mRNA_H-elongata_contig74913.15171.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig74913.15171.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 5.940e-19 Identity = 57/133 (42.86%), Postives = 77/133 (57.89%), Query Frame = 1
Query: 1 LDAFIVALNQATEGR-WYVSTRNLQLASLQLCLAGRSVSTLSVRVDANTPRSLLARRGRRHMLPETAGWRTRSSTRVPVVRARGVTWELPAGIWSQSRSTELLLLERLEWLEFGKLFKGSLNGVVWPRGLKRV 396
L VALN+ +G+ WY ST+ LQLASL+LC+A R TL + VDA+TPR LLA P+ TRVP +RAR TW +P + T + +++LEFG+ F GSL+ +VWPR LK +
Sbjct: 137 LKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRL-----CGTRVPRLRARRATWNVPT---ASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTI 261
BLAST of mRNA_H-elongata_contig74913.15171.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 5.960e-18 Identity = 56/137 (40.88%), Postives = 81/137 (59.12%), Query Frame = 1
Query: 1 LDAFIVALNQATEGR-WYVSTRNLQLASLQLCLAGRSVSTLSVRVDANTPRSLLARRGRRHMLPETAGWRTRSSTRVPVVRARGVTWELPAGIWSQSRSTELLLLERLEWLEFGKLFKGSLNGVVWPRGLKRVRLNG 408
L+A IVALN+ ++G+ WY ST+ QLASL+ C+A R+ TL ++VD+ TPR LLA P+ TRVP +RAR VTW++P ++ ++ + LE F + F+ SL V WPR LK V ++G
Sbjct: 13 LNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRL-----CGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLE---FVRAFEDSLEAVAWPRRLKTVEVSG 141
BLAST of mRNA_H-elongata_contig74913.15171.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 9.230e-18 Identity = 67/139 (48.20%), Postives = 79/139 (56.83%), Query Frame = 1
Query: 1 LDAFIVALNQATEG---RWYVSTRNLQLASLQLCLAGRSVSTLSVRVDANTPRSLLARRGRRHMLPETAGWRTRSSTRVPVVRARGVTWELPAGIWSQSRSTELLLL-ERLEWLEFGKLFKGSLNG-VVWPRGLKRVRL 402
LDAF++AL+QA EG RWY ST LQL SL LC A R+ S L V VD TPRSL + R + P T W S+RVPVVRA +TW L + + EL ERLE L G SL VVWPRGL ++ L
Sbjct: 12 LDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTR-PNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELL--GSSCVSSLGSEVVWPRGLTQLVL 147
BLAST of mRNA_H-elongata_contig74913.15171.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 1.140e-17 Identity = 64/142 (45.07%), Postives = 77/142 (54.23%), Query Frame = 1
Query: 4 DAFIVALNQATEG---RWYVSTRNLQLASLQLCLAGRSVSTLSVRVDANTPRSLLARRGRRHMLPETAGWRTRSSTRVPVVRARGVTWELPAGIWSQSRSTELLLL-ERLEWLEFGKLFKGSLNGVVWPRGLKRVRLNGCFN 417
DAF +AL+QA EG RWY ST LQL SL +C A RS TL VRV TP SL + LP T + R +RVPVVRA +TW Q + EL ERLE + G L SL VVWP GL ++ L+ F+
Sbjct: 11 DAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSP-PTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMV--GPLCAASLGSVVWPLGLTQLVLDTDFH 149
BLAST of mRNA_H-elongata_contig74913.15171.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 2.770e-17 Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 1
Query: 1 LDAFIVALNQATEGR-WYVSTRNLQLASLQLCLAGRSVSTLSVRVDANTPRSLLARRGRRHMLPETAGWRTRSSTRVPVVRARGVTWELPAGIWSQSRSTELLLLERLEWLEFGKLFKGSLNGVVWPRGLKRV 396
L + IVALN+ +G WY ST+ LQ ASL+ C+A R+ + ++VD PR+LLA P+ W TRVP +RAR VTW + A + + + ++ LEFG F GSL V WPR LK +
Sbjct: 15 LSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCW-----TRVPRLRARSVTWNMRA---AAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMI 139
BLAST of mRNA_H-elongata_contig74913.15171.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 4.060e-17 Identity = 54/136 (39.71%), Postives = 75/136 (55.15%), Query Frame = 1
Query: 1 LDAFIVALNQATEGR-WYVSTRNLQLASLQLCLAGRSVSTLSVRVDANTPRSLLARRGRRHMLPETAGWRTRSSTRVPVVRARGVTWELPAGIWSQSRSTELLLLERLEWLEFGKLFKGSLNGVVWPRGLKRVRLN 405
L+A IVALN+ +G+ WY ST+ LQLASL C+A R+ T+ + VD PR LLA P+ W TRVP +R+R VTW +P + T + + +E+LEFG F SL V WP L+ + +
Sbjct: 52 LEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCW-----TRVPRLRSRRVTWNMPT---AAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFH 179
BLAST of mRNA_H-elongata_contig74913.15171.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 3.450e-16 Identity = 56/133 (42.11%), Postives = 77/133 (57.89%), Query Frame = 1
Query: 1 LDAFIVALNQATEGR-WYVSTRNLQLASLQLCLAGRSVSTLSVRVDANTPRSLLARRGRRHMLPETAGWRTRSSTRVPVVRARGVTWELPAGIWSQSRSTELLLLERLEWLEFGKLFKGSLNGVVWPRGLKRV 396
L+A VAL + +G+ WY ST+ LQLASL+ C+A R+ TL + VD PR LLA P+ S RVP +RAR VTW +P ++ RS L++ L+ L+FG F+GSL V WPR L+ +
Sbjct: 37 LNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRL-----SRRRVPRLRARHVTWNMPTA--AELRSPIFALMD-LDHLDFGSAFEGSLEAVTWPRRLESI 161
BLAST of mRNA_H-elongata_contig74913.15171.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 3.770e-16 Identity = 57/129 (44.19%), Postives = 75/129 (58.14%), Query Frame = 1
Query: 13 IVALNQATEG-RWYVSTRNLQLASLQLCLAGRSVSTLSVRVDANTPRSLLARRGRRHMLPETAGWRTRSSTRVPVVRARGVTWELPAGIWSQSRSTELLLLERLEWLEFGKLFKGSLNGVVWPRGLKRV 396
I+ALN+ +G RWY ST+ LQLASL+ CLA R L ++VDA TPR+LLA P T + TRVP +RAR V W +P + T + L+ + L FG +F GSL VVWP LK++
Sbjct: 22 ILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPP--PHT---KRPCRTRVPRLRARRVKWNMPT---ATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQI 142
BLAST of mRNA_H-elongata_contig74913.15171.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 4.780e-16 Identity = 60/135 (44.44%), Postives = 74/135 (54.81%), Query Frame = 1
Query: 1 LDAFIVALNQATEG---RWYVSTRNLQLASLQLCLAGRSVSTLSVRVDANTPRSLLARRGRRHMLPETAGWRTRSSTRVPVVRARGVTWELPAGIWSQSRSTELLLLERLEWLEFGKLFKGSLNGVVWPRGLKRV 396
LDAF+VALNQA +G RWYVST LQL SL++C A R V TL VRV TP SL + H + S+RVPVV+A G+TW LP G+ Q +TE+ SL VWP+ LKR+
Sbjct: 10 LDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFP-SQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSS-AASLESAVWPQRLKRM 142
BLAST of mRNA_H-elongata_contig74913.15171.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.200e-15 Identity = 64/136 (47.06%), Postives = 79/136 (58.09%), Query Frame = 1
Query: 1 LDAFIVALNQATEG---RWYVSTRNLQLASLQLCLAGRSVSTLSVRVDANTPRSLLARRGRRHMLPETAGWRTRSSTRVPVVRARGVTWELPAGIWSQSRSTELLLLERLEWLEFG-KLFKGSLNGVVWPRGLKRV 396
LDAF+VAL+Q EG RWY ST LQLASL+ C A RS L V VDA TP +L + TAG +STRVP V+A G+TW P S S+EL RLE L+ L +L+ VVWP+GL+R+
Sbjct: 10 LDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSL----GQANPTAG----TSTRVPAVQAVGLTWARPTESPLGSASSELWT--RLESLQLQVSLCTANLDSVVWPQGLQRL 135 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74913.15171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74913.15171.1 >prot_H-elongata_contig74913.15171.1 ID=prot_H-elongata_contig74913.15171.1|Name=mRNA_H-elongata_contig74913.15171.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=352bp LDAFIVALNQATEGRWYVSTRNLQLASLQLCLAGRSVSTLSVRVDANTPRback to top mRNA from alignment at H-elongata_contig74913:1737..2792- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74913.15171.1 ID=mRNA_H-elongata_contig74913.15171.1|Name=mRNA_H-elongata_contig74913.15171.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1056bp|location=Sequence derived from alignment at H-elongata_contig74913:1737..2792- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74913:1737..2792- >mRNA_H-elongata_contig74913.15171.1 ID=mRNA_H-elongata_contig74913.15171.1|Name=mRNA_H-elongata_contig74913.15171.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2112bp|location=Sequence derived from alignment at H-elongata_contig74913:1737..2792- (Himanthalia elongata Himel1 dioecious)back to top |