mRNA_H-elongata_contig74971.15174.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74971.15174.1
Unique NamemRNA_H-elongata_contig74971.15174.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74971.15174.1 vs. uniprot
Match: D8LJX2_ECTSI (Farnesyltransferase, CAAX box, alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJX2_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.970e-46
Identity = 105/168 (62.50%), Postives = 131/168 (77.98%), Query Frame = 1
Query:  112 QWLLKEFCLLDTEEGRRSEXXXXXXXXXXXXXXXXXXXXXXFILHASLGQTEGLW--TVRSELTYALGFARRAPSNESPWNFVRGFFRVAARSYANFPEVEKTARSLQMTDLGAKSPHVHSLLTEIYEQEGTEEALNEAINVLQRLRNELDVVRVKYWETRLRSVTRR 609
            QWLL+EF +LDT+EGR  EXXXXXXXXXXXXXXXXXXXXX F++H++LG    L    V+SEL YALG+A+ APSNESPWN++R FFR   R+Y +FPEV+  A +LQ T+ GAKSPHV SLL E+YE+EGTE++L +AI   Q LR+ LD VR +YWE+RLR+   R
Sbjct:  148 QWLLQEFRMLDTQEGRNLEXXXXXXXXXXXXXXXXXXXXXWFVMHSALGTKGSLSDEAVKSELAYALGYAKTAPSNESPWNYLRAFFRTGGRAYKDFPEVKGAALALQKTEAGAKSPHVFSLLAEVYEKEGTEDSLKKAIAAFQHLRDTLDEVRARYWESRLRAAATR 315          
BLAST of mRNA_H-elongata_contig74971.15174.1 vs. uniprot
Match: A0A835YWW6_9STRA (Farnesyltransferase, CAAX box, alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWW6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 8.680e-20
Identity = 89/230 (38.70%), Postives = 118/230 (51.30%), Query Frame = 1
Query:    1 YHRRALSEYRGNAGKELEYVDRVVADDPKNYHAWSHRQWLLKEF----------------------------CLLDTEEGRRSEXXXXXXXXXXXXXXXXXXXXXXFILHASLGQTEGLWTVRSELTYALGFARRAPSNESPWNFVRGFFRVAARSYANFPEVEKTARSLQMTDLGAKS-PHVHSLLTEIYEQEGTEEALNEAINVLQRLRNELDVVRVKYWETRLRSVT 603
            Y RR L     +  +EL YV  V   +PKNY  W HR  ++++                                         XXXXXXXXXXXXXXXXXXXXX F++H + G       V +E  +AL    RA  NES WN++RG+  V   S+   P+V+   + L     GA    H+H+LL E +EQEGTEE+LN AI +LQ+LRN++D VR KYW+ R+   T
Sbjct:   77 YRRRCLFALNKDLAEELSYVRDVALSNPKNYQIWYHRXAVVEQLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWFVIH-NAGVAVTAEAVAAEAEFALRHIERAVHNESAWNYLRGYL-VDGASFDKHPQVKAHCQKLLAEHSGAADCAHLHNLLAEAHEQEGTEESLNTAIELLQKLRNDIDPVREKYWDRRIARAT 304          
BLAST of mRNA_H-elongata_contig74971.15174.1 vs. uniprot
Match: A0A137QXY1_9AGAR (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137QXY1_9AGAR)

HSP 1 Score: 87.4 bits (215), Expect = 6.130e-17
Identity = 63/217 (29.03%), Postives = 98/217 (45.16%), Query Frame = 1
Query:    1 YHRRALSEYRGNAGKELEYVDRVVADDPKNYHAWSHRQWLLKEFCLLDTEEGRRSEXXXXXXXXXXXXXXXXXXXXXXFILHAS---LGQTEGLWTVRSELTYALGFARRAPSNESPWNFVRGFFRVAARSYANFPEVEKT------ARSLQMTDL-------GAKSPHVHSL--LTEIYEQEGTEEALNEAINVLQRLRNELDVVRVKYWETRLRS 597
            +HRR L         EL +++R +  DPKNYH WS+RQWLL  F  +D E+  + E                      F++       GQ +    V+ EL +       AP+N S WN++RG        Y+   +  K            + DL       GA+ P V+++  L +IYEQ G ++ + +A+ + + L NE D +R KYW+ R+R 
Sbjct:  120 HHRRLLLTQLRTPLPELRFIERCLQVDPKNYHTWSYRQWLLSHF--VDDEDLWKGELDFIENAIGDDVRNNSAWHHRHFVVFGCGVRAGQEDRARVVKRELIFTKQNISLAPNNPSAWNYLRGILDHPKLPYSLLTQFVKPYTVPLDPNVADIVDLENPPPMKGAELPCVYAIEFLADIYEQAGDKDNILKAVELWKLLANEHDTIRRKYWDHRIRE 334          
BLAST of mRNA_H-elongata_contig74971.15174.1 vs. uniprot
Match: E4ZG15_LEPMJ (Similar to protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit n=2 Tax=Leptosphaeriaceae TaxID=34374 RepID=E4ZG15_LEPMJ)

HSP 1 Score: 86.3 bits (212), Expect = 1.840e-16
Identity = 76/196 (38.78%), Postives = 104/196 (53.06%), Query Frame = 1
Query:    1 YHRRALSEYRGNAGKELEYVDRVVADDPKNYHAWSHRQWLLKEFCLLDTEEGRRSEXXXXXXXXXXXXXXXXXXXXXXFILHASLGQTEGLWTVRSELTYALGFARRAPSNESPWNFVRGFFRVAARSYANFPEVEKTARSLQMTDLGAKSPHVHSLLTEIYEQEGTEEALNEAINVLQRLRNELDVVRVKYWETR 588
            +HR  + +  G+   E E++D+++  D KNYH WS+RQWL+K F L D  E    E   XXXXXXXXXXXXXXXXXXX +       +E +  V+ E+ Y     R+AP N+SPWN+V G  R A    +   +       +Q  +    S H   LL +IY +E  E +  EA   L  L  + D +R  YW  R
Sbjct:  153 HHRHTIIDALGSPEGEAEFIDKMLEQDSKNYHVWSYRQWLVKRFDLFDKPE--ELEWTHXXXXXXXXXXXXXXXXXXXVVEGRKGKPSEDI--VQREIEYTKSAIRKAPQNQSPWNYVLGIVRAAGMPKSTLKDFALEFADVQRPE-EVYSSHALDLLADIYAEE--ENSKEEARKALDLLATKYDPIRASYWNFR 341          
BLAST of mRNA_H-elongata_contig74971.15174.1 vs. uniprot
Match: A0A7S2Y1S9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1S9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.010e-16
Identity = 78/168 (46.43%), Postives = 110/168 (65.48%), Query Frame = 1
Query:   28 RGNAGKELEYVDRVVADDPKNYHAWSHRQWLLKEFCLLDTEEGRRS-------EXXXXXXXXXXXXXXXXXXXXXXFILHASLGQTEGLWTVRSELTYALGFARRAPSNESPWNFVRGFFRVA-ARSYANFPEVEKTARSLQMTDLGAKSP--HVHSLLTEIYEQEGT 501
            R   G ELE++  V+A+D KNYHAWS+RQ++L +    + + G  +       EXXXXXXXXXXXXXXXXXXXXXXF++H S  Q      ++SE+ YAL +   AP+NESPW+++RG+F  A A SY+  P+++  A  L+ ++ G + P  H H LL +I  QEG+
Sbjct:    2 RDGLGAELEFIGNVLAEDAKNYHAWSYRQYVLLQHSS-EAQAGEEAVAEMWSQEXXXXXXXXXXXXXXXXXXXXXXFVVH-SRPQPVTPEVLQSEVEYALKYIAMAPNNESPWSYLRGYFHGANAFSYSECPDLK--AACLRWSE-GPEDPSVHAHCLLLDILSQEGS 164          
BLAST of mRNA_H-elongata_contig74971.15174.1 vs. uniprot
Match: A0A7S1Y693_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y693_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.010e-16
Identity = 62/213 (29.11%), Postives = 100/213 (46.95%), Query Frame = 1
Query:   46 ELEYVDRVVAD-DPKNYHAWSHRQWLLKEFCLLDT--EEGRRSEXXXXXXXXXXXXXXXXXXXXXXFILHASLGQTEGL--WTVRSELTYALGFARRAPSNESPWNFVRGFFRVAAR-----SYANFPEV------EKTARSLQMTDLGAKSP----HVHSLLTEIYEQEGTEEALNEAINVLQRLRNELDVVRVKYW--------ETRLRSV 600
            +LEYV +++   D KNYHAWSHRQWLL     + T  E+ R  E                      FI H +  + + L   T R E+ YALG A+  P NESPW ++ G  +   +     + ++F E+      E    + Q+     + P    +++S L ++ E + T ++L EA+ + Q +  + D +R KYW        ET+L+ +
Sbjct:   39 DLEYVSKILQQHDGKNYHAWSHRQWLLGHLMSMSTKDEDVRTKELKFLEKLLTQDVRNNSAWNQRWFITHFNHNKRQPLDSATARIEVEYALGQAKLDPYNESPWRYLIGVLKEQQKKKGDDTTSSFYELVQYAYTESITTTKQVLVSAERDPEGCANLNSALMDLLEFQQTPQSLEEALRLCQEMATKHDTIRAKYWTHVRTKELETKLKEI 251          
BLAST of mRNA_H-elongata_contig74971.15174.1 vs. uniprot
Match: A0A7R7XM58_9EURO (CAAX geranylgeranyltransferase alpha subunit n=3 Tax=Aspergillus TaxID=5052 RepID=A0A7R7XM58_9EURO)

HSP 1 Score: 83.6 bits (205), Expect = 1.560e-15
Identity = 58/208 (27.88%), Postives = 89/208 (42.79%), Query Frame = 1
Query:   43 KELEYVDRVVADDPKNYHAWSHRQWLLKEFCLLDT--EEGRRSEXXXXXXXXXXXXXXXXXXXXXXFILHASLGQTEGLW--------------TVRSELTYALGFARRAPSNESPWNFVRGFFRVAARSYANFPE------VEKTARSLQMTDLGAKSPHVHSLLTEIYEQEGTEEALNEAINVLQRLRNELDVVRVKYWETRLRSV 600
            KE++++  + A D KNYH W++R WL++ F L D+  E    +                              G   G                +V  EL YA     RAP N SPW++ RG  R A R  + + +      ++K     Q+ D+  KS H    L ++Y Q GT  A +EAI +L  L+++ D +R  YW  R+ S+
Sbjct:  131 KEMDFLMEMFAQDSKNYHVWTYRHWLVRHFGLWDSPREIADVNSLLNSDLRNNSAWNHRYMLRFGPRSEEPDAGMVHGSGPPAKKGRHDVVDEDSVDEELQYAQEQIVRAPENRSPWSYARGVIRAAGRPLSEWKDFTQKFVIDKRDGQGQLVDVEVKSSHAVEWLADVYAQGGT--APDEAIRMLNLLKDKYDPIRKNYWNYRIESI 336          
BLAST of mRNA_H-elongata_contig74971.15174.1 vs. uniprot
Match: A0A6A5KLF9_9PLEO (Protein prenylyltransferase n=1 Tax=Decorospora gaudefroyi TaxID=184978 RepID=A0A6A5KLF9_9PLEO)

HSP 1 Score: 83.6 bits (205), Expect = 1.720e-15
Identity = 69/196 (35.20%), Postives = 96/196 (48.98%), Query Frame = 1
Query:    1 YHRRALSEYRGNAGKELEYVDRVVADDPKNYHAWSHRQWLLKEFCLLDTEEGRRSEXXXXXXXXXXXXXXXXXXXXXXFILHASLGQTEGLWTVRSELTYALGFARRAPSNESPWNFVRGFFRVAARSYANFPEVEKTARSLQMTDLGAKSPHVHSLLTEIYEQEGTEEALNEAINVLQRLRNELDVVRVKYWETR 588
            +HR  + +  G+   E E++  +V  D KNYH WS+RQWL+K F L D  E    E       XXXXXXXXXXXXXXX+++               E+ Y     R+AP N+SPWN++ G  R A    +   +       +Q  D    S H   LL +IY +E  E +  +A   L+ L  + D +R  YW  R
Sbjct:  156 HHRHTMIDALGSPDGEPEFISAMVELDSKNYHVWSYRQWLVKRFDLFDKPE----ELAWTHGMXXXXXXXXXXXXXXXYLVVGGREGKPSADIANREIEYTKAAIRKAPQNQSPWNYILGILRAAELPKSTLKDFATEFADVQNPD-HVHSSHALDLLADIYAEE--ESSKEKAAKALELLATKYDPIRANYWNFR 344          
BLAST of mRNA_H-elongata_contig74971.15174.1 vs. uniprot
Match: A0A7S4S4X0_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S4X0_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.650e-15
Identity = 84/212 (39.62%), Postives = 114/212 (53.77%), Query Frame = 1
Query:   37 AGKELEYVDRVVADDPKNYHAWSHRQWLLKEFCLLDTEEGRRSEXXXXXXXXXXXXXXXXXXXXXXFILHASLGQT--EGLWTVRSELTYALGFARRAPSNESPWNFVRGFFRVA----------------ARSYANF--PEVEKTARSLQMTDLGAKS-PHVHSLLTEIYEQEGTEEALNEAINVLQRLRNELDVVRVKYWETRLRSVTRR 609
            A +EL Y++ V+ +D KNYHAWSHRQW+L+  C   +     S XXXXXXXXXXXXXXXXXXXXXX I H    +     L  V+ E+TYA+  A   P NESPW +V GF                     +S  N    E+ K   +L  T+    S  H+ S   +I E +G + +L +A N+ + L  E D++R KYW+ R + +  R
Sbjct:  154 AKEELNYINGVLENDGKNYHAWSHRQWVLRTICFPPSIYN--SXXXXXXXXXXXXXXXXXXXXXXXXITHKGCTRKPLSSLEDVQKEITYAMQCAEVDPFNESPWRYVIGFLEECKKYSGSEGNDVMEAADVKSLINSCEQEITKMRGNLGSTEYDVDSCVHLTSAKIDILEMKGDDISLEQAANLAKDLETEHDLIRKKYWKLREKEIRSR 363          
BLAST of mRNA_H-elongata_contig74971.15174.1 vs. uniprot
Match: A0A6A5QZC6_AMPQU (Farnesyltransferas-like protein n=1 Tax=Ampelomyces quisqualis TaxID=50730 RepID=A0A6A5QZC6_AMPQU)

HSP 1 Score: 81.6 bits (200), Expect = 8.140e-15
Identity = 73/196 (37.24%), Postives = 97/196 (49.49%), Query Frame = 1
Query:    1 YHRRALSEYRGNAGKELEYVDRVVADDPKNYHAWSHRQWLLKEFCLLDTEEGRRSEXXXXXXXXXXXXXXXXXXXXXXFILHASLGQTEGLWTVRSELTYALGFARRAPSNESPWNFVRGFFRVAARSYANFPEVEKTARSLQMTDLGAKSPHVHSLLTEIYEQEGTEEALNEAINVLQRLRNELDVVRVKYWETR 588
            +HR  + +  G++  E E++  ++  D KNYH WS+RQWL+K F L +  E    E    XXXXXXXXXXXXXXXXXX  +    G        + E+ Y     R+AP N+SPWN+V G  R A    +   +       L   D    S H   LL +IY +E   +A  EA   L  L    D +R  YW  R
Sbjct:  151 HHRHTIIDALGSSEGEPEFISTMLEQDSKNYHVWSYRQWLVKRFDLFEEPE----ELEWTXXXXXXXXXXXXXXXXXXXXVVGGRGGKPSEDLAKREIEYTKAAIRKAPQNQSPWNYVSGVLRAAQLPKSTIKDFALEFADLDRPD-EVYSSHALDLLADIYAEEENSKA--EAEKALNLLATRYDPIRANYWNFR 339          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74971.15174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJX2_ECTSI2.970e-4662.50Farnesyltransferase, CAAX box, alpha n=2 Tax=Ectoc... [more]
A0A835YWW6_9STRA8.680e-2038.70Farnesyltransferase, CAAX box, alpha n=1 Tax=Tribo... [more]
A0A137QXY1_9AGAR6.130e-1729.03Protein farnesyltransferase/geranylgeranyltransfer... [more]
E4ZG15_LEPMJ1.840e-1638.78Similar to protein farnesyltransferase/geranylgera... [more]
A0A7S2Y1S9_9STRA4.010e-1646.43Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1Y693_9STRA4.010e-1629.11Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7R7XM58_9EURO1.560e-1527.88CAAX geranylgeranyltransferase alpha subunit n=3 T... [more]
A0A6A5KLF9_9PLEO1.720e-1535.20Protein prenylyltransferase n=1 Tax=Decorospora ga... [more]
A0A7S4S4X0_9STRA3.650e-1539.62Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A6A5QZC6_AMPQU8.140e-1537.24Farnesyltransferas-like protein n=1 Tax=Ampelomyce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74971contigH-elongata_contig74971:767..2943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue7.4e-40
Seed eggNOG ortholog2880.D8LJX2
Preferred nameRAM2
KEGG rclassRC00069,RC03004
KEGG koko:K05955
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0004660,GO:0004661,GO:0004662,GO:0004663,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005953,GO:0005965,GO:0006464,GO:0006807,GO:0006950,GO:0007323,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0008360,GO:0009414,GO:0009415,GO:0009628,GO:0009787,GO:0009788,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010467,GO:0010646,GO:0010648,GO:0016740,GO:0016765,GO:0018342,GO:0018343,GO:0018344,GO:0019538,GO:0022603,GO:0022604,GO:0023051,GO:0023057,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048509,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051604,GO:0051641,GO:0065007,GO:0065008,GO:0070727,GO:0071704,GO:0072657,GO:0072659,GO:0097354,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990234,GO:1990778
EggNOG free text desc.CAAX-protein geranylgeranyltransferase activity
EggNOG OGsCOG5536@1,KOG0530@2759
EC2.5.1.58,2.5.1.59
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01006
Hectar predicted targeting categoryother localisation
Exons5
Model size609
Cds size609
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74971.15174.1prot_H-elongata_contig74971.15174.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74971 767..2943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.2937243-CDS-H-elongata_contig74971:766..8951622931154.2937243-CDS-H-elongata_contig74971:766..895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74971 767..895 -
1691679720.6396902-CDS-H-elongata_contig74971:766..8951691679720.6396902-CDS-H-elongata_contig74971:766..895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74971 767..895 -
1622931154.3222451-CDS-H-elongata_contig74971:1294..13451622931154.3222451-CDS-H-elongata_contig74971:1294..1345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74971 1295..1345 -
1691679720.6498096-CDS-H-elongata_contig74971:1294..13451691679720.6498096-CDS-H-elongata_contig74971:1294..1345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74971 1295..1345 -
1622931154.3403046-CDS-H-elongata_contig74971:1710..18631622931154.3403046-CDS-H-elongata_contig74971:1710..1863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74971 1711..1863 -
1691679720.657454-CDS-H-elongata_contig74971:1710..18631691679720.657454-CDS-H-elongata_contig74971:1710..1863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74971 1711..1863 -
1622931154.3591259-CDS-H-elongata_contig74971:2254..24041622931154.3591259-CDS-H-elongata_contig74971:2254..2404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74971 2255..2404 -
1691679720.66635-CDS-H-elongata_contig74971:2254..24041691679720.66635-CDS-H-elongata_contig74971:2254..2404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74971 2255..2404 -
1622931154.3790698-CDS-H-elongata_contig74971:2817..29431622931154.3790698-CDS-H-elongata_contig74971:2817..2943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74971 2818..2943 -
1691679720.6792157-CDS-H-elongata_contig74971:2817..29431691679720.6792157-CDS-H-elongata_contig74971:2817..2943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74971 2818..2943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74971.15174.1

>prot_H-elongata_contig74971.15174.1 ID=prot_H-elongata_contig74971.15174.1|Name=mRNA_H-elongata_contig74971.15174.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp
YHRRALSEYRGNAGKELEYVDRVVADDPKNYHAWSHRQWLLKEFCLLDTE
EGRRSELAVVDALLNKDLRNNSAWNHRWFILHASLGQTEGLWTVRSELTY
ALGFARRAPSNESPWNFVRGFFRVAARSYANFPEVEKTARSLQMTDLGAK
SPHVHSLLTEIYEQEGTEEALNEAINVLQRLRNELDVVRVKYWETRLRSV
TRR
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mRNA from alignment at H-elongata_contig74971:767..2943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74971.15174.1 ID=mRNA_H-elongata_contig74971.15174.1|Name=mRNA_H-elongata_contig74971.15174.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2177bp|location=Sequence derived from alignment at H-elongata_contig74971:767..2943- (Himanthalia elongata Himel1 dioecious)
TATCACCGGCGAGCGTTGTCGGAGTACAGAGGTAACGCTGGGAAAGAGCT GGAGTACGTGGATCGAGTCGTGGCCGATGATCCGAAGAATTACCACGCGT GGTCACATCGACAGTGGTTGTTGAAGGTGCAGCACAGCGCCGGGGTTGGG GGAGGGGGGAGGAGGCCGTAGCGTCGTATGTAATGAGTGCCTGTCTTTCG TCTCGCACGGCTCTCGCTCACGCAAACGAAGCGAGAACACCAAATCAGGT CGAAGTAACCAGCGGTTGCACACCACGCGACAGGCAACTCTCGGGTAATC CGCGAGCTGAAAAAAAGGCGCGCACTCGCTGATGCAGGGTTGGCCTGGAG CCTTCCATTCAGTTCTTCCCCGTTTCTATGATGGGGTCCTCGTATTTTTG TATTTTGGGTCGGGGAGGGATCGGAAAATGTCGCACCTGGGGTATAAATT ACAGTATATATTTATATGTTTGTCATCAAAGCGCTGTTCATCATAGTTCG CGCGTTTGCGCACTGCTCGATGATAACGTGTGATCTCAGGAGTTTTGTCT ATTGGATACTGAGGAAGGGCGCCGGTCGGAGCTTGCGGTTGTAGACGCCC TTCTCAACAAGGACCTGCGAAACAATTCAGCGTGGAACCACCGGTGGTTC ATCCTCCACGCCTCGCTTGGCCAGACAGAGGGCTTGTGGGTGGTCGCGGG TCTTCTCCGATGAGGTGAAATCTTTTTTTTTTTTTTTTTTTTTTTTTGAG GGCTTGTTCGAACACGACCAGCCACGACCCGACCCGCCAGTGCGCCATCG AACGTTAACACGTCCTTCCTTCGATTATTCAGCACAGACTTGCACGCAGA ACTCTACAACGTCGTAAGTCCGCCAAATTGTTTCGCCAACGATCGCATGA AGTGCGAACACCGCTACCGACCTTACTCCCCCCCCCCCCGTCGACTCCAT GCTCCCTAGACGGTGAGATCGGAGCTGTCGTATGCNNNNNNNNNNCAAAT TGTTTCGCCAACGATCGCATGAAGTGCGAACACCGCTAACGACCTTACTT CCCCCCCCCCGTCGACTCCATGCTCCCTAGACGGTGAGATCGGAGCTGAC GTATGCTTTGGGGTTCGCGCGGCGCGCACCTAGCAACGAGAGTCCGTGGA ACTTCGTGAGGGGGTTCTTCAGGGTCGCGGCCAGATCCTACGCCAATTTT CCGGAGGTCGAGAAGACCGCTCGTTCGCTGCAGGTAAGCTGTTTCCGTTC GTTAAAACCTTGGTGGGTGTTCTTTACCTACCCTCCACCCTCCGCCGCCC CCCCCTGCACCGTCCCGTCCCGTCAGATTGGCTAGGCGTAGTAGGCGTGG TCGCCGTCTCGCAGGTAGTTTCCCTCGAGACGGAAGGGTACCTCTGCTTG ATTCTTGTCCCCGCACGCAAGTGTATCTTGATGCTATGGTATCTTGATCT CATCGTTCCTCCTTACGCTGCTCGGTGATTTCCCGGGGAGCCTTTTTAGT CCGCGCTTATCCTCTCTCCGCAACCCTTTTTCCCATGGTGTGTTTCCTGT TTGCGGTGCAATTTATGTTTGGTTTTGCGTGGACGGTTTTCGATACAGAT GACCGACCTCGGCGCGAAGAGCCCGCACGTGCACAGCTTGCTCACAGAGG TGGGGGTGATGGACGCTATATTTCTATGTCGATCCGACCGGGATCGACCT CTATAGCTCTAGAGCGCTATAGCTCGGATCTCCCCGCGCGGTCCGGTCTA ATATAACAAACAAAACGACGGGAATATGCGTGCGCGTTATTAATGATGTT CTATGAGGAAGCAATGATCTCGACGCGACGCCAACGGCAGTGGTAAAGCG AGTTGTCATGATATAATGATCGAGGGGAGCGTACCATGTGAAAGGCGTGG TAGTAGCCTGAAAGCGTGGCTCTCACCCTGTCGCTGCATGTCCTTAGTGA AATTGCTTCTGTCTCTTGAGAGTCTGACCCTCACCTCTCACCCAATCCCC AAACGCTGCCGGTTGACCCAACGGACAAACCTATCCCCATCCGGGAAGAT CTACGAGCAGGAGGGAACGGAAGAAGCGCTAAACGAGGCCATCAACGTGC TGCAGCGGCTGCGCAACGAGCTCGACGTCGTACGTGTCAAATACTGGGAA ACCCGACTGCGTTCGGTAACGCGCCGA
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Coding sequence (CDS) from alignment at H-elongata_contig74971:767..2943-

>mRNA_H-elongata_contig74971.15174.1 ID=mRNA_H-elongata_contig74971.15174.1|Name=mRNA_H-elongata_contig74971.15174.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig74971:767..2943- (Himanthalia elongata Himel1 dioecious)
TATCACCGGCGAGCGTTGTCGGAGTACAGAGGTAACGCTGGGAAAGAGCT
GGAGTACGTGGATCGAGTCGTGGCCGATGATCCGAAGAATTACCACGCGT
GGTCACATCGACAGTGGTTGTTGAAGTATCACCGGCGAGCGTTGTCGGAG
TACAGAGGTAACGCTGGGAAAGAGCTGGAGTACGTGGATCGAGTCGTGGC
CGATGATCCGAAGAATTACCACGCGTGGTCACATCGACAGTGGTTGTTGA
AGGAGTTTTGTCTATTGGATACTGAGGAAGGGCGCCGGTCGGAGCTTGCG
GTTGTAGACGCCCTTCTCAACAAGGACCTGCGAAACAATTCAGCGTGGAA
CCACCGGTGGTTCATCCTCCACGCCTCGCTTGGCCAGACAGAGGGCTTGT
GGGAGTTTTGTCTATTGGATACTGAGGAAGGGCGCCGGTCGGAGCTTGCG
GTTGTAGACGCCCTTCTCAACAAGGACCTGCGAAACAATTCAGCGTGGAA
CCACCGGTGGTTCATCCTCCACGCCTCGCTTGGCCAGACAGAGGGCTTGT
GGACGGTGAGATCGGAGCTGACGTATGCTTTGGGGTTCGCGCGGCGCGCA
CCTAGCAACGAGAGTCCGTGGAACTTCGTGAGGGGGTTCTTCAGGGTCGC
GGCCAGATCCTACGCCAATTTTCCGGAGGTCGAGAAGACCGCTCGTTCGC
TGCAGACGGTGAGATCGGAGCTGACGTATGCTTTGGGGTTCGCGCGGCGC
GCACCTAGCAACGAGAGTCCGTGGAACTTCGTGAGGGGGTTCTTCAGGGT
CGCGGCCAGATCCTACGCCAATTTTCCGGAGGTCGAGAAGACCGCTCGTT
CGCTGCAGATGACCGACCTCGGCGCGAAGAGCCCGCACGTGCACAGCTTG
CTCACAGAGATGACCGACCTCGGCGCGAAGAGCCCGCACGTGCACAGCTT
GCTCACAGAGATCTACGAGCAGGAGGGAACGGAAGAAGCGCTAAACGAGG
CCATCAACGTGCTGCAGCGGCTGCGCAACGAGCTCGACGTCGTACGTGTC
AAATACTGGGAAACCCGACTGCGTTCGGTAACGCGCCGAATCTACGAGCA
GGAGGGAACGGAAGAAGCGCTAAACGAGGCCATCAACGTGCTGCAGCGGC
TGCGCAACGAGCTCGACGTCGTACGTGTCAAATACTGGGAAACCCGACTG
CGTTCGGTAACGCGCCGA
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