACTGCCCAGGCTTTACCTC TTAAACACCGTCGGCGCGTGCTACATCTTCTCCAAGGAGGCACCGGCCAG GGTAAGTGGTCGCTTTGAGAACCGACGTGCATCAGACGGGAGAGGAGGGT TGGTGGTCTTGGAAGGAAGGGTTTAGGAGAAGAAGGGGTGCTCCGTAGGC AGACGAGGATTGGATGCGTCCGGAATCGGTGATGTGTTTTTGAATGCCCT TGGGCTGCAAGCGCGATGTTCTTGACGAGAGGCATGCAGAGTGGTCTTCC GATCGTGCAGGACCATGTGTGTGTTTACTGGAGGCATTTTATGCAGCCGA GCCAACTTGCCGATAACCGGGCGGATCCTTTTGACGCGAGGAATGCGATG CATCGGGATTTGATGCGATAAAATGGGGGCATCATGTTGGTGATTTGTGG ATATTATTTGATCGACGTCTCTGTCCATGATCTATCTATCTATCTGTTGT GACGCCTCTGATTCTTCAGGATATCTTGAAGGATCTCTTGGAGATGACGA AGGGGGTGCAGCACCCCATGCGAGGGCTCTTCCTGAGGAACTACTTCTCG CACGTGACCAGGTAAAAAACAAGTCAACACAAACATACAACAGAGAAAAC GCCTCCATACAACAGGAAAACACCCACGCACAATGAACACGCCCCAACGT GCGCCGCGTTGCTTGTGTGGCGTTTTCAGAAGAGTCCATAAGATCTTCAG TCGCCGCCTCACGCCTTGCCCGATCCTCGCATTTCGTCCCTCTCCCCTTC CGGTCACGCCTGTTTGGAAACCCCTCTAACGAGAGACGGCGAACATGTTT TTCTCATGTTAGCTAAACAGTAACAATTGCCTGCAAAACCCGTTTGCAGG GATAAGCTGCCCGACGCTGGATCGCCGTACGAGGGGGAGGGGGGGATGGT AGACGATAGCGTGGAGTTTGTCTTGGAGAACTTCGTGGAGGCGAACAAGC TGTGGGTTCGGATGCACGGTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig74976:996..2118-

>mRNA_H-elongata_contig74976.15175.1 ID=mRNA_H-elongata_contig74976.15175.1|Name=mRNA_H-elongata_contig74976.15175.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig74976:996..2118- (Himanthalia elongata Himel1 dioecious)
ATGAACTGCATCGTGTTATGGCAGGTGCTAGATGAACTGCGTCACCTCGA
AGACTTCTTCACCACTCAGAACAAACAGGCTCGTCAGCCAATGGTTGGCC
TCTACGAGCAGGCTCAGGCATGTACCATGGTACTGCCCAGGCTTTACCTC
TTAAACACCGTCGGCGCGTGCTACATCTTCTCCAAGGAGGCACCGGCCAG
GATGAACTGCATCGTGTTATGGCAGGTGCTAGATGAACTGCGTCACCTCG
AAGACTTCTTCACCACTCAGAACAAACAGGCTCGTCAGCCAATGGTTGGC
CTCTACGAGCAGGCTCAGGCATGTACCATGGTACTGCCCAGGCTTTACCT
CTTAAACACCGTCGGCGCGTGCTACATCTTCTCCAAGGAGGCACCGGCCA
GGGATATCTTGAAGGATCTCTTGGAGATGACGAAGGGGGTGCAGCACCCC
ATGCGAGGGCTCTTCCTGAGGAACTACTTCTCGCACGTGACCAGGATATC
TTGAAGGATCTCTTGGAGATGACGAAGGGGGTGCAGCACCCCATGCGAGG
GCTCTTCCTGAGGAACTACTTCTCGCACGTGACCAGGGATAAGCTGCCCG
ACGCTGGATCGCCGTACGAGGGGGAGGGGGGGATGGTAGACGATAGCGTG
GAGTTTGTCTTGGAGAACTTCGTGGAGGCGAACAAGCTGTGGGTTCGGAT
GCACGGTCAGGGATAAGCTGCCCGACGCTGGATCGCCGTACGAGGGGGAG
GGGGGGATGGTAGACGATAGCGTGGAGTTTGTCTTGGAGAACTTCGTGGA
GGCGAACAAGCTGTGGGTTCGGATGCACGGTCAG
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